Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G065300 Prunus persica HOM05D008010 ORTHO05D010085 1.2e-130 469.9 250 100.0
MD05G1297000 Malus domestica HOM05D008010 ORTHO05D010085 4.6e-74 282.0 270 63.7
RcHm_v2.0_Chr5g0011411 Rosa chinensis HOM05D008010 ORTHO05D010085 6.9e-70 268.1 267 64.4
FAN25G1163 Fragaria x ananassa HOM05D008010 ORTHO05D010085 3.8e-68 262.3 267 64.0
FvH4_3g07440 Fragaria vesca HOM05D008010 ORTHO05D010085 2.7e-66 256.1 267 63.3
FAN16G3557 Fragaria x ananassa HOM05D008010 ORTHO05D010085 1.0e-60 237.7 282 56.4
FAN21G0683 Fragaria x ananassa HOM05D008010 ORTHO05D010085 2.2e-52 209.9 260 56.9
Dinv12764 Davidia involucrata HOM05D008010 ORTHO05D010085 3.2e-51 206.1 266 52.3
GSVIVG01021245001 Vitis vinifera HOM05D008010 ORTHO05D010085 8.2e-47 191.4 264 50.4
Manes.16G041900 Manihot esculenta HOM05D008010 ORTHO05D010085 2.1e-42 176.8 255 46.3
Cfa000638 Carpinus fangiana HOM05D008010 ORTHO05D010085 3.9e-41 172.6 279 47.0
Haze_06192 Corylus avellana HOM05D008010 ORTHO05D010085 2.6e-40 169.9 250 49.2
QL05p048352 Quercus lobata HOM05D008010 ORTHO05D010085 2.2e-39 166.8 324 41.4
Sed0009144 Sechium edule HOM05D008010 ORTHO05D010085 2.4e-38 163.3 268 45.9
CiPaw.09G071800 Carya illinoinensis HOM05D008010 ORTHO05D010085 6.9e-38 161.8 184 57.6
ClCG03G007530 Citrullus lanatus HOM05D008010 ORTHO05D010085 4.5e-37 159.1 274 43.8
Sabra11G0053600 Salix brachista HOM05D004193 ORTHO05D004862 1.0e-36 157.9 272 42.6
Lalb_Chr18g0054681 Lupinus albus HOM05D008010 ORTHO05D010085 1.3e-36 157.5 260 42.3
Sabra11G0057100 Salix brachista HOM05D008010 ORTHO05D010085 1.3e-36 157.5 248 45.6
Cpa.g.sc7.102 Carica papaya HOM05D008010 ORTHO05D010085 6.5e-36 155.2 261 42.9
Nn3g21124 Nelumbo nucifera HOM05D008010 ORTHO05D010085 4.2e-35 152.5 242 48.8
Thecc.06G167300 Theobroma cacao HOM05D008010 ORTHO05D010085 2.1e-34 150.2 263 43.3
MELO3C002669.2 Cucumis melo HOM05D008010 ORTHO05D010085 2.7e-34 149.8 238 47.1
PGR031G1466 Punica granatum HOM05D008010 ORTHO05D010085 6.1e-34 148.7 218 48.2
CsaV3_1G033180 Cucumis sativus L. HOM05D008010 ORTHO05D010085 3.9e-33 146.0 267 42.3
Atru.chr10.1588_Atru.chr10.1589 Acer truncatum HOM05D008010 ORTHO05D010085 1.1e-32 144.4 246 43.9
Lj6g0013702 Lotus japonicus HOM05D008010 ORTHO05D010085 7.4e-32 141.7 260 42.3
Gohir.A06G132400 Gossypium hirsutum HOM05D008010 ORTHO05D010085 4.1e-30 136.0 262 39.7
Eucgr.D00477 Eucalyptus grandis HOM05D008010 ORTHO05D010085 5.9e-29 132.1 256 41.0
Gohir.D06G137900 Gossypium hirsutum HOM05D008010 ORTHO05D010085 5.0e-28 129.0 262 38.2
Gorai.010G160200 Gossypium raimondii HOM05D008010 ORTHO05D010085 8.5e-28 128.3 262 38.2
Potri.011G069300 Populus trichocarpa HOM05D008010 ORTHO05D010085 3.2e-27 126.3 170 48.2
DCAR_027988 Daucus carota HOM05D008010 ORTHO05D010085 7.2e-27 125.2 191 47.1
Potri.004G059300 Populus trichocarpa HOM05D008010 ORTHO05D010085 9.4e-27 124.8 245 42.9
Duzib160G0139 Durio zibethinus HOM05D008010 ORTHO05D010085 1.2e-26 124.4 247 39.7
Ciclev10016384m.g Citrus clementina HOM05D008010 ORTHO05D010085 4.0e-25 119.4 242 39.3
TAR624G0391 Trochodendron aralioides HOM05D008010 ORTHO05D010085 4.0e-25 119.4 260 40.8
THA.LOC104806163 Tarenaya hassleriana HOM05D008010 ORTHO05D010085 8.8e-25 118.2 254 39.8
Cc02_g15430 Coffea canephora HOM05D008010 ORTHO05D010085 3.3e-24 116.3 184 47.3
Nitab4.5_0008462g0010 Nicotiana tabacum HOM05D008010 ORTHO05D010085 4.4e-24 115.9 255 38.4
Nitab4.5_0002185g0010 Nicotiana tabacum HOM05D008010 ORTHO05D010085 2.2e-23 113.6 258 39.5
Lsat_1_v5_gn_1_109280 Lactuca sativa HOM05D008010 ORTHO05D010085 1.8e-22 110.5 253 38.7
Peaxi162Scf00371g00017 Petunia axillaris HOM05D008010 ORTHO05D010085 2.4e-22 110.2 208 41.3
Sopen02g021240 Solanum pennellii HOM05D008010 ORTHO05D010085 5.3e-22 109.0 262 38.2
ATR0127G032 Amborella trichopoda HOM05D008010 ORTHO05D010085 7.0e-22 108.6 220 41.4
PGSC0003DMG401028427 Solanum tuberosum HOM05D004193 ORTHO05D004862 1.2e-21 107.8 220 41.4
Migut.M01016 Erythranthe guttata HOM05D008010 ORTHO05D010085 2.0e-21 107.1 207 41.1
Solyc02g072260.4 Solanum lycopersicum HOM05D008010 ORTHO05D010085 2.0e-21 107.1 218 40.8
AUR62027705 Chenopodium quinoa HOM05D008010 ORTHO05D010085 1.0e-20 104.8 201 43.3
CAN.G411.60 Capsicum annuum HOM05D008010 ORTHO05D010085 2.2e-20 103.6 254 37.4
Actinidia16781 Actinidia chinensis HOM05D008010 ORTHO05D010085 2.9e-20 103.2 159 45.3
EL10Ac8g20573 Beta vulgaris HOM05D008010 ORTHO05D010085 5.0e-20 102.4 204 38.7
Aqoxy1G02001 Aquilegia oxysepala HOM05D004193 ORTHO05D004862 2.5e-19 100.1 214 41.6
AUR62039459 Chenopodium quinoa HOM05D008010 ORTHO05D010085 2.5e-19 100.1 201 41.8
arahy.Tifrunner.gnm1.ann1.NGY302 Arachis hypogaea HOM05D008010 ORTHO05D010085 4.0e-17 92.8 269 35.3
MBI07_g09547_MAGBIO Magnolia biondii HOM05D008010 ORTHO05D010085 8.8e-17 91.7 136 47.8
Ah.14g087050 Amaranthus hybridus HOM05D004193 ORTHO05D004862 1.2e-16 91.3 194 41.8
AT4G18740 Arabidopsis thaliana HOM05D008010 ORTHO05D010085 1.2e-16 91.3 210 37.6
COL.COLO4_31257 Corchorus olitorius HOM05D008010 ORTHO05D010085 1.2e-16 91.3 113 52.2
arahy.Tifrunner.gnm1.ann1.42QDDD Arachis hypogaea HOM05D008010 ORTHO05D010085 7.5e-16 88.6 191 38.2
ECA248G1583 Erigeron canadensis HOM05D000006 ORTHO05D000091 1.7e-15 87.4 227 35.7
BcaNung05918 Brassica carinata HOM05D008010 ORTHO05D010085 2.8e-15 86.7 192 41.1
AL7G35510 Arabidopsis lyrata HOM05D008010 ORTHO05D010085 5.4e-14 82.4 193 38.3
CDE03G0033 Ceratophyllum demersum HOM05D008010 ORTHO05D010085 5.4e-14 82.4 228 34.2
SGA_v2.0_scaffold1G00067 Striga asiatica HOM05D008010 ORTHO05D010085 1.2e-13 81.3 240 34.6
Thhalv10026132m.g Eutrema salsugineum HOM05D008010 ORTHO05D010085 2.7e-13 80.1 161 41.0
BcaC09g51471 Brassica carinata HOM05D008010 ORTHO05D010085 3.5e-13 79.7 180 39.4
BolC1t01249H Brassica oleracea HOM05D008010 ORTHO05D010085 1.0e-12 78.2 180 39.4
ECA248G2359 Erigeron canadensis HOM05D008010 ORTHO05D010085 1.3e-12 77.8 149 42.3
C01p12720 Brassica napus HOM05D008010 ORTHO05D010085 2.9e-12 76.6 178 37.6
CARHR225590 Cardamine hirsuta HOM05D008010 ORTHO05D010085 5.0e-12 75.9 195 39.5
BraA01t01022Z Brassica rapa HOM05D008010 ORTHO05D010085 6.5e-12 75.5 249 35.3
A01p10760 Brassica napus HOM05D008010 ORTHO05D010085 1.5e-11 74.3 249 35.3
Sp7g17440 Schrenkiella parvula HOM05D008010 ORTHO05D010085 5.2e-09 65.9 209 36.4
SGA_v2.0_scaffold1G00251 Striga asiatica HOM05D008010 ORTHO05D010085 3.4e-08 63.2 86 44.2
unitig_85.g27297 Utricularia gibba HOM05D008010 ORTHO05D010085 2.8e-07 60.1 165 33.3
AUR62011844 Chenopodium quinoa HOM05D005109 ORTHO05D006084 2.4e-06 57.0 189 30.7
CDE04G0279 Ceratophyllum demersum HOM05D008010 ORTHO05D010085 9.2e-06 55.1 203 31.0


User provided reference genes

Program Settings