Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G063800 Prunus persica HOM05D004030 ORTHO05D004952 6.0e-218 760.8 443 100.0
MD10G1277900 Malus domestica HOM05D004030 ORTHO05D004952 6.1e-162 574.7 447 73.2
MD05G1298600 Malus domestica HOM05D004030 ORTHO05D004952 1.7e-156 556.6 446 74.9
CANSAT80G0365 Cannabis sativa HOM05D004030 ORTHO05D004952 1.7e-143 513.5 452 66.2
Glyma.04G063400 Glycine max HOM05D004030 ORTHO05D004952 3.4e-128 462.6 450 61.3
CiPaw.09G071100 Carya illinoinensis HOM05D004030 ORTHO05D004952 1.7e-127 460.3 384 63.8
Cfa013812 Carpinus fangiana HOM05D004030 ORTHO05D004952 1.4e-126 457.2 447 62.0
Sed0004310 Sechium edule HOM05D004030 ORTHO05D004952 1.4e-126 457.2 455 64.0
Dinv16793 Davidia involucrata HOM05D004030 ORTHO05D004952 1.6e-125 453.8 385 63.4
MELO3C002663.2 Cucumis melo HOM05D004030 ORTHO05D004952 3.5e-125 452.6 457 61.7
ClCG03G007580 Citrullus lanatus HOM05D004030 ORTHO05D004952 4.6e-125 452.2 458 62.2
Phvul.009G089700 Phaseolus vulgaris HOM05D004030 ORTHO05D004952 5.0e-124 448.7 450 57.6
TAR627G0229 Trochodendron aralioides HOM05D004030 ORTHO05D004952 3.3e-123 446.0 458 60.3
CsaV3_1G033240 Cucumis sativus L. HOM05D004030 ORTHO05D004952 6.8e-121 438.3 450 60.0
Cfa000628 Carpinus fangiana HOM05D004030 ORTHO05D004952 2.6e-120 436.4 387 61.0
Ca_10308_v3 Cicer arietinum L. HOM05D004030 ORTHO05D004952 7.5e-120 434.9 453 58.9
RcHm_v2.0_Chr5g0011231 Rosa chinensis HOM05D004030 ORTHO05D004952 3.7e-119 432.6 450 62.9
GSVIVG01021235001 Vitis vinifera HOM05D004030 ORTHO05D004952 3.2e-118 429.5 355 66.8
QL05p048142 Quercus lobata HOM05D004030 ORTHO05D004952 2.7e-117 426.4 440 63.6
CSS0010331 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 1.7e-116 423.7 329 68.1
VMungo1309G1983 Vigna mungo HOM05D004030 ORTHO05D004952 3.0e-116 422.9 469 58.4
arahy.Tifrunner.gnm1.ann1.6TT57W Arachis hypogaea HOM05D004030 ORTHO05D004952 1.5e-115 420.6 464 58.0
Haze_22485 Corylus avellana HOM05D004030 ORTHO05D004952 1.9e-115 420.2 427 60.2
FvH4_3g07540 Fragaria vesca HOM05D004030 ORTHO05D004952 2.5e-115 419.9 389 61.4
FAN11G3556 Fragaria x ananassa HOM05D004030 ORTHO05D004952 1.6e-114 417.2 444 58.3
Lj6g0006857 Lotus japonicus HOM05D004030 ORTHO05D004952 2.1e-114 416.8 453 56.1
Medtr1g087790 Medicago truncatula HOM05D004030 ORTHO05D004952 1.1e-113 414.5 453 54.3
Thecc.06G168200 Theobroma cacao HOM05D004030 ORTHO05D004952 1.1e-113 414.5 448 61.6
FAN25G0294 Fragaria x ananassa HOM05D004030 ORTHO05D004952 4.4e-112 409.1 381 60.6
arahy.Tifrunner.gnm1.ann1.HYDG6Q Arachis hypogaea HOM05D004030 ORTHO05D004952 2.2e-111 406.8 523 51.8
FAN21G1198 Fragaria x ananassa HOM05D004030 ORTHO05D004952 3.7e-111 406.0 389 59.4
Haze_06204 Corylus avellana HOM05D004030 ORTHO05D004952 4.1e-110 402.5 445 58.9
MBI07_g09555_MAGBIO Magnolia biondii HOM05D004030 ORTHO05D004952 3.0e-108 396.4 343 61.8
Actinidia16784 Actinidia chinensis HOM05D004030 ORTHO05D004952 6.6e-108 395.2 378 59.5
Gohir.D10G036800 Gossypium hirsutum HOM05D004030 ORTHO05D004952 6.6e-108 395.2 449 55.9
Nn3g19533 Nelumbo nucifera HOM05D004030 ORTHO05D004952 1.9e-107 393.7 470 52.3
Duzib235G1256 Durio zibethinus HOM05D004030 ORTHO05D004952 4.3e-107 392.5 354 62.1
Ciclev10015509m.g Citrus clementina HOM05D004030 ORTHO05D004952 4.0e-105 386.0 449 58.4
FAN11G0126 Fragaria x ananassa HOM05D004030 ORTHO05D004952 2.0e-104 383.6 319 66.1
arahy.Tifrunner.gnm1.ann1.M207AG Arachis hypogaea HOM05D004030 ORTHO05D004952 2.6e-104 383.3 318 65.4
Gohir.A10G036100 Gossypium hirsutum HOM05D004030 ORTHO05D004952 3.4e-104 382.9 330 62.4
Lalb_Chr18g0054631 Lupinus albus HOM05D004030 ORTHO05D004952 1.3e-103 380.9 450 52.4
Glyma.06G064600 Glycine max HOM05D004030 ORTHO05D004952 1.7e-103 380.6 392 58.4
Rhsim13G0189000 Rhododendron simsii HOM05D004030 ORTHO05D004952 1.7e-103 380.6 390 56.2
FvH4_3g37800 Fragaria vesca HOM05D004030 ORTHO05D004952 6.4e-103 378.6 369 59.3
Solyc02g072510.3 Solanum lycopersicum HOM05D004030 ORTHO05D004952 1.2e-101 374.4 332 61.1
TWI39G0053 Tripterygium wilfordii HOM05D004030 ORTHO05D004952 2.1e-101 373.6 381 55.4
PGSC0003DMG400028477 Solanum tuberosum HOM05D004030 ORTHO05D004952 3.5e-101 372.9 332 60.5
ECA248G1387 Erigeron canadensis HOM05D004030 ORTHO05D004952 4.6e-101 372.5 345 58.6
Sopen02g021480 Solanum pennellii HOM05D004030 ORTHO05D004952 4.6e-101 372.5 332 60.8
Potri.011G068100 Populus trichocarpa HOM05D004030 ORTHO05D004952 6.0e-101 372.1 452 51.8
Manes.16G041300 Manihot esculenta HOM05D004030 ORTHO05D004952 1.5e-99 367.5 435 56.1
COL.COLO4_31267 Corchorus olitorius HOM05D004030 ORTHO05D004952 1.9e-99 367.1 477 51.2
Dinv40699 Davidia involucrata HOM05D004030 ORTHO05D004952 1.9e-99 367.1 283 67.8
Eucgr.E02762 Eucalyptus grandis HOM05D004030 ORTHO05D004952 1.9e-99 367.1 356 57.3
CAN.G411.88 Capsicum annuum HOM05D004030 ORTHO05D004952 3.6e-98 362.8 330 60.3
Gorai.011G038700 Gossypium raimondii HOM05D004030 ORTHO05D004952 1.4e-97 360.9 433 52.4
Migut.M01023 Erythranthe guttata HOM05D004030 ORTHO05D004952 1.2e-96 357.8 398 52.5
Aqoxy1G02017 Aquilegia oxysepala HOM05D004030 ORTHO05D004952 9.9e-96 354.8 328 60.1
Psat6g163160 Pisum sativum HOM05D004030 ORTHO05D004952 1.3e-95 354.4 391 52.9
FAN16G1462 Fragaria x ananassa HOM05D004030 ORTHO05D004952 1.4e-94 350.9 302 63.6
SGA_v2.0_scaffold1G00064 Striga asiatica HOM05D004030 ORTHO05D004952 2.1e-93 347.1 353 55.8
DCAR_020881 Daucus carota HOM05D004030 ORTHO05D004952 4.6e-93 345.9 406 51.2
Potri.004G058700 Populus trichocarpa HOM05D004030 ORTHO05D004952 4.6e-93 345.9 461 48.8
Duzib160G0274 Durio zibethinus HOM05D004030 ORTHO05D004952 1.7e-92 344.0 432 55.1
Oeu043115.1 Olea europaea HOM05D004030 ORTHO05D004952 1.3e-90 337.8 330 56.7
arahy.Tifrunner.gnm1.ann1.JIP48Q Arachis hypogaea HOM05D004030 ORTHO05D004952 1.6e-90 337.4 312 61.5
Hund21166 Selenicereus undatus HOM05D004030 ORTHO05D004952 2.1e-90 337.0 358 57.0
EL10Ac8g20580 Beta vulgaris HOM05D004030 ORTHO05D004952 2.8e-90 336.7 354 56.2
DCAR_005202 Daucus carota HOM05D004030 ORTHO05D004952 3.6e-90 336.3 414 50.0
Peaxi162Scf00302g00311 Petunia axillaris HOM05D004030 ORTHO05D004952 4.8e-90 335.9 334 58.4
Cc02_g15190 Coffea canephora HOM05D004030 ORTHO05D004952 4.0e-89 332.8 344 55.5
Nitab4.5_0005171g0040 Nicotiana tabacum HOM05D004030 ORTHO05D004952 7.6e-88 328.6 343 53.9
CDE10G0195 Ceratophyllum demersum HOM05D004030 ORTHO05D004952 2.2e-87 327.0 361 54.3
Nitab4.5_0007465g0050 Nicotiana tabacum HOM05D004030 ORTHO05D004952 6.4e-87 325.5 341 53.7
Sabra11G0049100 Salix brachista HOM05D004030 ORTHO05D004952 1.4e-86 324.3 495 45.7
SalBow8G0896 Salvia bowleyana HOM05D004030 ORTHO05D004952 9.3e-86 321.6 497 44.9
HanXRQChr11g0350521 Helianthus annuus HOM05D004030 ORTHO05D004952 2.3e-84 317.0 320 57.5
Os01g0759700 Oryza sativa ssp. japonica HOM05D004030 ORTHO05D004952 3.9e-84 316.2 341 54.3
SEGI_23147 Sequoiadendron giganteum HOM05D004030 ORTHO05D004952 1.9e-83 313.9 364 50.3
ATR0824G134 Amborella trichopoda HOM05D004030 ORTHO05D004952 5.6e-83 312.4 324 55.9
Zm00001eb370530 Zea mays HOM05D004030 ORTHO05D004952 2.8e-82 310.1 342 52.6
Ah.09g233420 Amaranthus hybridus HOM05D004030 ORTHO05D004952 4.8e-82 309.3 324 53.7
vmacro03922 Vaccinium macrocarpon HOM05D004030 ORTHO05D004952 2.4e-81 307.0 501 40.7
AUR62027698 Chenopodium quinoa HOM05D004030 ORTHO05D004952 1.7e-79 300.8 340 52.4
AUR62031227 Chenopodium quinoa HOM05D004030 ORTHO05D004952 3.8e-79 299.7 329 53.5
arahy.Tifrunner.gnm1.ann1.G7P63M Arachis hypogaea HOM05D004030 ORTHO05D004952 4.6e-77 292.7 429 48.7
PGR031G0618 Punica granatum HOM05D004030 ORTHO05D004952 4.6e-77 292.7 318 53.5
Atru.chr10.1642 Acer truncatum HOM05D004030 ORTHO05D004952 1.8e-76 290.8 351 56.7
PSO063G1415 Papaver somniferum HOM05D004030 ORTHO05D004952 3.9e-76 289.7 405 48.9
Nn1g02598 Nelumbo nucifera HOM05D004030 ORTHO05D004952 5.7e-75 285.8 217 70.0
PSO782G4674 Papaver somniferum HOM05D004030 ORTHO05D004952 5.7e-75 285.8 405 46.7
Sp1g25170 Schrenkiella parvula HOM05D004030 ORTHO05D004952 5.7e-75 285.8 270 58.1
HPP92_021480 Vanilla planifolia HOM05D004030 ORTHO05D004952 2.1e-74 283.9 337 49.6
Sc07g0007700 Simmondsia chinensis HOM05D004030 ORTHO05D004952 2.8e-74 283.5 229 64.2
AT1G29220 Arabidopsis thaliana HOM05D004030 ORTHO05D004952 1.8e-73 280.8 270 57.4
Aa31LG6G6290 Aethionema arabicum HOM05D004030 ORTHO05D004952 6.9e-73 278.9 310 53.2
Thhalv10008084m.g Eutrema salsugineum HOM05D004030 ORTHO05D004952 2.0e-72 277.3 270 57.4
AL1G42980 Arabidopsis lyrata HOM05D004030 ORTHO05D004952 3.4e-72 276.6 266 57.9
Carub.0001s2743 Capsella rubella HOM05D004030 ORTHO05D004952 1.3e-71 274.6 265 58.5
CARHR028550 Cardamine hirsuta HOM05D004030 ORTHO05D004952 3.2e-70 270.0 312 52.6
Manes.17G057500 Manihot esculenta HOM05D004030 ORTHO05D004952 1.2e-69 268.1 272 54.8
BcaB07g32509 Brassica carinata HOM05D004030 ORTHO05D004952 7.9e-69 265.4 261 58.6
TPR.G40724 Trifolium pratense HOM05D004030 ORTHO05D004952 1.0e-68 265.0 189 69.3
A09p37120 Brassica napus HOM05D004030 ORTHO05D004952 8.7e-68 261.9 265 57.4
arahy.Tifrunner.gnm1.ann1.LWKQ47 Arachis hypogaea HOM05D004030 ORTHO05D004952 4.3e-67 259.6 193 68.9
Lsat_1_v5_gn_1_111240 Lactuca sativa HOM05D004030 ORTHO05D004952 7.4e-67 258.8 453 41.9
BcaC05g26946 Brassica carinata HOM05D004030 ORTHO05D004952 9.7e-67 258.5 301 51.8
C05p27930 Brassica napus HOM05D004030 ORTHO05D004952 9.7e-67 258.5 301 51.8
Actinidia35586 Actinidia chinensis HOM05D004030 ORTHO05D004952 1.8e-65 254.2 345 46.4
BraA09t39228Z Brassica rapa HOM05D004030 ORTHO05D004952 4.1e-65 253.1 271 55.7
TWI63G1163 Tripterygium wilfordii HOM05D004030 ORTHO05D004952 2.0e-64 250.8 249 55.8
BolC5t31519H Brassica oleracea HOM05D004030 ORTHO05D004952 5.0e-63 246.1 317 48.9
THA.LOC104820602 Tarenaya hassleriana HOM05D004030 ORTHO05D004952 2.7e-61 240.4 245 55.5
Lalb_Chr15g0086161 Lupinus albus HOM05D004030 ORTHO05D004952 2.4e-57 227.3 312 47.1
SalBow5G1441 Salvia bowleyana HOM05D004030 ORTHO05D004952 2.9e-55 220.3 321 46.7
Sabra04G0038000 Salix brachista HOM05D004030 ORTHO05D004952 2.6e-51 207.2 264 48.1
HPP92_010042 Vanilla planifolia HOM05D004030 ORTHO05D004952 5.7e-51 206.1 165 65.5
Ah.16g107150 Amaranthus hybridus HOM05D004030 ORTHO05D004952 4.8e-50 203.0 209 53.1
Zm00001eb152490 Zea mays HOM05D004030 ORTHO05D004952 1.8e-49 201.1 207 51.2
Mapoly0022s0014 Marchantia polymorpha HOM05D004030 ORTHO05D004952 3.1e-49 200.3 333 41.7
AagrBONN_evm.TU.Sc2ySwM_362.2754 Anthoceros agrestis HOM05D004030 ORTHO05D004952 4.7e-45 186.4 374 37.7
COL.COLO4_06310 Corchorus olitorius HOM05D004030 ORTHO05D004952 1.4e-44 184.9 228 49.6
AagrBONN_evm.TU.Sc2ySwM_344.2041 Anthoceros agrestis HOM05D004030 ORTHO05D004952 6.7e-44 182.6 363 37.2
Lj1A1189T62 Lonicera japonica HOM05D004030 ORTHO05D004952 2.0e-43 181.0 189 54.5
SHI28530 Sapria himalayana HOM05D004030 ORTHO05D004952 1.2e-40 171.8 162 53.7
Lj9A197T43 Lonicera japonica HOM05D004030 ORTHO05D004952 5.9e-40 169.5 152 61.2
Cpa.g.sc7.87 Carica papaya HOM05D004030 ORTHO05D004952 1.0e-39 168.7 137 66.4
SMO266G0004 Selaginella moellendorffii HOM05D004030 ORTHO05D004952 8.0e-37 159.1 312 37.5
BcaB03g13895 Brassica carinata HOM05D004030 ORTHO05D004952 5.7e-35 152.9 157 51.6
unitig_899.g15398 Utricularia gibba HOM05D004030 ORTHO05D004952 2.8e-34 150.6 334 36.2
CDE10G0435 Ceratophyllum demersum HOM05D004030 ORTHO05D004952 6.5e-31 139.4 143 56.6
Aqoxy2G00428 Aquilegia oxysepala HOM05D004030 ORTHO05D004952 2.5e-30 137.5 155 51.6
Peaxi162Scf00912g00019 Petunia axillaris HOM05D004030 ORTHO05D004952 4.2e-30 136.7 103 68.9
Actinidia37045 Actinidia chinensis HOM05D004030 ORTHO05D004952 2.3e-28 131.0 256 38.3
CAN.G566.51 Capsicum annuum HOM05D004030 ORTHO05D004952 2.3e-28 131.0 194 45.9
Lsat_1_v5_gn_6_74880 Lactuca sativa HOM05D004030 ORTHO05D004952 3.0e-28 130.6 158 46.2
CSS0023477 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 3.4e-27 127.1 71 81.7
CSS0003365 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 1.3e-26 125.2 71 80.3
CBR_g31948 Chara braunii HOM05D004030 ORTHO05D004952 3.1e-25 120.6 194 37.1
Nitab4.5_0000271g0330 Nicotiana tabacum HOM05D004030 ORTHO05D004952 2.0e-24 117.9 107 56.1
Ah.16g108320 Amaranthus hybridus HOM05D004030 ORTHO05D004952 7.7e-24 115.9 69 73.9
SalBow5G5223 Salvia bowleyana HOM05D004030 ORTHO05D004952 7.7e-24 115.9 70 75.7
FAN23G1607 Fragaria x ananassa HOM05D000005 ORTHO05D000012 1.3e-23 115.2 89 64.0
SGA_v2.0_scaffold16G07708 Striga asiatica HOM05D004030 ORTHO05D004952 8.6e-23 112.5 117 51.3
Nitab4.5_0004602g0020 Nicotiana tabacum HOM05D004030 ORTHO05D004952 1.1e-22 112.1 129 48.8
SalBow5G1832 Salvia bowleyana HOM05D004030 ORTHO05D002854 5.2e-20 103.2 253 36.8
Pp3c22_6900 Physcomitrium patens HOM05D004030 ORTHO05D004952 9.8e-19 99.0 109 47.7
SalBow5G5317 Salvia bowleyana HOM05D004030 ORTHO05D004952 2.9e-18 97.4 268 34.7
Ah.16g108870 Amaranthus hybridus HOM05D004030 ORTHO05D004952 1.1e-17 95.5 142 43.0
Ah.16g108300 Amaranthus hybridus HOM05D004030 ORTHO05D004952 1.4e-17 95.1 142 43.0
Ah.16g108330 Amaranthus hybridus HOM05D004030 ORTHO05D004952 1.4e-17 95.1 142 43.0
SalBow5G5526 Salvia bowleyana HOM05D004030 ORTHO05D004952 2.7e-16 90.9 241 35.7
Ah.16g108890 Amaranthus hybridus HOM05D004030 ORTHO05D004952 4.6e-16 90.1 157 38.9
Lalb_Chr15g0086171 Lupinus albus HOM05D004030 ORTHO05D004952 1.1e-14 85.5 82 57.3
Lj5g0018916 Lotus japonicus HOM05D004030 ORTHO05D004952 7.3e-14 82.8 105 48.6
Pp3c21_660 Physcomitrium patens HOM05D004030 ORTHO05D004952 6.2e-13 79.7 168 32.7
MCO08G144 Micromonas commoda HOM05D004030 ORTHO05D004952 3.1e-12 77.4 99 39.4
TPR.G16979 Trifolium pratense HOM05D004030 ORTHO05D004952 4.4e-11 73.6 104 46.2
CSS0043633 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 2.2e-10 71.2 100 50.0
CSS0023566 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 3.7e-10 70.5 83 55.4
SalBow5G0967 Salvia bowleyana HOM05D004030 ORTHO05D004952 2.4e-09 67.8 72 59.7
Cpa.g.sc7.86 Carica papaya HOM05D004030 ORTHO05D033917 1.3e-07 62.0 158 32.9
Cre01.g021750 Chlamydomonas reinhardtii HOM05D004030 ORTHO05D004952 5.6e-06 56.6 129 32.6
FAN16G3751 Fragaria x ananassa HOM05D004030 ORTHO05D004952 5.6e-06 56.6 142 40.8
SalBow5G1360 Salvia bowleyana HOM05D004030 ORTHO05D004952 5.6e-06 56.6 58 53.4


User provided reference genes

Program Settings