Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G062000 Prunus persica HOM05D005280 ORTHO05D006253 9.7e-133 477.2 325 100.0
MD10G1279400 Malus domestica HOM05D005280 ORTHO05D006253 8.0e-127 457.6 325 95.4
MD05G1300300 Malus domestica HOM05D005280 ORTHO05D006253 4.4e-125 451.8 327 94.5
FAN16G3700 Fragaria x ananassa HOM05D005280 ORTHO05D006253 4.2e-112 408.7 314 92.4
PGR042G3394 Punica granatum HOM05D005280 ORTHO05D006253 8.0e-111 404.4 325 86.2
Manes.17G056200 Manihot esculenta HOM05D005280 ORTHO05D006253 1.3e-108 397.1 325 84.9
TWI38G0304 Tripterygium wilfordii HOM05D005280 ORTHO05D006253 1.8e-107 393.3 325 84.0
ECA236G4327 Erigeron canadensis HOM05D005280 ORTHO05D006253 1.6e-106 390.2 325 84.0
Lalb_Chr20g0117481 Lupinus albus HOM05D005280 ORTHO05D006253 1.0e-105 387.5 323 84.2
Sc05g0007070 Simmondsia chinensis HOM05D005280 ORTHO05D006253 1.3e-105 387.1 325 82.5
Lj6g0027668 Lotus japonicus HOM05D005280 ORTHO05D006253 1.1e-104 384.0 323 83.6
QL05p047377 Quercus lobata HOM05D005280 ORTHO05D006253 6.1e-103 378.3 324 80.6
AUR62015144 Chenopodium quinoa HOM05D005280 ORTHO05D006253 1.8e-102 376.7 323 81.7
Duzib160G0285 Durio zibethinus HOM05D005280 ORTHO05D006253 3.0e-102 375.9 324 83.0
AUR62017603 Chenopodium quinoa HOM05D005280 ORTHO05D006253 4.0e-102 375.6 323 81.4
Ah.01g013480 Amaranthus hybridus HOM05D005280 ORTHO05D006253 3.4e-101 372.5 323 80.2
SHI28515 Sapria himalayana HOM05D005280 ORTHO05D006253 9.8e-101 370.9 323 82.7
PGSC0003DMG400009000 Solanum tuberosum HOM05D005280 ORTHO05D006253 2.9e-100 369.4 325 80.6
Peaxi162Scf00871g00047 Petunia axillaris HOM05D005280 ORTHO05D006253 3.2e-99 365.9 325 80.3
PGSC0003DMG400008719 Solanum tuberosum HOM05D005280 ORTHO05D006253 5.4e-99 365.2 323 80.2
Solyc03g062940.3 Solanum lycopersicum HOM05D005280 ORTHO05D006253 7.0e-99 364.8 323 80.2
Sopen03g015240 Solanum pennellii HOM05D005280 ORTHO05D006253 7.0e-99 364.8 323 80.2
CAN.G206.30 Capsicum annuum HOM05D005280 ORTHO05D006253 7.8e-98 361.3 323 79.6
AT1G29260 Arabidopsis thaliana HOM05D005280 ORTHO05D006253 2.3e-97 359.8 323 80.8
HanXRQChr05g0139841 Helianthus annuus HOM05D005280 ORTHO05D006253 1.9e-96 356.7 313 82.7
Haze_06226 Corylus avellana HOM05D005280 ORTHO05D006253 2.8e-95 352.8 323 80.5
Lsat_1_v5_gn_7_24160 Lactuca sativa HOM05D005280 ORTHO05D006253 5.8e-93 345.1 325 79.1
Carub.0001s2739 Capsella rubella HOM05D005280 ORTHO05D006253 2.9e-92 342.8 323 78.6
Nitab4.5_0000294g0080 Nicotiana tabacum HOM05D005280 ORTHO05D006253 2.9e-92 342.8 315 78.7
Nitab4.5_0001235g0070 Nicotiana tabacum HOM05D005280 ORTHO05D006253 3.7e-92 342.4 315 78.7
Potri.004G057600 Populus trichocarpa HOM05D005280 ORTHO05D006253 3.7e-92 342.4 325 78.2
Actinidia39510 Actinidia chinensis HOM05D005280 ORTHO05D006253 7.8e-90 334.7 325 77.8
SGA_v2.0_scaffold1G00053 Striga asiatica HOM05D005280 ORTHO05D006253 1.7e-89 333.6 323 76.5
CARHR028510 Cardamine hirsuta HOM05D005280 ORTHO05D006253 3.0e-89 332.8 323 77.7
CANSAT80G2107 Cannabis sativa HOM05D005280 ORTHO05D006253 3.6e-87 325.9 325 78.2
Migut.M01035 Erythranthe guttata HOM05D005280 ORTHO05D006253 7.5e-85 318.2 323 75.2
DCAR_007943 Daucus carota HOM05D005280 ORTHO05D006253 8.3e-84 314.7 323 75.2
Lj1A206T60 Lonicera japonica HOM05D005280 ORTHO05D006253 4.1e-83 312.4 325 74.5
Thecc.06G170100 Theobroma cacao HOM05D005280 ORTHO05D006253 4.1e-83 312.4 323 76.2
Dinv16775 Davidia involucrata HOM05D005280 ORTHO05D006253 2.7e-82 309.7 286 82.5
Gohir.D10G037400 Gossypium hirsutum HOM05D005280 ORTHO05D006253 4.6e-82 308.9 324 75.9
Gohir.A10G036800 Gossypium hirsutum HOM05D005280 ORTHO05D006253 1.0e-81 307.8 324 75.9
Duzib192G0183 Durio zibethinus HOM05D005280 ORTHO05D006253 3.9e-81 305.8 323 75.9
Gorai.011G039400 Gossypium raimondii HOM05D005280 ORTHO05D006253 2.5e-80 303.1 323 75.2
RcHm_v2.0_Chr5g0010881 Rosa chinensis HOM05D005280 ORTHO05D006253 2.5e-80 303.1 259 93.4
EL10Ac9g22853 Beta vulgaris HOM05D005280 ORTHO05D006253 5.6e-80 302.0 323 74.6
FAN25G0161 Fragaria x ananassa HOM05D005280 ORTHO05D006253 5.6e-80 302.0 259 93.4
AL1G42940 Arabidopsis lyrata HOM05D005280 ORTHO05D006253 1.2e-79 300.8 323 74.3
FvH4_3g07730 Fragaria vesca HOM05D005280 ORTHO05D006253 2.1e-79 300.1 259 93.1
FAN11G1284 Fragaria x ananassa HOM05D005280 ORTHO05D006253 2.1e-79 300.1 259 92.3
FAN21G3704 Fragaria x ananassa HOM05D005280 ORTHO05D006253 2.1e-79 300.1 258 93.4
CSS0022801 Camellia sinensis var. sinensis HOM05D005280 ORTHO05D006253 2.0e-77 293.5 311 75.6
Sabra11G0048200 Salix brachista HOM05D005280 ORTHO05D006253 3.4e-77 292.7 275 80.0
BolC3t19816H Brassica oleracea HOM05D005280 ORTHO05D006253 1.3e-76 290.8 323 72.1
Cpa.g.sc7.74 Carica papaya HOM05D005280 ORTHO05D006253 2.7e-74 283.1 323 72.1
arahy.Tifrunner.gnm1.ann1.8U8ZZM Arachis hypogaea HOM05D005280 ORTHO05D006253 3.9e-73 279.3 325 72.3
arahy.Tifrunner.gnm1.ann1.IM81E3 Arachis hypogaea HOM05D005280 ORTHO05D006253 3.9e-73 279.3 325 72.3
Sabra04G0037300 Salix brachista HOM05D005280 ORTHO05D006253 2.8e-71 273.1 325 71.1
Ciclev10015974m.g Citrus clementina HOM05D005280 ORTHO05D006253 6.2e-71 271.9 257 86.4
Cfa000612 Carpinus fangiana HOM05D005280 ORTHO05D006253 3.1e-70 269.6 323 70.0
CiPaw.10G059400 Carya illinoinensis HOM05D005280 ORTHO05D006253 6.9e-70 268.5 259 84.9
Psat1g197880 Pisum sativum HOM05D005280 ORTHO05D006253 6.9e-70 268.5 254 86.6
MELO3C007211.2 Cucumis melo HOM05D005280 ORTHO05D006253 8.9e-70 268.1 255 87.1
Phvul.006G175800 Phaseolus vulgaris HOM05D005280 ORTHO05D006253 1.2e-69 267.7 259 84.9
Glyma.13G229400 Glycine max HOM05D005280 ORTHO05D006253 2.0e-69 266.9 260 83.5
Manes.16G040400 Manihot esculenta HOM05D005280 ORTHO05D006253 2.0e-69 266.9 325 69.2
ClCG01G023770 Citrullus lanatus HOM05D005280 ORTHO05D006253 2.6e-69 266.5 255 86.7
CsaV3_6G050930 Cucumis sativus L. HOM05D005280 ORTHO05D006253 2.6e-69 266.5 255 86.7
Dinv40681 Davidia involucrata HOM05D005280 ORTHO05D006253 7.6e-69 265.0 255 84.3
Atru.chr10.1658 Acer truncatum HOM05D005280 ORTHO05D006253 3.8e-68 262.7 257 84.0
Ca_00439_v3 Cicer arietinum L. HOM05D005280 ORTHO05D006253 6.4e-68 261.9 259 82.6
CDE10G0374 Ceratophyllum demersum HOM05D005280 ORTHO05D006253 8.4e-68 261.5 313 70.0
CBR_g23503 Chara braunii HOM05D005280 ORTHO05D006253 1.1e-67 261.2 322 63.0
Medtr2g016160 Medicago truncatula HOM05D005280 ORTHO05D006253 2.4e-67 260.0 258 82.9
THA.LOC104812639 Tarenaya hassleriana HOM05D005280 ORTHO05D006253 4.2e-67 259.2 258 82.6
vmacro16064 Vaccinium macrocarpon HOM05D005280 ORTHO05D006253 4.2e-67 259.2 250 87.2
Aa31LG6G6330 Aethionema arabicum HOM05D005280 ORTHO05D006253 2.7e-66 256.5 257 83.3
Rhsim02G0143200 Rhododendron simsii HOM05D005280 ORTHO05D006253 6.0e-66 255.4 250 86.0
THA.LOC104804949 Tarenaya hassleriana HOM05D005280 ORTHO05D006253 1.7e-65 253.8 257 82.5
BcaC05g26943 Brassica carinata HOM05D005280 ORTHO05D006253 2.5e-64 250.0 258 81.4
A09p37140 Brassica napus HOM05D005280 ORTHO05D006253 2.5e-64 250.0 258 81.4
C05p27910 Brassica napus HOM05D005280 ORTHO05D006253 2.5e-64 250.0 258 81.4
BolC5t31517H Brassica oleracea HOM05D005280 ORTHO05D006253 2.5e-64 250.0 258 81.4
BraA09t39230Z Brassica rapa HOM05D005280 ORTHO05D006253 2.5e-64 250.0 258 81.4
Hma1.2p1_1912F.1_g307320 Hydrangea macrophylla HOM05D005280 ORTHO05D006253 2.5e-64 250.0 149 77.9
Glyma.15G083100 Glycine max HOM05D005280 ORTHO05D006253 3.3e-64 249.6 149 79.2
Thhalv10008237m.g Eutrema salsugineum HOM05D005280 ORTHO05D006253 4.3e-64 249.2 257 80.9
Sp1g25120 Schrenkiella parvula HOM05D005280 ORTHO05D006253 4.3e-64 249.2 256 81.6
Sed0011601 Sechium edule HOM05D005280 ORTHO05D006253 7.3e-64 248.4 149 79.2
VMungo0540G1202 Vigna mungo HOM05D005280 ORTHO05D006253 9.6e-64 248.1 149 79.2
SEGI_31924 Sequoiadendron giganteum HOM05D005280 ORTHO05D006253 1.3e-63 247.7 324 65.1
COL.COLO4_31288 Corchorus olitorius HOM05D005280 ORTHO05D006253 2.8e-63 246.5 149 79.9
Cc02_g15040 Coffea canephora HOM05D005280 ORTHO05D006253 6.2e-63 245.4 149 77.9
unitig_699.g19366 Utricularia gibba HOM05D005280 ORTHO05D006253 5.3e-62 242.3 255 80.4
Nn1g04427 Nelumbo nucifera HOM05D005280 ORTHO05D006253 6.9e-62 241.9 151 75.5
TAR629G2088 Trochodendron aralioides HOM05D005280 ORTHO05D006253 2.0e-61 240.4 151 73.5
BcaC01g00082 Brassica carinata HOM05D005280 ORTHO05D006253 4.5e-61 239.2 149 73.8
C03p75590 Brassica napus HOM05D005280 ORTHO05D006253 4.5e-61 239.2 149 73.8
BcaB07g32507 Brassica carinata HOM05D005280 ORTHO05D006253 9.9e-61 238.0 149 73.8
BraA08t34477Z Brassica rapa HOM05D005280 ORTHO05D006253 9.9e-61 238.0 149 73.2
BcaB03g12145 Brassica carinata HOM05D005280 ORTHO05D006253 1.7e-60 237.3 149 73.8
MBI05_g10770_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 2.2e-60 236.9 151 70.9
MBI07_g43934_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 2.2e-60 236.9 151 71.5
PRCOL_00004365 Prasinoderma coloniale HOM05D005280 ORTHO05D006253 2.9e-60 236.5 338 53.8
HPP92_008751 Vanilla planifolia HOM05D005280 ORTHO05D006253 4.9e-60 235.7 258 78.3
PSO229G0003 Papaver somniferum HOM05D005280 ORTHO05D006253 1.4e-59 234.2 149 73.2
Aqoxy170s003 Aquilegia oxysepala HOM05D005280 ORTHO05D006253 1.9e-59 233.8 151 71.5
Aqoxy7G03216 Aquilegia oxysepala HOM05D005280 ORTHO05D006253 1.9e-59 233.8 151 71.5
PSO675G8759 Papaver somniferum HOM05D005280 ORTHO05D006253 1.9e-59 233.8 149 73.2
MSTRG.7412 Avicennia marina HOM05D005280 ORTHO05D006253 2.1e-58 230.3 150 71.3
Pp3c17_8040 Physcomitrium patens HOM05D005280 ORTHO05D006253 2.7e-58 229.9 324 61.7
Mapoly0030s0014 Marchantia polymorpha HOM05D005280 ORTHO05D006253 3.3e-56 223.0 324 61.4
Potri.011G066600 Populus trichocarpa HOM05D005280 ORTHO05D006253 6.4e-52 208.8 209 81.8
AagrBONN_evm.TU.Sc2ySwM_117.3414 Anthoceros agrestis HOM05D005280 ORTHO05D006253 9.3e-51 204.9 313 63.3
SMO119G0322 Selaginella moellendorffii HOM05D005280 ORTHO05D006253 3.0e-49 199.9 324 60.5
A08p25250 Brassica napus HOM05D005280 ORTHO05D006253 4.9e-44 182.6 149 59.1
Zm00001eb238680 Zea mays HOM05D005280 ORTHO05D006253 8.4e-44 181.8 149 57.0
PSO782G3364 Papaver somniferum HOM05D005280 ORTHO05D006253 2.5e-43 180.3 121 69.4
Pp3c15_2410 Physcomitrium patens HOM05D005280 ORTHO05D006253 9.3e-43 178.3 312 58.0
Cre17.g730200 Chlamydomonas reinhardtii HOM05D005280 ORTHO05D006253 1.2e-42 177.9 147 55.1
AUR62034161 Chenopodium quinoa HOM05D005280 ORTHO05D006253 1.0e-41 174.9 311 42.1
TPR.G11693 Trifolium pratense HOM05D005280 ORTHO05D006253 3.9e-41 172.9 93 81.7
Aqoxy1G02047 Aquilegia oxysepala HOM05D005280 ORTHO05D006253 4.5e-37 159.5 112 67.9
MBI16_g15539_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 2.5e-32 143.7 320 30.3
ATR0706G060 Amborella trichopoda HOM05D005280 ORTHO05D006253 2.0e-29 134.0 120 57.5
MCO15G120 Micromonas commoda HOM05D005280 ORTHO05D006253 1.0e-28 131.7 113 55.8
AUR62014277 Chenopodium quinoa HOM05D005280 ORTHO05D006253 2.9e-28 130.2 93 61.3
MBI16_g15538_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 3.2e-27 126.7 320 28.1
Dinv41375 Davidia involucrata HOM05D000140 ORTHO05D000087 6.5e-12 75.9 133 39.1
MBI16_g13364_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 8.5e-12 75.5 87 46.0
MBI16_g04072_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 1.9e-11 74.3 87 49.4
FAN14G0286 Fragaria x ananassa HOM05D005280 ORTHO05D019446 2.5e-11 73.9 111 43.2
Hma1.2p1_1912F.1_g307330 Hydrangea macrophylla HOM05D019969 ORTHO05D019446 7.2e-11 72.4 77 50.6
Aqoxy1G02046 Aquilegia oxysepala HOM05D019969 ORTHO05D019446 4.7e-10 69.7 73 49.3
MBI06_g08595_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 8.8e-09 65.5 88 38.6
VMungo1383G1864 Vigna mungo HOM05D005280 ORTHO05D006253 8.8e-09 65.5 37 78.4
arahy.Tifrunner.gnm1.ann1.HIJE33 Arachis hypogaea HOM05D005280 ORTHO05D006253 3.3e-08 63.5 61 49.2
MBI06_g08594_MAGBIO Magnolia biondii HOM05D038649 ORTHO05D006253 2.8e-07 60.5 65 44.6
VMungo0331G0944 Vigna mungo HOM05D005280 ORTHO05D006253 8.2e-07 58.9 36 72.2
BolC3t13893H Brassica oleracea HOM05D000347 ORTHO05D001997 1.4e-06 58.2 140 27.9
ATR0829G129 Amborella trichopoda HOM05D050206 ORTHO05D038281 5.3e-06 56.2 316 22.8


User provided reference genes

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