Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G059900 Prunus persica HOM05D005057 ORTHO05D006570 6.6e-268 926.8 464 100.0
MD10G1281300 Malus domestica HOM05D005057 ORTHO05D006570 1.1e-235 819.7 464 89.4
RcHm_v2.0_Chr5g0010551 Rosa chinensis HOM05D005057 ORTHO05D006570 7.9e-221 770.4 465 85.4
FAN07G2484 Fragaria x ananassa HOM05D005057 ORTHO05D006570 1.1e-209 733.4 463 82.3
FvH4_3g07940 Fragaria vesca HOM05D005057 ORTHO05D006570 3.2e-206 721.8 454 82.4
CiPaw.09G069000 Carya illinoinensis HOM05D005057 ORTHO05D006570 7.2e-206 720.7 467 79.4
CANSAT35G0522 Cannabis sativa HOM05D005057 ORTHO05D006570 3.3e-203 711.8 460 79.1
Ciclev10014965m.g Citrus clementina HOM05D005057 ORTHO05D006570 5.5e-198 694.5 469 76.3
Actinidia16804 Actinidia chinensis HOM05D005057 ORTHO05D006570 9.4e-198 693.7 448 79.5
ClCG03G007800 Citrullus lanatus HOM05D005057 ORTHO05D006570 4.7e-197 691.4 460 77.6
Medtr2g015860 Medicago truncatula HOM05D005057 ORTHO05D006570 4.7e-197 691.4 464 76.1
Gorai.010G158900 Gossypium raimondii HOM05D005057 ORTHO05D006570 8.8e-196 687.2 451 78.3
Hma1.2p1_0155F.1_g068170 Hydrangea macrophylla HOM05D005057 ORTHO05D006570 1.2e-195 686.8 409 82.9
MELO3C002642.2 Cucumis melo HOM05D005057 ORTHO05D006570 4.4e-195 684.9 464 76.5
Migut.H01447 Erythranthe guttata HOM05D005057 ORTHO05D006570 2.2e-194 682.6 471 74.7
Sabra11G0046800 Salix brachista HOM05D005057 ORTHO05D006570 8.3e-194 680.6 471 75.4
Thecc.06G172400 Theobroma cacao HOM05D005057 ORTHO05D006570 8.3e-194 680.6 462 76.2
GSVIVG01021196001 Vitis vinifera HOM05D005057 ORTHO05D006570 3.1e-193 678.7 462 75.8
CsaV3_1G033430 Cucumis sativus L. HOM05D005057 ORTHO05D006570 4.1e-193 678.3 464 75.4
Manes.16G037800 Manihot esculenta HOM05D005057 ORTHO05D006570 7.0e-193 677.6 461 75.3
Gohir.A06G130800 Gossypium hirsutum HOM05D005057 ORTHO05D006570 1.2e-192 676.8 451 77.4
Eucgr.D00512 Eucalyptus grandis HOM05D005057 ORTHO05D006570 1.6e-192 676.4 465 75.3
PSO063G4235 Papaver somniferum HOM05D005057 ORTHO05D006570 4.5e-192 674.9 470 73.4
FvH4_4g20380 Fragaria vesca HOM05D005057 ORTHO05D006570 3.8e-191 671.8 384 87.5
Sopen02g021880 Solanum pennellii HOM05D005057 ORTHO05D006570 3.8e-191 671.8 455 74.9
Glyma.13G230500 Glycine max HOM05D005057 ORTHO05D006570 6.5e-191 671.0 470 73.6
PGR004G2757 Punica granatum HOM05D005057 ORTHO05D006570 6.5e-191 671.0 402 82.3
Aqoxy4G00443 Aquilegia oxysepala HOM05D005057 ORTHO05D006570 1.1e-190 670.2 396 82.6
Rhsim13G0191300 Rhododendron simsii HOM05D005057 ORTHO05D006570 5.5e-190 667.9 386 85.0
Potri.011G065000 Populus trichocarpa HOM05D005057 ORTHO05D006570 1.2e-189 666.8 470 75.3
Lalb_Chr15g0089481 Lupinus albus HOM05D005057 ORTHO05D006570 6.1e-189 664.5 422 78.9
Atru.chr10.1683 Acer truncatum HOM05D005057 ORTHO05D006570 8.0e-189 664.1 503 70.0
TWI38G0714 Tripterygium wilfordii HOM05D005057 ORTHO05D006570 2.0e-187 659.4 473 72.9
arahy.Tifrunner.gnm1.ann1.9TM733 Arachis hypogaea HOM05D005057 ORTHO05D006570 1.3e-186 656.8 404 79.7
arahy.Tifrunner.gnm1.ann1.E17GNY Arachis hypogaea HOM05D005057 ORTHO05D006570 1.3e-186 656.8 404 79.7
CAN.G370.63 Capsicum annuum HOM05D005057 ORTHO05D006570 2.8e-186 655.6 386 82.6
Lj6g0017686 Lotus japonicus HOM05D005057 ORTHO05D006570 4.9e-186 654.8 492 70.3
DCAR_004016 Daucus carota HOM05D005057 ORTHO05D006570 3.3e-182 642.1 449 75.3
ECA236G3111 Erigeron canadensis HOM05D005057 ORTHO05D006570 2.1e-181 639.4 457 72.6
Cc02_g14710 Coffea canephora HOM05D005057 ORTHO05D006570 2.8e-181 639.0 485 69.1
Sc12g0008060 Simmondsia chinensis HOM05D005057 ORTHO05D006570 2.8e-181 639.0 405 78.8
HanXRQChr13g0397391 Helianthus annuus HOM05D005057 ORTHO05D006570 4.7e-181 638.3 406 78.3
Ca_00428_v3 Cicer arietinum L. HOM05D005057 ORTHO05D006570 1.0e-180 637.1 385 82.6
ATR0602G189 Amborella trichopoda HOM05D005057 ORTHO05D006570 5.2e-180 634.8 443 74.0
VMungo0540G0206 Vigna mungo HOM05D005057 ORTHO05D006570 1.7e-178 629.8 420 75.0
Oeu041787.3 Olea europaea HOM05D005057 ORTHO05D006570 4.9e-178 628.2 389 79.7
SalBow7G0088 Salvia bowleyana HOM05D005057 ORTHO05D006570 8.3e-178 627.5 432 75.5
vmacro03932 Vaccinium macrocarpon HOM05D005057 ORTHO05D006570 8.3e-178 627.5 593 59.7
SGA_v2.0_scaffold307G48045 Striga asiatica HOM05D005057 ORTHO05D006570 1.6e-176 623.2 476 68.3
FAN11G1223 Fragaria x ananassa HOM05D005057 ORTHO05D006570 1.5e-174 616.7 496 68.8
AL4G30000 Arabidopsis lyrata HOM05D005057 ORTHO05D006570 1.9e-174 616.3 393 77.6
A05p11560 Brassica napus HOM05D005057 ORTHO05D006570 3.3e-174 615.5 431 73.1
Sp4g16440 Schrenkiella parvula HOM05D005057 ORTHO05D006570 3.3e-174 615.5 429 72.7
AT2G34090 Arabidopsis thaliana HOM05D005057 ORTHO05D006570 5.6e-174 614.8 431 72.2
EL10Ac8g20510 Beta vulgaris HOM05D005057 ORTHO05D006570 7.3e-174 614.4 513 64.9
BcaB02g10615 Brassica carinata HOM05D005057 ORTHO05D006570 1.6e-173 613.2 393 77.1
Carub.0004s1572 Capsella rubella HOM05D005057 ORTHO05D006570 8.0e-173 610.9 428 72.4
Haze_06250 Corylus avellana HOM05D005057 ORTHO05D006570 1.0e-172 610.5 429 74.6
THA.LOC104814250 Tarenaya hassleriana HOM05D005057 ORTHO05D006570 5.2e-172 608.2 432 72.2
MSTRG.13217 Avicennia marina HOM05D005057 ORTHO05D006570 8.9e-172 607.4 476 68.3
Thhalv10016658m.g Eutrema salsugineum HOM05D005057 ORTHO05D006570 8.9e-172 607.4 393 77.1
BraA05t20104Z Brassica rapa HOM05D005057 ORTHO05D006570 1.2e-171 607.1 435 71.5
Aa31LG9G13900 Aethionema arabicum HOM05D005057 ORTHO05D006570 2.2e-170 602.8 449 69.5
C04p15030 Brassica napus HOM05D005057 ORTHO05D006570 1.4e-169 600.1 416 72.8
MBI06_g25988_MAGBIO Magnolia biondii HOM05D005057 ORTHO05D006570 1.4e-169 600.1 433 72.3
Ah.09g233650 Amaranthus hybridus HOM05D005057 ORTHO05D006570 2.4e-169 599.4 400 75.5
CARHR128190 Cardamine hirsuta HOM05D005057 ORTHO05D006570 2.4e-169 599.4 386 76.7
CDE10G0488 Ceratophyllum demersum HOM05D005057 ORTHO05D006570 9.2e-169 597.4 405 75.3
Phvul.006G176700 Phaseolus vulgaris HOM05D005057 ORTHO05D006570 3.5e-168 595.5 478 66.9
BolC4t23078H Brassica oleracea HOM05D005057 ORTHO05D006570 1.0e-167 594.0 435 70.8
Lj2A297G103 Lonicera japonica HOM05D005057 ORTHO05D006570 3.9e-167 592.0 381 77.7
Gohir.D06G136700 Gossypium hirsutum HOM05D005057 ORTHO05D006570 6.6e-167 591.3 416 73.3
AUR62031175 Chenopodium quinoa HOM05D005057 ORTHO05D006570 2.8e-165 585.9 354 81.9
FAN25G1331 Fragaria x ananassa HOM05D005057 ORTHO05D006570 3.7e-162 575.5 458 69.9
FAN16G2413 Fragaria x ananassa HOM05D005057 ORTHO05D006570 4.7e-157 558.5 454 68.5
Sed0014368 Sechium edule HOM05D005057 ORTHO05D006570 1.8e-156 556.6 464 65.3
Aqoxy12s001 Aquilegia oxysepala HOM05D005057 ORTHO05D006570 2.3e-156 556.2 346 81.2
Dinv04618 Davidia involucrata HOM05D005057 ORTHO05D006570 3.4e-155 552.4 450 65.6
COL.COLO4_31315 Corchorus olitorius HOM05D005057 ORTHO05D006570 3.7e-154 548.9 391 71.9
AagrBONN_evm.TU.Sc2ySwM_344.2851 Anthoceros agrestis HOM05D005057 ORTHO05D006570 1.7e-151 540.0 451 63.4
Mapoly0152s0011 Marchantia polymorpha HOM05D005057 ORTHO05D006570 1.1e-148 530.8 402 68.7
Duzib160G0357 Durio zibethinus HOM05D005057 ORTHO05D006570 4.0e-148 528.9 461 61.8
Hund21184 Selenicereus undatus HOM05D005057 ORTHO05D006570 5.2e-148 528.5 407 69.8
Hma1.2p1_0155F.1_g068180 Hydrangea macrophylla HOM05D005057 ORTHO05D006570 2.1e-144 516.5 358 74.3
SMO142G0032 Selaginella moellendorffii HOM05D005057 ORTHO05D006570 4.6e-144 515.4 382 67.5
Lsat_1_v5_gn_7_23040 Lactuca sativa HOM05D005057 ORTHO05D006570 6.0e-144 515.0 431 65.2
Pp3c16_13000 Physcomitrium patens HOM05D005057 ORTHO05D006570 6.6e-143 511.5 398 66.3
AUR62036592 Chenopodium quinoa HOM05D005057 ORTHO05D006570 2.5e-142 509.6 391 67.8
Zm00001eb162010 Zea mays HOM05D005057 ORTHO05D006570 6.6e-135 485.0 328 75.3
Cpa.g.sc7.56 Carica papaya HOM05D005057 ORTHO05D006570 1.1e-129 467.6 402 63.4
PSO782G3653 Papaver somniferum HOM05D005057 ORTHO05D006570 4.6e-128 462.2 367 68.9
Nn1g09052 Nelumbo nucifera HOM05D005057 ORTHO05D006570 2.7e-120 436.4 262 83.2
Psat1g199000 Pisum sativum HOM05D005057 ORTHO05D006570 1.9e-118 430.3 299 75.6
PRCOL_00006187 Prasinoderma coloniale HOM05D005057 ORTHO05D006570 7.4e-118 428.3 403 54.8
TPR.G11697 Trifolium pratense HOM05D005057 ORTHO05D006570 1.9e-113 413.7 278 75.5
MCO11G641 Micromonas commoda HOM05D005057 ORTHO05D006570 6.7e-111 405.2 394 55.1
Cre01.g033700 Chlamydomonas reinhardtii HOM05D005057 ORTHO05D006570 6.9e-108 395.2 471 48.8
Solyc02g076950.2 Solanum lycopersicum HOM05D005057 ORTHO05D006570 5.1e-95 352.4 251 74.9
Peaxi162Scf00261g01011 Petunia axillaris HOM05D005057 ORTHO05D006570 6.5e-90 335.5 203 76.4
QL05p046449 Quercus lobata HOM05D005057 ORTHO05D006570 9.4e-89 331.6 538 41.3
Nitab4.5_0000681g0230 Nicotiana tabacum HOM05D005057 ORTHO05D006570 4.8e-85 319.3 257 71.2
Nitab4.5_0003322g0070 Nicotiana tabacum HOM05D005057 ORTHO05D006570 9.1e-84 315.1 250 71.2
Lalb_Chr18g0059151 Lupinus albus HOM05D005057 ORTHO05D006570 1.6e-80 304.3 251 68.1
Nitab4.5_0003322g0060 Nicotiana tabacum HOM05D005057 ORTHO05D006570 2.7e-80 303.5 185 76.2
Nitab4.5_0000681g0220 Nicotiana tabacum HOM05D005057 ORTHO05D006570 4.0e-79 299.7 185 74.6
TAR626G1061 Trochodendron aralioides HOM05D005057 ORTHO05D006570 2.0e-78 297.4 173 85.0
MD05G1302500 Malus domestica HOM05D005057 ORTHO05D006570 5.4e-76 289.3 333 52.9
Lalb_Chr18g0059161 Lupinus albus HOM05D005057 ORTHO05D006570 4.7e-72 276.2 197 68.5
QL05p046461 Quercus lobata HOM05D005057 ORTHO05D006570 8.8e-71 271.9 171 80.7
TPR.G30010 Trifolium pratense HOM05D005057 ORTHO05D006570 9.2e-68 261.9 196 70.9
unitig_22.g6755 Utricularia gibba HOM05D005057 ORTHO05D006570 6.6e-66 255.8 155 80.6
Nn1g09100 Nelumbo nucifera HOM05D005057 ORTHO05D006570 3.6e-64 250.0 207 65.7
Os01g0613900 Oryza sativa ssp. japonica HOM05D005057 ORTHO05D006570 6.4e-61 239.2 137 84.7
Ca_30957_v3 Cicer arietinum L. HOM05D005057 ORTHO05D006570 1.6e-59 234.6 170 72.4
BcaC04g22954 Brassica carinata HOM05D005057 ORTHO05D006570 3.5e-59 233.4 221 60.6
C09p55570 Brassica napus HOM05D005057 ORTHO05D006570 3.5e-59 233.4 221 60.6
BolC9t54241H Brassica oleracea HOM05D005057 ORTHO05D006570 3.5e-59 233.4 221 60.6
BcaC01g06160 Brassica carinata HOM05D005057 ORTHO05D006570 2.3e-55 220.7 225 60.0
HPP92_020184 Vanilla planifolia HOM05D005057 ORTHO05D006570 8.9e-55 218.8 168 64.3
Psat1g199040 Pisum sativum HOM05D005057 ORTHO05D006570 5.0e-50 203.0 141 70.2
CSS0031450 Camellia sinensis var. sinensis HOM05D005057 ORTHO05D006570 4.7e-48 196.4 130 73.8
TAR626G0988 Trochodendron aralioides HOM05D005057 ORTHO05D006570 2.1e-43 181.0 152 68.4
HPP92_020166 Vanilla planifolia HOM05D005057 ORTHO05D006570 3.0e-42 177.2 133 69.2
unitig_22.g6754 Utricularia gibba HOM05D005057 ORTHO05D006570 2.0e-38 164.5 144 59.7
SEGI_02925 Sequoiadendron giganteum HOM05D005057 ORTHO05D006570 2.9e-37 160.6 92 82.6
unitig_22.g6756 Utricularia gibba HOM05D005057 ORTHO05D006570 3.0e-34 150.6 121 66.9
COL.COLO4_25087 Corchorus olitorius HOM05D005057 ORTHO05D006570 6.4e-29 132.9 74 81.1
RcHm_v2.0_Chr5g0010591 Rosa chinensis HOM05D005057 ORTHO05D006570 2.4e-28 131.0 78 83.3
Glyma.14G170500 Glycine max HOM05D005057 ORTHO05D006570 5.4e-28 129.8 122 60.7
BolC4t26729H Brassica oleracea HOM05D005057 ORTHO05D006570 7.8e-27 125.9 96 69.8
BolC7t41970H Brassica oleracea HOM05D005057 ORTHO05D006570 3.0e-26 124.0 96 68.8
MD16G1033100 Malus domestica HOM05D005057 ORTHO05D006570 1.8e-23 114.8 62 90.3
HPP92_020183 Vanilla planifolia HOM05D005057 ORTHO05D006570 1.5e-22 111.7 86 65.1
arahy.Tifrunner.gnm1.ann1.XF9LE9 Arachis hypogaea HOM05D005057 ORTHO05D011377 2.2e-21 107.8 163 41.7
PSO063G0949 Papaver somniferum HOM05D005057 ORTHO05D006570 1.4e-20 105.1 179 41.3
Medtr2g015780 Medicago truncatula HOM05D005057 ORTHO05D006570 4.0e-15 87.0 58 74.1
RcHm_v2.0_Chr5g0010491 Rosa chinensis HOM05D005057 ORTHO05D006570 2.4e-12 77.8 154 36.4
BcaC01g03610 Brassica carinata HOM05D005057 ORTHO05D019871 2.1e-11 74.7 73 50.7
BolC8t49834H Brassica oleracea HOM05D005057 ORTHO05D019871 5.3e-07 60.1 132 32.6
RcHm_v2.0_Chr6g0290121 Rosa chinensis HOM05D005057 ORTHO05D346767 2.6e-06 57.8 33 81.8
CDE04G0254 Ceratophyllum demersum HOM05D001182 ORTHO05D008051 4.5e-06 57.0 46 54.3


User provided reference genes

Program Settings