Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G059500 Prunus persica HOM05D005954 ORTHO05D007347 3.5e-72 275.0 156 100.0
FAN21G0082 Fragaria x ananassa HOM05D005954 ORTHO05D007347 1.8e-52 209.5 158 81.0
MD10G1282300 Malus domestica HOM05D005954 ORTHO05D007347 2.4e-52 209.1 157 79.0
FvH4_3g07980 Fragaria vesca HOM05D005954 ORTHO05D007347 4.0e-52 208.4 158 80.4
FAN16G0914 Fragaria x ananassa HOM05D005954 ORTHO05D007347 4.0e-52 208.4 158 80.4
FAN11G0799 Fragaria x ananassa HOM05D005954 ORTHO05D007347 1.7e-50 203.0 158 79.1
RcHm_v2.0_Chr5g0010351 Rosa chinensis HOM05D005954 ORTHO05D007347 2.9e-50 202.2 158 77.8
Haze_06257 Corylus avellana HOM05D005954 ORTHO05D007347 1.6e-48 196.4 165 74.5
TAR626G1287 Trochodendron aralioides HOM05D005954 ORTHO05D007347 5.8e-43 177.9 157 72.0
Dinv04624 Davidia involucrata HOM05D005954 ORTHO05D007347 1.3e-42 176.8 156 69.2
Gohir.A06G134004 Gossypium hirsutum HOM05D005954 ORTHO05D007347 8.4e-42 174.1 155 71.6
MD05G1303200 Malus domestica HOM05D005954 ORTHO05D007347 8.4e-42 174.1 158 70.3
Potri.011G064800 Populus trichocarpa HOM05D005954 ORTHO05D007347 1.1e-41 173.7 154 68.2
CsaV3_6G050830 Cucumis sativus L. HOM05D005954 ORTHO05D007347 1.4e-41 173.3 159 69.8
MELO3C007218.2 Cucumis melo HOM05D005954 ORTHO05D007347 2.5e-41 172.6 159 70.4
Gohir.D06G136500 Gossypium hirsutum HOM05D005954 ORTHO05D007347 5.5e-41 171.4 156 70.5
Gorai.010G158700 Gossypium raimondii HOM05D005954 ORTHO05D007347 5.5e-41 171.4 156 70.5
Nn1g09054 Nelumbo nucifera HOM05D005954 ORTHO05D007347 1.6e-40 169.9 156 67.3
ClCG01G023670 Citrullus lanatus HOM05D005954 ORTHO05D007347 2.1e-40 169.5 159 69.8
Manes.17G054200 Manihot esculenta HOM05D005954 ORTHO05D007347 2.7e-40 169.1 158 67.1
QL05p046336 Quercus lobata HOM05D005954 ORTHO05D007347 4.6e-40 168.3 161 67.7
MD16G1032000 Malus domestica HOM05D005954 ORTHO05D007347 6.0e-40 167.9 157 69.4
MD10G1067400 Malus domestica HOM05D005954 ORTHO05D007347 3.9e-39 165.2 149 68.5
CANSAT11G0094 Cannabis sativa HOM05D005954 ORTHO05D007347 6.7e-39 164.5 165 66.7
AUR62036591 Chenopodium quinoa HOM05D005954 ORTHO05D007347 6.7e-39 164.5 155 69.0
AUR62031174 Chenopodium quinoa HOM05D005954 ORTHO05D007347 8.7e-39 164.1 133 75.2
Thecc.06G173000 Theobroma cacao HOM05D005954 ORTHO05D007347 1.1e-38 163.7 161 65.8
GSVIVG01021193001 Vitis vinifera HOM05D005954 ORTHO05D007347 1.1e-38 163.7 106 83.0
Gohir.D05G158700 Gossypium hirsutum HOM05D005954 ORTHO05D007347 1.5e-38 163.3 159 67.3
Gohir.A05G156000 Gossypium hirsutum HOM05D005954 ORTHO05D007347 1.9e-38 162.9 159 67.3
Cpa.g.sc7.59 Carica papaya HOM05D005954 ORTHO05D007347 2.5e-38 162.5 164 67.7
Gorai.009G163700 Gossypium raimondii HOM05D005954 ORTHO05D007347 2.5e-38 162.5 159 67.3
Ah.09g233660 Amaranthus hybridus HOM05D005954 ORTHO05D007347 1.6e-37 159.8 133 74.4
Sed0006910 Sechium edule HOM05D005954 ORTHO05D007347 1.6e-37 159.8 159 66.7
Cfa000593 Carpinus fangiana HOM05D005954 ORTHO05D007347 2.2e-37 159.5 165 64.2
Atru.chr10.1690 Acer truncatum HOM05D005954 ORTHO05D007347 8.2e-37 157.5 159 64.2
CiPaw.09G068600 Carya illinoinensis HOM05D005954 ORTHO05D007347 8.2e-37 157.5 167 64.1
TWI38G2142 Tripterygium wilfordii HOM05D005954 ORTHO05D007347 1.1e-36 157.1 157 65.0
Manes.16G037400 Manihot esculenta HOM05D005954 ORTHO05D007347 2.4e-36 156.0 154 64.9
PGR004G0539 Punica granatum HOM05D005954 ORTHO05D007347 6.9e-36 154.5 159 65.4
PGR004G0737 Punica granatum HOM05D005954 ORTHO05D007347 6.9e-36 154.5 159 65.4
Phvul.006G176900 Phaseolus vulgaris HOM05D005954 ORTHO05D007347 9.0e-36 154.1 152 66.4
Phvul.006G176980 Phaseolus vulgaris HOM05D005954 ORTHO05D007347 9.0e-36 154.1 152 66.4
PSO541G3988 Papaver somniferum HOM05D005954 ORTHO05D007347 1.5e-35 153.3 151 64.9
PSO675G5672 Papaver somniferum HOM05D005954 ORTHO05D007347 1.5e-35 153.3 151 64.9
Glyma.13G230600 Glycine max HOM05D005954 ORTHO05D007347 2.0e-35 152.9 148 64.9
CSS0014251 Camellia sinensis var. sinensis HOM05D005954 ORTHO05D007347 3.4e-35 152.1 143 69.9
Glyma.15G082000 Glycine max HOM05D005954 ORTHO05D007347 3.4e-35 152.1 149 65.8
Duzib160G0806 Durio zibethinus HOM05D005954 ORTHO05D007347 4.5e-35 151.8 159 64.8
Ciclev10017015m.g Citrus clementina HOM05D005954 ORTHO05D007347 7.7e-35 151.0 162 63.0
arahy.Tifrunner.gnm1.ann1.N07IEU Arachis hypogaea HOM05D005954 ORTHO05D007347 2.9e-34 149.1 153 62.7
CDE05G1458 Ceratophyllum demersum HOM05D005954 ORTHO05D007347 5.0e-34 148.3 133 68.4
Aqoxy1G03187 Aquilegia oxysepala HOM05D005954 ORTHO05D007347 6.5e-34 147.9 131 71.0
Sabra11G0046600 Salix brachista HOM05D005954 ORTHO05D007347 1.1e-33 147.1 197 54.3
Lj6g0020578 Lotus japonicus HOM05D005954 ORTHO05D007347 1.4e-33 146.7 153 64.1
EL10Ac8g20509 Beta vulgaris HOM05D005954 ORTHO05D007347 2.7e-32 142.5 125 71.2
MSTRG.14726 Avicennia marina HOM05D005954 ORTHO05D007347 7.9e-32 141.0 138 65.2
Eucgr.D00519 Eucalyptus grandis HOM05D005954 ORTHO05D007347 1.8e-31 139.8 159 62.3
Peaxi162Scf00061g00155 Petunia axillaris HOM05D005954 ORTHO05D007347 1.8e-31 139.8 138 64.5
C07p16610 Brassica napus HOM05D005954 ORTHO05D007347 3.9e-31 138.7 135 65.9
AL1G42790 Arabidopsis lyrata HOM05D005954 ORTHO05D007347 5.1e-31 138.3 157 61.8
arahy.Tifrunner.gnm1.ann1.YBYE48 Arachis hypogaea HOM05D005954 ORTHO05D007347 5.1e-31 138.3 153 61.4
TPR.G11659 Trifolium pratense HOM05D005954 ORTHO05D007347 8.8e-31 137.5 152 60.5
A08p25330 Brassica napus HOM05D005954 ORTHO05D007347 1.1e-30 137.1 164 59.8
BraA08t34485Z Brassica rapa HOM05D005954 ORTHO05D007347 1.1e-30 137.1 164 59.8
Aa31LG5G21180 Aethionema arabicum HOM05D005954 ORTHO05D007347 1.5e-30 136.7 142 64.1
Thhalv10008967m.g Eutrema salsugineum HOM05D005954 ORTHO05D007347 1.5e-30 136.7 137 65.0
C03p75510 Brassica napus HOM05D005954 ORTHO05D007347 2.0e-30 136.3 156 60.3
BcaNung06433 Brassica carinata HOM05D005954 ORTHO05D007347 2.5e-30 136.0 147 62.6
BcaB07g32486 Brassica carinata HOM05D005954 ORTHO05D007347 3.3e-30 135.6 139 65.5
Hund23979 Selenicereus undatus HOM05D005954 ORTHO05D007347 4.3e-30 135.2 150 60.7
AT1G29070 Arabidopsis thaliana HOM05D005954 ORTHO05D007347 5.7e-30 134.8 157 59.9
A09p37340 Brassica napus HOM05D005954 ORTHO05D007347 5.7e-30 134.8 138 64.5
BraA09t39243Z Brassica rapa HOM05D005954 ORTHO05D007347 5.7e-30 134.8 138 64.5
Carub.0001s2727 Capsella rubella HOM05D005954 ORTHO05D007347 5.7e-30 134.8 155 59.4
Sp1g25010 Schrenkiella parvula HOM05D005954 ORTHO05D007347 9.7e-30 134.0 137 65.0
Migut.H01450 Erythranthe guttata HOM05D005954 ORTHO05D007347 1.3e-29 133.7 157 57.3
Nitab4.5_0004274g0040 Nicotiana tabacum HOM05D005954 ORTHO05D007347 1.3e-29 133.7 141 63.8
Solyc01g056780.3 Solanum lycopersicum HOM05D005954 ORTHO05D007347 1.7e-29 133.3 139 61.9
THA.LOC104820590 Tarenaya hassleriana HOM05D005954 ORTHO05D007347 1.7e-29 133.3 159 59.7
BcaNung06755 Brassica carinata HOM05D005954 ORTHO05D007347 2.8e-29 132.5 156 59.6
CARHR028290 Cardamine hirsuta HOM05D005954 ORTHO05D007347 2.8e-29 132.5 136 66.2
Nitab4.5_0000117g0150 Nicotiana tabacum HOM05D005954 ORTHO05D007347 2.8e-29 132.5 141 63.1
CDE02G3841 Ceratophyllum demersum HOM05D005954 ORTHO05D009675 3.7e-29 132.1 119 68.9
Lsat_1_v5_gn_7_23061 Lactuca sativa HOM05D005954 ORTHO05D007347 3.7e-29 132.1 149 63.1
Medtr2g015790 Medicago truncatula HOM05D005954 ORTHO05D007347 6.3e-29 131.3 155 58.7
Psat1g199440 Pisum sativum HOM05D005954 ORTHO05D007347 6.3e-29 131.3 136 65.4
BolC3t19807H Brassica oleracea HOM05D005954 ORTHO05D007347 8.2e-29 131.0 156 58.3
SalBow8G3893 Salvia bowleyana HOM05D005954 ORTHO05D007347 8.2e-29 131.0 160 60.6
PGSC0003DMG400021493 Solanum tuberosum HOM05D005954 ORTHO05D007347 1.1e-28 130.6 139 62.6
arahy.Tifrunner.gnm1.ann1.69550A Arachis hypogaea HOM05D005954 ORTHO05D007347 1.4e-28 130.2 142 62.0
MBI13_g00561_MAGBIO Magnolia biondii HOM05D005954 ORTHO05D007347 1.4e-28 130.2 160 61.9
BcaC05g26922 Brassica carinata HOM05D005954 ORTHO05D007347 3.1e-28 129.0 159 59.1
C05p27750 Brassica napus HOM05D005954 ORTHO05D007347 3.1e-28 129.0 159 59.1
BolC5t31496H Brassica oleracea HOM05D005954 ORTHO05D007347 3.1e-28 129.0 159 59.1
Cc02_g14660 Coffea canephora HOM05D005954 ORTHO05D007347 5.3e-28 128.3 162 58.0
Sopen01g025250 Solanum pennellii HOM05D005954 ORTHO05D007347 2.6e-27 125.9 142 61.3
ATR0602G014 Amborella trichopoda HOM05D005954 ORTHO05D007347 3.4e-27 125.6 133 61.7
SGA_v2.0_scaffold1G00032 Striga asiatica HOM05D005954 ORTHO05D007347 1.3e-26 123.6 155 58.1
COL.COLO4_31320 Corchorus olitorius HOM05D005954 ORTHO05D007347 1.7e-26 123.2 79 81.0
Lj1P1194T69 Lonicera japonica HOM05D005954 ORTHO05D007347 3.8e-26 122.1 86 77.9
DCAR_007962 Daucus carota HOM05D005954 ORTHO05D007347 5.0e-26 121.7 145 60.0
HanXRQChr04g0116001 Helianthus annuus HOM05D005954 ORTHO05D007347 1.4e-25 120.2 148 60.1
ECA236G0551 Erigeron canadensis HOM05D005954 ORTHO05D007347 5.5e-25 118.2 144 59.7
MD16G1032400 Malus domestica HOM05D005954 ORTHO05D007347 7.9e-24 114.4 159 53.5
Rhsim13G0191500 Rhododendron simsii HOM05D005954 ORTHO05D007347 1.0e-23 114.0 135 59.3
Ca_00467_v3 Cicer arietinum L. HOM05D005954 ORTHO05D007347 1.8e-23 113.2 152 55.9
Ca_30955_v3 Cicer arietinum L. HOM05D005954 ORTHO05D007347 1.8e-23 113.2 152 55.9
unitig_22.g6753 Utricularia gibba HOM05D005954 ORTHO05D007347 1.8e-23 113.2 161 54.0
vmacro01548 Vaccinium macrocarpon HOM05D005954 ORTHO05D007347 2.6e-22 109.4 139 53.2
HPP92_016045 Vanilla planifolia HOM05D005954 ORTHO05D007347 4.4e-22 108.6 89 70.8
BcaC06g35397 Brassica carinata HOM05D005954 ORTHO05D007347 5.7e-22 108.2 135 57.0
Zm00001eb150530 Zea mays HOM05D005954 ORTHO05D007347 5.7e-22 108.2 168 50.6
CAN.G889.12 Capsicum annuum HOM05D005954 ORTHO05D007347 2.2e-21 106.3 150 52.7
Oeu001090.1 Olea europaea HOM05D005954 ORTHO05D007347 2.2e-21 106.3 108 62.0
Os01g0805000 Oryza sativa ssp. japonica HOM05D005954 ORTHO05D007347 2.8e-21 105.9 143 53.8
Sc05g0007180 Simmondsia chinensis HOM05D005954 ORTHO05D007347 1.1e-20 104.0 78 73.1
Lalb_Chr20g0121221 Lupinus albus HOM05D005954 ORTHO05D007347 3.1e-20 102.4 138 55.1
Atru.chr10.1684 Acer truncatum HOM05D005954 ORTHO05D007347 1.5e-19 100.1 80 67.5
MD16G1032600 Malus domestica HOM05D005954 ORTHO05D007347 2.9e-18 95.9 119 53.8
CARHR028330 Cardamine hirsuta HOM05D005954 ORTHO05D007347 3.1e-12 75.9 59 72.9
CBR_g29683 Chara braunii HOM05D005954 ORTHO05D007347 3.1e-12 75.9 105 50.5
Pp3c18_19220 Physcomitrium patens HOM05D005954 ORTHO05D007347 2.6e-11 72.8 139 50.4
SEGI_22528 Sequoiadendron giganteum HOM05D005954 ORTHO05D007347 2.6e-11 72.8 83 60.2
AagrBONN_evm.TU.Sc2ySwM_117.1983 Anthoceros agrestis HOM05D005954 ORTHO05D007347 3.5e-11 72.4 121 47.9
Pp3c21_6450 Physcomitrium patens HOM05D005954 ORTHO05D007347 1.9e-09 66.6 136 45.6
Mapoly0043s0046 Marchantia polymorpha HOM05D005954 ORTHO05D007347 4.2e-09 65.5 116 49.1
FAN25G0298 Fragaria x ananassa HOM05D000253 ORTHO05D000149 3.6e-08 62.4 72 63.9
Nn1g04376 Nelumbo nucifera HOM05D005954 ORTHO05D007347 5.2e-07 58.5 73 58.9
Nn3g19836 Nelumbo nucifera HOM05D005954 ORTHO05D007347 8.8e-07 57.8 46 67.4


User provided reference genes

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