Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G056000 Prunus persica HOM05D007006 ORTHO05D008925 5.5e-107 391.0 194 100.0
MD10G1285600 Malus domestica HOM05D007006 ORTHO05D008925 2.3e-89 332.4 195 85.6
CiPaw.10G055000 Carya illinoinensis HOM05D007006 ORTHO05D008925 3.0e-81 305.4 167 88.0
Haze_06320 Corylus avellana HOM05D007006 ORTHO05D008925 3.7e-79 298.5 168 85.7
RcHm_v2.0_Chr5g0009821 Rosa chinensis HOM05D007006 ORTHO05D008925 4.5e-77 291.6 164 88.4
FAN21G1832 Fragaria x ananassa HOM05D007006 ORTHO05D008925 2.7e-74 282.3 158 89.2
Eucgr.E03165 Eucalyptus grandis HOM05D007006 ORTHO05D008925 3.6e-74 282.0 201 73.1
CsaV3_1G012640 Cucumis sativus L. HOM05D007006 ORTHO05D008925 4.7e-74 281.6 168 80.4
Manes.16G034601 Manihot esculenta HOM05D007006 ORTHO05D008925 6.1e-74 281.2 172 82.0
arahy.Tifrunner.gnm1.ann1.PE4VQR Arachis hypogaea HOM05D000109 ORTHO05D000965 8.0e-74 280.8 172 78.5
Duzib160G0118 Durio zibethinus HOM05D007006 ORTHO05D008925 1.0e-73 280.4 179 77.1
Gohir.A10G029300 Gossypium hirsutum HOM05D007006 ORTHO05D008925 1.0e-73 280.4 164 83.5
Gohir.D10G029800 Gossypium hirsutum HOM05D007006 ORTHO05D008925 2.3e-73 279.3 164 82.9
Gorai.011G031700 Gossypium raimondii HOM05D007006 ORTHO05D008925 2.3e-73 279.3 164 82.9
COL.COLO4_31384 Corchorus olitorius HOM05D007006 ORTHO05D008976 5.2e-73 278.1 163 82.2
Atru.chr10.1745 Acer truncatum HOM05D007006 ORTHO05D008925 6.7e-73 277.7 182 74.7
Potri.011G062200 Populus trichocarpa HOM05D007006 ORTHO05D008925 2.0e-72 276.2 164 82.9
TPR.G31857 Trifolium pratense HOM05D007006 ORTHO05D008925 3.3e-72 275.4 174 77.6
GSVIVG01021151001 Vitis vinifera HOM05D007006 ORTHO05D008925 4.4e-72 275.0 161 82.0
TAR626G0127 Trochodendron aralioides HOM05D007006 ORTHO05D008925 5.7e-72 274.6 163 82.2
THA.LOC104798412 Tarenaya hassleriana HOM05D007006 ORTHO05D008925 7.5e-72 274.2 166 80.1
Lj6g0023400 Lotus japonicus HOM05D007006 ORTHO05D008925 9.7e-72 273.9 162 80.2
TWI63G0680 Tripterygium wilfordii HOM05D007006 ORTHO05D008925 9.7e-72 273.9 184 75.0
Migut.M01077 Erythranthe guttata HOM05D007006 ORTHO05D008925 1.7e-71 273.1 173 79.8
Sabra11G0042600 Salix brachista HOM05D007006 ORTHO05D008925 2.2e-71 272.7 173 80.3
Sabra11G0044100 Salix brachista HOM05D007006 ORTHO05D008925 2.2e-71 272.7 173 80.3
Actinidia07621 Actinidia chinensis HOM05D007006 ORTHO05D008925 2.8e-71 272.3 160 81.9
Phvul.006G179400 Phaseolus vulgaris HOM05D007006 ORTHO05D008925 2.8e-71 272.3 164 79.3
Sed0005765 Sechium edule HOM05D007006 ORTHO05D008925 2.8e-71 272.3 153 85.0
Thecc.06G177200 Theobroma cacao HOM05D007006 ORTHO05D008925 3.7e-71 271.9 168 80.4
CSS0027125 Camellia sinensis var. sinensis HOM05D007006 ORTHO05D008925 1.1e-70 270.4 161 80.7
Dinv17375 Davidia involucrata HOM05D007006 ORTHO05D008925 1.1e-70 270.4 164 81.1
VMungo0540G0068 Vigna mungo HOM05D007006 ORTHO05D008925 1.4e-70 270.0 164 78.7
CANSAT35G1771 Cannabis sativa HOM05D007006 ORTHO05D008925 3.1e-70 268.9 156 81.4
MSTRG.7381 Avicennia marina HOM05D007006 ORTHO05D008925 7.0e-70 267.7 174 75.3
PSO210G2152 Papaver somniferum HOM05D007006 ORTHO05D008925 1.2e-69 266.9 163 79.8
BraA01t00989Z Brassica rapa HOM05D007006 ORTHO05D008925 2.0e-69 266.2 170 75.3
Oeu001091.1 Olea europaea HOM05D007006 ORTHO05D008925 2.0e-69 266.2 174 76.4
Sp7g15560 Schrenkiella parvula HOM05D007006 ORTHO05D008925 2.0e-69 266.2 178 72.5
Nn1g04307 Nelumbo nucifera HOM05D007006 ORTHO05D008925 3.5e-69 265.4 153 83.0
MELO3C002631.2 Cucumis melo HOM05D007006 ORTHO05D008925 5.9e-69 264.6 175 76.0
Aa31LG6G1200 Aethionema arabicum HOM05D007006 ORTHO05D008925 7.7e-69 264.2 183 70.5
Psat1g148320 Pisum sativum HOM05D007006 ORTHO05D008925 7.7e-69 264.2 166 77.7
BcaC09g51505 Brassica carinata HOM05D007006 ORTHO05D008925 1.3e-68 263.5 179 72.6
Carub.0007s2277 Capsella rubella HOM05D007006 ORTHO05D008925 1.7e-68 263.1 186 69.9
ATR0602G073 Amborella trichopoda HOM05D007006 ORTHO05D008925 2.2e-68 262.7 154 82.5
Glyma.15G079600 Glycine max HOM05D007006 ORTHO05D008925 2.2e-68 262.7 152 82.9
BolC1t01215H Brassica oleracea HOM05D007006 ORTHO05D008925 5.0e-68 261.5 171 74.9
Sopen02g022230 Solanum pennellii HOM05D007006 ORTHO05D008925 5.0e-68 261.5 151 82.8
PGSC0003DMG400010717 Solanum tuberosum HOM05D007006 ORTHO05D008925 5.0e-68 261.5 151 82.8
Solyc02g077310.4 Solanum lycopersicum HOM05D007006 ORTHO05D008925 6.5e-68 261.2 151 82.8
Glyma.13G233500 Glycine max HOM05D007006 ORTHO05D008925 8.5e-68 260.8 152 82.2
Hma1.2p1_0155F.1_g068540 Hydrangea macrophylla HOM05D007006 ORTHO05D008925 8.5e-68 260.8 150 84.7
Thhalv10026439m.g Eutrema salsugineum HOM05D007006 ORTHO05D008925 1.1e-67 260.4 161 77.6
HanXRQChr01g0008471 Helianthus annuus HOM05D007006 ORTHO05D008925 1.5e-67 260.0 163 77.3
CARHR225300 Cardamine hirsuta HOM05D007006 ORTHO05D008925 1.9e-67 259.6 168 73.8
Ca_11669_v3 Cicer arietinum L. HOM05D007006 ORTHO05D008925 1.9e-67 259.6 159 79.2
AL7G35820 Arabidopsis lyrata HOM05D007006 ORTHO05D008925 2.5e-67 259.2 161 77.0
Rhsim02G0152900 Rhododendron simsii HOM05D007006 ORTHO05D008925 2.5e-67 259.2 175 74.9
AT4G18460 Arabidopsis thaliana HOM05D007006 ORTHO05D008925 3.2e-67 258.8 153 81.0
BcaNung05874 Brassica carinata HOM05D007006 ORTHO05D008925 9.4e-67 257.3 178 70.8
Nitab4.5_0000376g0100 Nicotiana tabacum HOM05D007006 ORTHO05D008925 9.4e-67 257.3 151 80.1
FvH4_3g08260 Fragaria vesca HOM05D007006 ORTHO05D008925 4.7e-66 255.0 140 89.3
FAN11G3635 Fragaria x ananassa HOM05D007006 ORTHO05D008925 1.4e-65 253.4 138 89.9
FAN16G3644 Fragaria x ananassa HOM05D007006 ORTHO05D008925 1.4e-65 253.4 138 89.9
Os01g0242500 Oryza sativa ssp. japonica HOM05D007006 ORTHO05D008925 1.4e-65 253.4 153 78.4
SalBow8G1160 Salvia bowleyana HOM05D007006 ORTHO05D008925 2.3e-65 252.7 179 69.8
ECA248G3223 Erigeron canadensis HOM05D007006 ORTHO05D008925 4.0e-65 251.9 160 77.5
Nitab4.5_0011727g0040 Nicotiana tabacum HOM05D007006 ORTHO05D008925 4.0e-65 251.9 159 77.4
Zm00001eb122370 Zea mays HOM05D007006 ORTHO05D008925 5.2e-65 251.5 150 80.7
CDE02G4743 Ceratophyllum demersum HOM05D007006 ORTHO05D008925 8.8e-65 250.8 158 76.6
CAN.G79.66 Capsicum annuum HOM05D007006 ORTHO05D008925 5.7e-64 248.1 151 76.2
Sc05g0007280 Simmondsia chinensis HOM05D007006 ORTHO05D008925 5.7e-64 248.1 163 74.2
Medtr2g036040 Medicago truncatula HOM05D007006 ORTHO05D008925 7.5e-64 247.7 177 71.2
SEGI_08558 Sequoiadendron giganteum HOM05D007006 ORTHO05D008925 4.8e-63 245.0 148 79.1
HPP92_002943 Vanilla planifolia HOM05D007006 ORTHO05D008925 2.0e-61 239.6 154 76.6
ClCG03G007950 Citrullus lanatus HOM05D007006 ORTHO05D008925 4.5e-61 238.4 240 55.0
SGA_v2.0_scaffold309G48130 Striga asiatica HOM05D007006 ORTHO05D008925 8.5e-60 234.2 164 72.6
Cc02_g14310 Coffea canephora HOM05D007006 ORTHO05D008925 5.5e-59 231.5 138 78.3
Eucgr.E02654 Eucalyptus grandis HOM05D007006 ORTHO05D008925 1.2e-58 230.3 127 86.6
Lj1A1197T80 Lonicera japonica HOM05D007006 ORTHO05D008925 2.1e-58 229.6 158 72.8
A01p10430 Brassica napus HOM05D007006 ORTHO05D008925 4.7e-58 228.4 171 67.3
SGA_v2.0_scaffold309G48148 Striga asiatica HOM05D007006 ORTHO05D008925 6.1e-58 228.0 186 65.6
SMO356G0615 Selaginella moellendorffii HOM05D007006 ORTHO05D008925 4.0e-57 225.3 156 66.0
Ciclev10016962m.g Citrus clementina HOM05D007006 ORTHO05D008925 3.4e-56 222.2 124 83.9
C01p12410 Brassica napus HOM05D007006 ORTHO05D008925 4.4e-56 221.9 172 65.7
Cpa.g.sc7.31 Carica papaya HOM05D007006 ORTHO05D008925 9.8e-56 220.7 132 80.3
Mapoly0096s0066 Marchantia polymorpha HOM05D007006 ORTHO05D008925 1.3e-55 220.3 149 69.8
Hund21193 Selenicereus undatus HOM05D007006 ORTHO05D008925 1.3e-55 220.3 159 69.2
Pp3c2_4790 Physcomitrium patens HOM05D007006 ORTHO05D008925 1.7e-55 219.9 153 69.3
CBR_g12914 Chara braunii HOM05D007006 ORTHO05D008925 2.8e-55 219.2 160 65.6
Hma1.2p1_0155F.1_g068550 Hydrangea macrophylla HOM05D007006 ORTHO05D008925 4.9e-55 218.4 162 71.6
Cfa000555 Carpinus fangiana HOM05D007006 ORTHO05D008925 4.5e-53 211.8 183 64.5
CBR_g28086 Chara braunii HOM05D007006 ORTHO05D008925 2.3e-52 209.5 160 62.5
AUR62031124 Chenopodium quinoa HOM05D007006 ORTHO05D008925 3.9e-44 182.2 170 57.1
EL10Ac8g20473 Beta vulgaris HOM05D007006 ORTHO05D008925 6.6e-44 181.4 172 57.6
Lsat_1_v5_gn_1_120360 Lactuca sativa HOM05D007006 ORTHO05D008925 9.5e-43 177.6 136 63.2
RcHm_v2.0_Chr5g0007981 Rosa chinensis HOM05D007006 ORTHO05D008925 2.8e-42 176.0 124 73.4
DCAR_004029 Daucus carota HOM05D007006 ORTHO05D008925 2.0e-40 169.9 106 72.6
AUR62014917 Chenopodium quinoa HOM05D007006 ORTHO05D008925 1.7e-39 166.8 148 58.8
Cre12.g542000 Chlamydomonas reinhardtii HOM05D007006 ORTHO05D008925 2.4e-38 162.9 152 53.9
Peaxi162Scf00875g00318 Petunia axillaris HOM05D007006 ORTHO05D008925 2.4e-38 162.9 115 65.2
MCO06G160 Micromonas commoda HOM05D007006 ORTHO05D008925 2.3e-36 156.4 166 50.6
PSO832G1055 Papaver somniferum HOM05D007006 ORTHO05D008925 4.3e-35 152.1 163 54.0
MBI06_g25712_MAGBIO Magnolia biondii HOM05D007006 ORTHO05D008925 6.2e-34 148.3 98 72.4
PGR042G2307 Punica granatum HOM05D007006 ORTHO05D008925 8.1e-34 147.9 98 72.4
Haze_27122 Corylus avellana HOM05D007006 ORTHO05D008925 2.2e-31 139.8 161 42.9
Lalb_Chr20g0121401 Lupinus albus HOM05D007006 ORTHO05D008925 6.4e-31 138.3 79 74.7
PRCOL_00003508 Prasinoderma coloniale HOM05D007006 ORTHO05D008925 2.1e-29 133.3 151 47.7
CBR_g41520 Chara braunii HOM05D000019 ORTHO05D000002 1.1e-19 100.9 73 63.0
SGA_v2.0_scaffold309G48132 Striga asiatica HOM05D007006 ORTHO05D008925 1.8e-17 93.6 131 43.5
Actinidia39491 Actinidia chinensis HOM05D007006 ORTHO05D008925 2.6e-16 89.7 79 63.3
MBI06_g25714_MAGBIO Magnolia biondii HOM05D007006 ORTHO05D008925 3.6e-10 69.3 42 81.0


User provided reference genes

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