Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G052300 Prunus persica HOM05D007882 ORTHO05D009870 5.3e-86 320.9 149 100.0
MD10G1289500 Malus domestica HOM05D007882 ORTHO05D009870 1.9e-67 259.2 146 78.8
TWI38G0780 Tripterygium wilfordii HOM05D007882 ORTHO05D009870 5.5e-67 257.7 150 76.7
Manes.17G049100 Manihot esculenta HOM05D007882 ORTHO05D009870 1.2e-66 256.5 149 77.2
Haze_06385 Corylus avellana HOM05D007882 ORTHO05D009870 6.1e-66 254.2 148 75.7
Potri.004G048400 Populus trichocarpa HOM05D007882 ORTHO05D009870 2.3e-65 252.3 149 77.9
QL05p042203 Quercus lobata HOM05D007882 ORTHO05D009870 2.3e-65 252.3 151 76.2
CSS0041544 Camellia sinensis var. sinensis HOM05D007882 ORTHO05D009870 3.0e-65 251.9 149 75.2
Cc02_g13810 Coffea canephora HOM05D007882 ORTHO05D009870 3.0e-65 251.9 147 72.8
Manes.16G031800 Manihot esculenta HOM05D007882 ORTHO05D009870 3.0e-65 251.9 149 76.5
Sabra04G0030400 Salix brachista HOM05D007882 ORTHO05D009870 4.0e-65 251.5 149 77.9
FvH4_3g08670 Fragaria vesca HOM05D007882 ORTHO05D009870 6.8e-65 250.8 146 77.4
COL.COLO4_31420 Corchorus olitorius HOM05D007882 ORTHO05D009870 1.2e-64 250.0 150 76.0
Cfa000524 Carpinus fangiana HOM05D007882 ORTHO05D009870 2.6e-64 248.8 148 75.0
CiPaw.10G052500 Carya illinoinensis HOM05D007882 ORTHO05D009870 2.6e-64 248.8 148 75.7
FAN16G0532 Fragaria x ananassa HOM05D007882 ORTHO05D009870 2.6e-64 248.8 146 77.4
FAN21G3311 Fragaria x ananassa HOM05D001455 ORTHO05D001587 2.6e-64 248.8 146 76.7
FAN11G2645 Fragaria x ananassa HOM05D007882 ORTHO05D009870 5.7e-64 247.7 146 76.0
RcHm_v2.0_Chr5g0009121 Rosa chinensis HOM05D007882 ORTHO05D009870 5.7e-64 247.7 146 76.7
Atru.chr10.1801 Acer truncatum HOM05D007882 ORTHO05D009870 7.5e-64 247.3 150 76.0
Ciclev10017073m.g Citrus clementina HOM05D007882 ORTHO05D009870 6.3e-63 244.2 147 74.8
Duzib235G1325 Durio zibethinus HOM05D007882 ORTHO05D009870 6.3e-63 244.2 150 74.0
Gohir.A05G159200 Gossypium hirsutum HOM05D007882 ORTHO05D009870 3.5e-61 238.4 150 70.7
Gorai.009G166900 Gossypium raimondii HOM05D007882 ORTHO05D009870 3.5e-61 238.4 150 70.7
CANSAT35G1953 Cannabis sativa HOM05D007882 ORTHO05D009870 4.5e-61 238.0 149 73.2
Nn1g06425 Nelumbo nucifera HOM05D007882 ORTHO05D009870 5.9e-61 237.7 152 69.7
Nitab4.5_0004359g0010 Nicotiana tabacum HOM05D007882 ORTHO05D009870 1.0e-60 236.9 150 70.0
Thecc.06G181400 Theobroma cacao HOM05D007882 ORTHO05D009870 2.9e-60 235.3 150 70.7
ClCG00G004760 Citrullus lanatus HOM05D007882 ORTHO05D009870 5.6e-59 231.1 150 68.0
ClCG01G023240 Citrullus lanatus HOM05D007882 ORTHO05D009870 5.6e-59 231.1 150 68.0
MELO3C007262.2 Cucumis melo HOM05D007882 ORTHO05D009870 9.5e-59 230.3 150 68.0
TAR627G1093 Trochodendron aralioides HOM05D007882 ORTHO05D009870 2.8e-58 228.8 147 69.4
CAN.G529.52 Capsicum annuum HOM05D007882 ORTHO05D009870 4.7e-58 228.0 150 65.3
Oeu012151.1 Olea europaea HOM05D007882 ORTHO05D009870 1.0e-57 226.9 148 66.2
Gohir.D05G161900 Gossypium hirsutum HOM05D007882 ORTHO05D009870 2.3e-57 225.7 144 70.1
Rhsim02G0134400 Rhododendron simsii HOM05D007882 ORTHO05D009870 4.0e-57 224.9 146 68.5
Aqoxy4G00631 Aquilegia oxysepala HOM05D007882 ORTHO05D009870 1.5e-56 223.0 149 67.1
Psat1g202760 Pisum sativum HOM05D007882 ORTHO05D009870 2.6e-56 222.2 147 66.0
TPR.G789 Trifolium pratense HOM05D007882 ORTHO05D009870 4.4e-56 221.5 147 66.7
Medtr2g014430 Medicago truncatula HOM05D007882 ORTHO05D009870 7.5e-56 220.7 147 67.3
Migut.M01110 Erythranthe guttata HOM05D007882 ORTHO05D009870 1.3e-55 219.9 149 65.1
PGR004G2459 Punica granatum HOM05D007882 ORTHO05D009870 6.4e-55 217.6 148 64.9
SalBow8G2967 Salvia bowleyana HOM05D007882 ORTHO05D009870 6.4e-55 217.6 148 64.9
SalBow8G3626 Salvia bowleyana HOM05D007882 ORTHO05D009870 6.4e-55 217.6 148 64.9
arahy.Tifrunner.gnm1.ann1.CPZJ30 Arachis hypogaea HOM05D007882 ORTHO05D009870 9.2e-54 213.8 146 67.1
Sed0022369 Sechium edule HOM05D007882 ORTHO05D009870 9.2e-54 213.8 150 65.3
Eucgr.D00598 Eucalyptus grandis HOM05D007882 ORTHO05D009870 2.0e-53 212.6 148 63.5
PSO210G1466 Papaver somniferum HOM05D007882 ORTHO05D009870 2.0e-53 212.6 152 66.4
Lj6g0021640 Lotus japonicus HOM05D007882 ORTHO05D009870 3.5e-53 211.8 147 64.6
Lalb_Chr18g0059401 Lupinus albus HOM05D007882 ORTHO05D009870 3.5e-53 211.8 148 64.9
PSO210G4689 Papaver somniferum HOM05D007882 ORTHO05D009870 3.5e-53 211.8 152 65.1
PGSC0003DMG400031764 Solanum tuberosum HOM05D007882 ORTHO05D009870 6.0e-53 211.1 148 62.2
Solyc02g077700.1 Solanum lycopersicum HOM05D007882 ORTHO05D009870 1.3e-52 209.9 148 61.5
Aa31LG9G13760 Aethionema arabicum HOM05D007882 ORTHO05D009870 1.5e-51 206.5 146 62.3
C04p63420 Brassica napus HOM05D007882 ORTHO05D009870 1.5e-51 206.5 147 63.3
BolC4t27817H Brassica oleracea HOM05D007882 ORTHO05D009870 1.5e-51 206.5 147 63.3
Dinv40598 Davidia involucrata HOM05D007882 ORTHO05D009870 1.5e-51 206.5 137 69.3
Sp4g16270 Schrenkiella parvula HOM05D007882 ORTHO05D009870 4.3e-51 204.9 147 63.3
A04p26080 Brassica napus HOM05D007882 ORTHO05D009870 5.6e-51 204.5 147 62.6
BraA04t18110Z Brassica rapa HOM05D007882 ORTHO05D009870 5.6e-51 204.5 147 62.6
SGA_v2.0_scaffold22G09668 Striga asiatica HOM05D007882 ORTHO05D009870 5.6e-51 204.5 147 59.9
Glyma.13G235900 Glycine max HOM05D007882 ORTHO05D009870 7.3e-51 204.1 146 66.4
THA.LOC104820567 Tarenaya hassleriana HOM05D007882 ORTHO05D009870 1.2e-50 203.4 146 65.8
HanXRQChr01g0014401 Helianthus annuus HOM05D007882 ORTHO05D009870 3.6e-50 201.8 148 62.2
AL4G29660 Arabidopsis lyrata HOM05D007882 ORTHO05D009870 8.9e-49 197.2 147 60.5
CARHR128020 Cardamine hirsuta HOM05D007882 ORTHO05D009870 1.5e-48 196.4 147 60.5
Thhalv10017644m.g Eutrema salsugineum HOM05D007882 ORTHO05D009870 2.0e-48 196.1 147 59.9
unitig_22.g6219 Utricularia gibba HOM05D007882 ORTHO05D009870 2.0e-48 196.1 145 61.4
CsaV3_6G050400 Cucumis sativus L. HOM05D007882 ORTHO05D009870 2.6e-48 195.7 127 69.3
DCAR_028056 Daucus carota HOM05D007882 ORTHO05D009870 3.4e-48 195.3 148 60.8
Phvul.006G182500 Phaseolus vulgaris HOM05D007882 ORTHO05D009870 3.4e-48 195.3 147 63.3
Nitab4.5_0001955g0180 Nicotiana tabacum HOM05D007882 ORTHO05D009870 1.7e-47 193.0 112 75.0
AT2G33855 Arabidopsis thaliana HOM05D007882 ORTHO05D009870 8.3e-47 190.7 147 59.9
Carub.0004s1556 Capsella rubella HOM05D007882 ORTHO05D009870 1.1e-46 190.3 147 59.2
Ah.14g089690 Amaranthus hybridus HOM05D007882 ORTHO05D009870 2.8e-42 175.6 117 68.4
MBI04_g06226_MAGBIO Magnolia biondii HOM05D007882 ORTHO05D009870 1.4e-41 173.3 155 52.9
Lsat_1_v5_gn_4_51820 Lactuca sativa HOM05D000216 ORTHO05D009870 2.0e-40 169.5 130 60.8
ATR0789G148 Amborella trichopoda HOM05D007882 ORTHO05D009870 9.9e-40 167.2 148 52.0
Nn1g04229 Nelumbo nucifera HOM05D007882 ORTHO05D009870 2.2e-31 139.4 100 65.0
HPP92_022798 Vanilla planifolia HOM05D007882 ORTHO05D009870 6.4e-31 137.9 142 44.4
QL06p028733 Quercus lobata HOM05D007882 ORTHO05D009870 5.6e-27 124.8 96 64.6
Os04g0475300 Oryza sativa ssp. japonica HOM05D007882 ORTHO05D009870 1.7e-20 103.2 154 37.0
Zm00001eb079820 Zea mays HOM05D007882 ORTHO05D009870 9.6e-19 97.4 145 37.2
Cpa.g.sc27.7 Carica papaya HOM05D007882 ORTHO05D009870 9.9e-16 87.4 54 72.2
Sc17g0005950 Simmondsia chinensis HOM05D007447 ORTHO05D009372 2.2e-15 86.3 60 61.7
BcaC02g07777 Brassica carinata HOM05D007882 ORTHO05D009870 2.7e-13 79.3 56 55.4
Pp3c24_16730 Physcomitrium patens HOM05D031660 ORTHO05D009870 1.5e-08 63.5 85 42.4


User provided reference genes

Program Settings