Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G052200 Prunus persica HOM05D007160 ORTHO05D005331 4.9e-112 408.3 287 100.0
Prupe.4G052000 Prunus persica HOM05D007160 ORTHO05D005331 6.5e-48 195.3 248 63.3
MD05G1310400 Malus domestica HOM05D007160 ORTHO05D005331 2.9e-40 169.9 335 46.9
MD10G1289700 Malus domestica HOM05D007160 ORTHO05D005331 2.4e-34 150.2 310 51.6
Duzib192G1060 Durio zibethinus HOM05D007160 ORTHO05D005331 5.9e-25 119.0 313 36.1
Duzib160G0215 Durio zibethinus HOM05D007160 ORTHO05D005331 4.7e-22 109.4 293 37.5
Cfa000523 Carpinus fangiana HOM05D007160 ORTHO05D005331 1.3e-19 101.3 282 41.1
CiPaw.10G052400 Carya illinoinensis HOM05D007160 ORTHO05D005331 2.8e-19 100.1 264 46.2
Ca_18588_v3 Cicer arietinum L. HOM05D007160 ORTHO05D005331 3.7e-19 99.8 273 40.3
Haze_06386 Corylus avellana HOM05D007160 ORTHO05D005331 1.8e-18 97.4 324 40.1
Lj4g0028244 Lotus japonicus HOM05D007160 ORTHO05D005331 2.4e-18 97.1 95 58.9
Phvul.006G182700 Phaseolus vulgaris HOM05D007160 ORTHO05D005331 1.2e-17 94.7 304 35.9
Medtr4g088385 Medicago truncatula HOM05D007160 ORTHO05D005331 3.5e-17 93.2 395 31.6
CiPaw.09G063200 Carya illinoinensis HOM05D007160 ORTHO05D005331 5.9e-17 92.4 285 40.7
Gorai.009G167000 Gossypium raimondii HOM05D007160 ORTHO05D005331 7.8e-17 92.0 298 33.9
VMungo0540G2483 Vigna mungo HOM05D007160 ORTHO05D005331 1.0e-16 91.7 297 34.0
Gohir.D10G028200 Gossypium hirsutum HOM05D007160 ORTHO05D005331 1.3e-16 91.3 321 34.0
QL05p042103 Quercus lobata HOM05D007160 ORTHO05D005331 2.3e-16 90.5 88 61.4
QL05p042154 Quercus lobata HOM05D007160 ORTHO05D005331 2.3e-16 90.5 88 61.4
Gohir.D05G162000 Gossypium hirsutum HOM05D007160 ORTHO05D005331 2.9e-16 90.1 302 33.1
Potri.004G048301 Populus trichocarpa HOM05D007160 ORTHO05D005331 2.9e-16 90.1 261 43.3
Ca_00358_v3 Cicer arietinum L. HOM05D007160 ORTHO05D005331 3.9e-16 89.7 328 33.2
Ca_30973_v3 Cicer arietinum L. HOM05D007160 ORTHO05D005331 3.9e-16 89.7 328 33.2
Glyma.13G236100 Glycine max HOM05D007160 ORTHO05D005331 3.9e-16 89.7 290 40.3
FAN11G0877 Fragaria x ananassa HOM05D007160 ORTHO05D005331 5.0e-16 89.4 90 62.2
Lalb_Chr20g0121591 Lupinus albus HOM05D007160 ORTHO05D005331 5.0e-16 89.4 303 31.7
Actinidia16571 Actinidia chinensis HOM05D007160 ORTHO05D005331 4.3e-15 86.3 88 59.1
Dinv17351 Davidia involucrata HOM05D007160 ORTHO05D005331 7.3e-15 85.5 171 39.8
TAR627G1090 Trochodendron aralioides HOM05D018497 ORTHO05D005331 9.5e-15 85.1 101 52.5
Glyma.15G077600 Glycine max HOM05D007160 ORTHO05D005331 1.6e-14 84.3 324 32.4
Duzib235G1074 Durio zibethinus HOM05D007160 ORTHO05D005331 3.6e-14 83.2 332 35.2
Lj6g0014856 Lotus japonicus HOM05D007160 ORTHO05D005331 1.8e-13 80.9 297 38.4
Oeu014779.1 Olea europaea HOM05D007160 ORTHO05D005331 2.3e-13 80.5 299 33.8
Sabra11G0039600 Salix brachista HOM05D007160 ORTHO05D005331 6.8e-13 79.0 312 37.2
Nitab4.5_0000516g0060 Nicotiana tabacum HOM05D007160 ORTHO05D005331 1.2e-12 78.2 91 52.7
Nitab4.5_0001375g0150 Nicotiana tabacum HOM05D007160 ORTHO05D005331 2.0e-12 77.4 91 51.6
Sed0007130 Sechium edule HOM05D007160 ORTHO05D005331 2.0e-12 77.4 297 29.0
DCAR_004048 Daucus carota HOM05D007160 ORTHO05D005331 4.4e-12 76.3 98 54.1
FAN21G2372 Fragaria x ananassa HOM05D007160 ORTHO05D005331 4.4e-12 76.3 309 41.1
VMungo0251G1795 Vigna mungo HOM05D007160 ORTHO05D005331 7.5e-12 75.5 383 28.5
Dinv40598 Davidia involucrata HOM05D007882 ORTHO05D009870 9.8e-12 75.1 278 50.0
Glyma.07G201100 Glycine max HOM05D007160 ORTHO05D005331 9.8e-12 75.1 380 34.7
Cc02_g13790 Coffea canephora HOM05D007160 ORTHO05D005331 1.7e-11 74.3 91 52.7
Gohir.A10G027800 Gossypium hirsutum HOM05D007160 ORTHO05D005331 1.7e-11 74.3 315 37.8
Thecc.06G181500 Theobroma cacao HOM05D007160 ORTHO05D005331 1.7e-11 74.3 106 50.9
FvH4_3g08671 Fragaria vesca HOM05D007160 ORTHO05D005331 3.7e-11 73.2 320 42.5
Glyma.13G175300 Glycine max HOM05D007160 ORTHO05D005331 3.7e-11 73.2 377 36.6
Nitab4.5_0000516g0090 Nicotiana tabacum HOM05D007160 ORTHO05D005331 6.4e-11 72.4 91 50.5
Gorai.011G030000 Gossypium raimondii HOM05D007160 ORTHO05D005331 8.3e-11 72.0 322 36.3
Nitab4.5_0000516g0070 Nicotiana tabacum HOM05D007160 ORTHO05D005331 8.3e-11 72.0 91 49.5
FAN16G2322 Fragaria x ananassa HOM05D007160 ORTHO05D005331 1.1e-10 71.6 321 44.2
CANSAT35G1941 Cannabis sativa HOM05D007160 ORTHO05D005331 1.4e-10 71.2 326 35.9
Nitab4.5_0001375g0140 Nicotiana tabacum HOM05D007160 ORTHO05D005331 1.4e-10 71.2 89 51.7
PGR042G2677 Punica granatum HOM05D007160 ORTHO05D005331 1.4e-10 71.2 313 33.5
EL10Ac8g20435 Beta vulgaris HOM05D007160 ORTHO05D005331 1.9e-10 70.9 100 48.0
Medtr2g014400 Medicago truncatula HOM05D007160 ORTHO05D005331 2.4e-10 70.5 260 35.4
Sabra04G0030300 Salix brachista HOM05D007160 ORTHO05D005331 3.2e-10 70.1 324 39.8
TPR.G19911 Trifolium pratense HOM05D007160 ORTHO05D005331 3.2e-10 70.1 355 27.6
Ciclev10016200m.g Citrus clementina HOM05D007160 ORTHO05D005331 4.1e-10 69.7 313 37.4
Nitab4.5_0001375g0120 Nicotiana tabacum HOM05D007160 ORTHO05D005331 5.4e-10 69.3 91 48.4
Potri.011G057500 Populus trichocarpa HOM05D007160 ORTHO05D005331 5.4e-10 69.3 315 32.4
PGSC0003DMG400022807 Solanum tuberosum HOM05D007160 ORTHO05D005331 9.2e-10 68.6 82 50.0
Peaxi162Scf01018g00012 Petunia axillaris HOM05D007160 ORTHO05D005331 1.6e-09 67.8 311 34.7
Rhsim02G0134300 Rhododendron simsii HOM05D007160 ORTHO05D005331 2.0e-09 67.4 354 33.3
Psat1g203080 Pisum sativum HOM05D007160 ORTHO05D005331 2.7e-09 67.0 279 30.5
DCAR_008006 Daucus carota HOM05D007160 ORTHO05D005331 6.0e-09 65.9 294 34.0
Gohir.A05G159300 Gossypium hirsutum HOM05D007160 ORTHO05D005331 6.0e-09 65.9 87 52.9
CAN.G529.50 Capsicum annuum HOM05D007160 ORTHO05D005331 2.3e-08 63.9 94 48.9
ClCG01G023230 Citrullus lanatus HOM05D007160 ORTHO05D005331 2.3e-08 63.9 336 32.1
Hma1.2p1_0558F.1_g178530 Hydrangea macrophylla HOM05D007160 ORTHO05D005331 2.3e-08 63.9 324 36.4
Phvul.002G232100 Phaseolus vulgaris HOM05D007160 ORTHO05D005331 2.3e-08 63.9 380 35.5
TAR624G0339 Trochodendron aralioides HOM05D007160 ORTHO05D005331 2.3e-08 63.9 97 46.4
Lsat_1_v5_gn_7_22701 Lactuca sativa HOM05D007160 ORTHO05D005331 3.9e-08 63.2 77 45.5
Solyc02g077710.1 Solanum lycopersicum HOM05D007160 ORTHO05D005331 8.6e-08 62.0 91 47.3
Lalb_Chr09g0327841 Lupinus albus HOM05D007160 ORTHO05D005331 1.5e-07 61.2 85 48.2
SalBow8G4606 Salvia bowleyana HOM05D007160 ORTHO05D005331 1.5e-07 61.2 87 46.0
PGSC0003DMG400031775 Solanum tuberosum HOM05D007160 ORTHO05D005331 1.5e-07 61.2 85 49.4
TWI63G1823 Tripterygium wilfordii HOM05D007160 ORTHO05D005331 1.9e-07 60.8 314 42.7
Sopen02g022600 Solanum pennellii HOM05D007160 ORTHO05D005331 3.3e-07 60.1 91 46.2
Nitab4.5_0004359g0050 Nicotiana tabacum HOM05D007160 ORTHO05D005331 7.3e-07 58.9 94 45.7
Sed0008189 Sechium edule HOM05D007160 ORTHO05D005331 1.2e-06 58.2 294 37.8
Nitab4.5_0003341g0030 Nicotiana tabacum HOM05D007160 ORTHO05D005331 2.8e-06 57.0 80 51.2
Nitab4.5_0006098g0020 Nicotiana tabacum HOM05D007160 ORTHO05D005331 2.8e-06 57.0 70 52.9
Rhsim13G0180200 Rhododendron simsii HOM05D007160 ORTHO05D005331 2.8e-06 57.0 134 38.8
MSTRG.13207 Avicennia marina HOM05D007160 ORTHO05D005331 6.2e-06 55.8 287 26.8
Peaxi162Scf00926g00031 Petunia axillaris HOM05D007160 ORTHO05D005331 6.2e-06 55.8 90 46.7
THA.LOC104820566 Tarenaya hassleriana HOM05D009159 ORTHO05D005331 8.0e-06 55.5 65 47.7


User provided reference genes

Program Settings