Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G051900 Prunus persica HOM05D007507 ORTHO05D009420 8.7e-76 287.0 152 100.0
MD10G1289800 Malus domestica HOM05D007507 ORTHO05D009420 1.8e-57 226.1 148 79.1
MD05G1310700 Malus domestica HOM05D007507 ORTHO05D009420 3.4e-56 221.9 152 77.0
RcHm_v2.0_Chr5g0009091 Rosa chinensis HOM05D007507 ORTHO05D009420 5.7e-51 204.5 152 71.1
FAN21G1585 Fragaria x ananassa HOM05D007507 ORTHO05D009420 2.2e-50 202.6 152 71.7
FvH4_3g08680 Fragaria vesca HOM05D007507 ORTHO05D009420 1.8e-49 199.5 152 70.4
FAN11G0818 Fragaria x ananassa HOM05D007507 ORTHO05D009420 2.0e-48 196.1 153 70.6
Thecc.06G181600 Theobroma cacao HOM05D007507 ORTHO05D009420 8.5e-39 164.1 136 63.2
GSVIVG01021107001 Vitis vinifera HOM05D007507 ORTHO05D009420 1.9e-38 162.9 136 62.5
QL05p042078 Quercus lobata HOM05D007507 ORTHO05D009420 3.2e-38 162.2 129 66.7
Duzib235G0685 Durio zibethinus HOM05D007507 ORTHO05D009420 4.2e-38 161.8 136 61.8
Lalb_Chr20g0121601 Lupinus albus HOM05D007507 ORTHO05D009420 5.5e-38 161.4 134 61.2
Glyma.15G077500 Glycine max HOM05D007507 ORTHO05D009420 8.0e-37 157.5 124 65.3
CiPaw.10G052300 Carya illinoinensis HOM05D007507 ORTHO05D009420 1.0e-36 157.1 135 63.0
Phvul.002G232000 Phaseolus vulgaris HOM05D007507 ORTHO05D009420 5.2e-36 154.8 129 63.6
TAR626G1744 Trochodendron aralioides HOM05D007507 ORTHO05D009420 2.0e-35 152.9 127 62.2
Glyma.07G201000 Glycine max HOM05D007507 ORTHO05D009420 2.6e-35 152.5 136 57.4
Glyma.13G175400 Glycine max HOM05D007507 ORTHO05D009420 2.6e-35 152.5 136 58.1
CSS0001598 Camellia sinensis var. sinensis HOM05D007507 ORTHO05D009420 2.2e-34 149.4 134 56.7
VMungo0251G0526 Vigna mungo HOM05D007507 ORTHO05D009420 2.8e-34 149.1 131 59.5
Glyma.13G236200 Glycine max HOM05D007507 ORTHO05D009420 6.3e-34 147.9 125 62.4
CANSAT35G2017 Cannabis sativa HOM05D007507 ORTHO05D009420 1.1e-33 147.1 131 59.5
Duzib192G0611 Durio zibethinus HOM05D007507 ORTHO05D009420 7.0e-33 144.4 136 58.8
Phvul.006G182800 Phaseolus vulgaris HOM05D007507 ORTHO05D009420 1.2e-32 143.7 124 61.3
TPR.G39426 Trifolium pratense HOM05D007507 ORTHO05D009420 1.6e-32 143.3 138 57.2
Dinv17350 Davidia involucrata HOM05D007507 ORTHO05D009420 3.5e-32 142.1 136 55.1
Ciclev10016932m.g Citrus clementina HOM05D007507 ORTHO05D009420 1.0e-31 140.6 143 57.3
Medtr2g014380 Medicago truncatula HOM05D007507 ORTHO05D009420 1.0e-31 140.6 134 56.0
Cpa.g.sc27.9 Carica papaya HOM05D007507 ORTHO05D009420 1.3e-31 140.2 142 54.2
Nn1g04226 Nelumbo nucifera HOM05D007507 ORTHO05D009420 1.7e-31 139.8 129 57.4
Actinidia16570 Actinidia chinensis HOM05D007507 ORTHO05D009420 5.0e-31 138.3 136 53.7
Dinv40597 Davidia involucrata HOM05D007507 ORTHO05D009420 3.2e-30 135.6 141 56.0
Lj4g0010126 Lotus japonicus HOM05D007507 ORTHO05D009420 4.2e-30 135.2 137 55.5
Psat7g115600 Pisum sativum HOM05D007507 ORTHO05D009420 4.2e-30 135.2 139 55.4
Gohir.A05G159400 Gossypium hirsutum HOM05D007507 ORTHO05D009420 5.5e-30 134.8 136 54.4
Gohir.D09G073200 Gossypium hirsutum HOM05D007507 ORTHO05D009420 5.5e-30 134.8 142 57.0
Gorai.006G088200 Gossypium raimondii HOM05D007507 ORTHO05D009420 5.5e-30 134.8 142 57.0
Medtr4g088390 Medicago truncatula HOM05D007507 ORTHO05D009420 9.4e-30 134.0 136 54.4
Potri.011G057400 Populus trichocarpa HOM05D007507 ORTHO05D009420 1.6e-29 133.3 137 54.7
Gohir.A09G073500 Gossypium hirsutum HOM05D007507 ORTHO05D009420 3.6e-29 132.1 142 56.3
Actinidia05654 Actinidia chinensis HOM05D007507 ORTHO05D009420 1.0e-28 130.6 135 51.9
PGR042G2392 Punica granatum HOM05D007507 ORTHO05D009420 1.4e-28 130.2 134 56.0
TPR.G19926 Trifolium pratense HOM05D007507 ORTHO05D009420 1.4e-28 130.2 137 55.5
Gohir.D05G162100 Gossypium hirsutum HOM05D007507 ORTHO05D009420 1.8e-28 129.8 136 53.7
Gorai.009G167100 Gossypium raimondii HOM05D007507 ORTHO05D009420 3.0e-28 129.0 135 52.6
Sabra11G0039300 Salix brachista HOM05D007507 ORTHO05D009420 8.8e-28 127.5 137 53.3
arahy.Tifrunner.gnm1.ann1.IERL18 Arachis hypogaea HOM05D007507 ORTHO05D009420 1.2e-27 127.1 136 54.4
arahy.Tifrunner.gnm1.ann1.UCBT0G Arachis hypogaea HOM05D007507 ORTHO05D009420 1.2e-27 127.1 136 53.7
Manes.16G031300 Manihot esculenta HOM05D007507 ORTHO05D009420 2.0e-27 126.3 137 51.1
Eucgr.E03247 Eucalyptus grandis HOM05D007507 ORTHO05D009420 3.4e-27 125.6 139 51.1
Potri.004G048201 Populus trichocarpa HOM05D007507 ORTHO05D009420 9.8e-27 124.0 137 52.6
arahy.Tifrunner.gnm1.ann1.26E61A Arachis hypogaea HOM05D007507 ORTHO05D009420 1.3e-26 123.6 136 53.7
arahy.Tifrunner.gnm1.ann1.XNU6AG Arachis hypogaea HOM05D007507 ORTHO05D009420 1.7e-26 123.2 136 53.7
PGSC0003DMG400031763 Solanum tuberosum HOM05D007507 ORTHO05D009420 2.2e-26 122.9 139 48.2
Atru.chr10.1803 Acer truncatum HOM05D007507 ORTHO05D009420 2.8e-26 122.5 149 52.3
Atru.chr10.1804 Acer truncatum HOM05D007507 ORTHO05D009420 3.7e-26 122.1 145 53.8
TWI38G1903 Tripterygium wilfordii HOM05D007507 ORTHO05D009420 1.4e-25 120.2 135 54.8
VMungo0540G0304 Vigna mungo HOM05D007507 ORTHO05D009420 2.4e-25 119.4 124 54.8
Manes.17G048900 Manihot esculenta HOM05D007507 ORTHO05D009420 4.1e-25 118.6 134 50.7
Gorai.010G158100 Gossypium raimondii HOM05D007507 ORTHO05D009420 5.4e-25 118.2 142 52.8
HanXRQChr04g0113131 Helianthus annuus HOM05D007507 ORTHO05D009420 5.4e-25 118.2 137 47.4
Lsat_1_v5_gn_7_22681 Lactuca sativa HOM05D007507 ORTHO05D009420 9.1e-25 117.5 137 48.9
Sabra04G0030100 Salix brachista HOM05D007507 ORTHO05D009420 2.7e-24 115.9 132 50.8
Gohir.D06G135900 Gossypium hirsutum HOM05D007507 ORTHO05D009420 7.7e-24 114.4 142 52.1
Hma1.2p1_0558F.1_g178550 Hydrangea macrophylla HOM05D007507 ORTHO05D009420 7.7e-24 114.4 116 56.0
MBI07_g29118_MAGBIO Magnolia biondii HOM05D007507 ORTHO05D009420 1.7e-23 113.2 135 48.9
Cc02_g13780 Coffea canephora HOM05D007507 ORTHO05D009420 3.8e-23 112.1 134 47.0
Sopen02g022610 Solanum pennellii HOM05D007507 ORTHO05D009420 3.8e-23 112.1 141 44.7
Solyc02g077720.4 Solanum lycopersicum HOM05D007507 ORTHO05D009420 3.2e-22 109.0 141 44.0
DCAR_004049 Daucus carota HOM05D007507 ORTHO05D009420 2.8e-21 105.9 139 48.9
ClCG01G023220 Citrullus lanatus HOM05D007507 ORTHO05D009420 4.7e-21 105.1 140 44.3
Haze_06387 Corylus avellana HOM05D007507 ORTHO05D009420 2.3e-20 102.8 135 45.9
Aqoxy4G00641 Aquilegia oxysepala HOM05D007507 ORTHO05D009420 3.4e-19 99.0 126 47.6
CsaV3_6G050370 Cucumis sativus L. HOM05D007507 ORTHO05D009420 1.7e-18 96.7 141 42.6
PSO675G6999 Papaver somniferum HOM05D007507 ORTHO05D009420 1.4e-17 93.6 136 43.4
Migut.H01473 Erythranthe guttata HOM05D007507 ORTHO05D009420 3.1e-17 92.4 144 42.4
Nitab4.5_0002813g0060 Nicotiana tabacum HOM05D007507 ORTHO05D009420 4.1e-17 92.0 122 44.3
Sed0011593 Sechium edule HOM05D007507 ORTHO05D009420 4.1e-17 92.0 117 48.7
MSTRG.14710 Avicennia marina HOM05D007507 ORTHO05D009420 1.6e-16 90.1 128 45.3
Nitab4.5_0007893g0030 Nicotiana tabacum HOM05D007507 ORTHO05D009420 1.7e-15 86.7 122 44.3
Oeu015676.1 Olea europaea HOM05D007507 ORTHO05D009420 5.0e-15 85.1 116 45.7
Oeu027697.1 Olea europaea HOM05D007507 ORTHO05D009420 5.0e-15 85.1 116 46.6
ECA236G3296 Erigeron canadensis HOM05D007507 ORTHO05D009420 1.1e-14 84.0 82 59.8
Oeu064800.1 Olea europaea HOM05D007507 ORTHO05D009420 5.6e-14 81.6 116 41.4
Psat1g203160 Pisum sativum HOM05D007507 ORTHO05D009420 5.6e-14 81.6 91 48.4
SEGI_17757 Sequoiadendron giganteum HOM05D007507 ORTHO05D009420 9.5e-14 80.9 77 53.2
DCAR_008007 Daucus carota HOM05D007507 ORTHO05D009420 1.8e-12 76.6 133 37.6
Migut.M01111 Erythranthe guttata HOM05D007507 ORTHO05D009420 2.3e-12 76.3 133 37.6
MELO3C007264.2 Cucumis melo HOM05D007507 ORTHO05D009420 3.0e-12 75.9 101 46.5
PSO541G3558 Papaver somniferum HOM05D007507 ORTHO05D009420 1.2e-11 73.9 79 53.2
SEGI_36970 Sequoiadendron giganteum HOM05D007507 ORTHO05D009420 2.0e-11 73.2 88 50.0
SEGI_35508 Sequoiadendron giganteum HOM05D007507 ORTHO05D009420 8.3e-10 67.8 73 45.2
Rhsim13G0180100 Rhododendron simsii HOM05D007507 ORTHO05D009420 1.8e-09 66.6 79 44.3
Duzib128G0537 Durio zibethinus HOM05D003527 ORTHO05D004099 3.0e-07 59.3 108 38.9
SalBow8G4682 Salvia bowleyana HOM05D007507 ORTHO05D009420 5.0e-07 58.5 131 37.4
FAN16G0579 Fragaria x ananassa HOM05D003527 ORTHO05D004099 6.6e-07 58.2 103 40.8
FAN25G2547 Fragaria x ananassa HOM05D003527 ORTHO05D004099 6.6e-07 58.2 103 39.8
Oeu024354.1 Olea europaea HOM05D003527 ORTHO05D004099 6.6e-07 58.2 85 43.5
Sed0011659 Sechium edule HOM05D003527 ORTHO05D004099 8.6e-07 57.8 72 45.8
PSO339G4025 Papaver somniferum HOM05D003527 ORTHO05D004099 1.1e-06 57.4 66 48.5
PSO384G3887 Papaver somniferum HOM05D003527 ORTHO05D004099 1.1e-06 57.4 66 48.5
COL.COLO4_14818 Corchorus olitorius HOM05D003527 ORTHO05D004099 1.5e-06 57.0 66 50.0
Nn2g10383 Nelumbo nucifera HOM05D003527 ORTHO05D004099 1.5e-06 57.0 66 48.5
VMungo1383G0208 Vigna mungo HOM05D003527 ORTHO05D004099 1.5e-06 57.0 92 40.2
Aqoxy4G02910 Aquilegia oxysepala HOM05D003527 ORTHO05D004099 1.9e-06 56.6 70 45.7
Potri.006G084400 Populus trichocarpa HOM05D003527 ORTHO05D004099 1.9e-06 56.6 77 44.2
TAR636G1653 Trochodendron aralioides HOM05D003527 ORTHO05D004099 1.9e-06 56.6 70 45.7
arahy.Tifrunner.gnm1.ann1.PE4GJ8 Arachis hypogaea HOM05D000372 ORTHO05D009420 2.5e-06 56.2 56 55.4
Lj2A96T67 Lonicera japonica HOM05D003527 ORTHO05D004099 2.5e-06 56.2 69 47.8
MBI14_g37823_MAGBIO Magnolia biondii HOM05D003527 ORTHO05D004099 2.5e-06 56.2 66 48.5
Sabra06G0064100 Salix brachista HOM05D006626 ORTHO05D007352 2.5e-06 56.2 76 43.4
SalBow8G0489 Salvia bowleyana HOM05D007507 ORTHO05D009420 2.5e-06 56.2 72 50.0
Thecc.05G040900 Theobroma cacao HOM05D003527 ORTHO05D004099 2.5e-06 56.2 66 47.0
Duzib093G1072 Durio zibethinus HOM05D003527 ORTHO05D004099 3.3e-06 55.8 66 48.5
Lsat_1_v5_gn_9_23221 Lactuca sativa HOM05D003527 ORTHO05D004099 3.3e-06 55.8 75 44.0
Prupe.6G079000 Prunus persica HOM05D003527 ORTHO05D004099 3.3e-06 55.8 103 36.9
TAR633G1470 Trochodendron aralioides HOM05D003527 ORTHO05D004099 3.3e-06 55.8 70 45.7
ATR0559G115 Amborella trichopoda HOM05D003527 ORTHO05D004099 4.3e-06 55.5 121 34.7
CSS0030599 Camellia sinensis var. sinensis HOM05D003527 ORTHO05D004099 4.3e-06 55.5 121 32.2
Dinv12411 Davidia involucrata HOM05D003527 ORTHO05D004099 4.3e-06 55.5 70 44.3
Migut.J00336 Erythranthe guttata HOM05D003527 ORTHO05D004099 4.3e-06 55.5 89 40.4
FAN11G1093 Fragaria x ananassa HOM05D003527 ORTHO05D004099 4.3e-06 55.5 110 39.1
FAN21G2526 Fragaria x ananassa HOM05D003527 ORTHO05D004099 4.3e-06 55.5 75 42.7
Phvul.008G099800 Phaseolus vulgaris HOM05D003527 ORTHO05D004099 4.3e-06 55.5 92 40.2
Psat0s4138g0040 Pisum sativum HOM05D003527 ORTHO05D004099 5.6e-06 55.1 87 37.9
HanXRQChr05g0134511 Helianthus annuus HOM05D003527 ORTHO05D004099 7.3e-06 54.7 65 46.2
MD03G1096000 Malus domestica HOM05D003527 ORTHO05D004099 7.3e-06 54.7 115 36.5
TWI74G0830 Tripterygium wilfordii HOM05D003527 ORTHO05D004099 7.3e-06 54.7 67 49.3
MSTRG.19089 Avicennia marina HOM05D003527 ORTHO05D004099 9.5e-06 54.3 95 38.9
Ciclev10012740m.g Citrus clementina HOM05D003527 ORTHO05D004099 9.5e-06 54.3 66 48.5
Peaxi162Scf00926g00516 Petunia axillaris HOM05D007507 ORTHO05D009420 9.5e-06 54.3 124 32.3
RcHm_v2.0_Chr5g0064221 Rosa chinensis HOM05D003527 ORTHO05D004099 9.5e-06 54.3 102 39.2


User provided reference genes

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