Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G047000 Prunus persica HOM05D003815 ORTHO05D004580 3.3e-147 525.0 267 100.0
RcHm_v2.0_Chr5g0008351 Rosa chinensis HOM05D003815 ORTHO05D004580 9.8e-123 443.7 266 84.6
TAR629G1246 Trochodendron aralioides HOM05D003815 ORTHO05D004580 2.7e-120 435.6 260 83.5
GSVIVG01005203001 Vitis vinifera HOM05D003815 ORTHO05D004580 4.5e-120 434.9 261 83.9
QL05p040244 Quercus lobata HOM05D003815 ORTHO05D004580 7.7e-120 434.1 261 83.1
Actinidia01882 Actinidia chinensis HOM05D003815 ORTHO05D004580 3.8e-119 431.8 264 84.1
Cfa000456 Carpinus fangiana HOM05D003815 ORTHO05D004580 5.0e-119 431.4 262 83.2
CiPaw.09G059900 Carya illinoinensis HOM05D003815 ORTHO05D004580 9.5e-118 427.2 250 85.2
Actinidia09679 Actinidia chinensis HOM05D003815 ORTHO05D004580 6.1e-117 424.5 261 80.1
Dinv04311 Davidia involucrata HOM05D003815 ORTHO05D004580 8.0e-117 424.1 262 81.3
TWI38G0676 Tripterygium wilfordii HOM05D003815 ORTHO05D004580 3.0e-116 422.2 263 80.6
MBI07_g32649_MAGBIO Magnolia biondii HOM05D003815 ORTHO05D004580 1.5e-115 419.9 270 78.5
Potri.011G120100 Populus trichocarpa HOM05D003815 ORTHO05D004580 2.0e-115 419.5 261 80.5
Eucgr.F01118 Eucalyptus grandis HOM05D003815 ORTHO05D004580 7.5e-115 417.5 253 82.6
Nn1g06558 Nelumbo nucifera HOM05D003815 ORTHO05D004580 1.3e-114 416.8 265 78.5
PGSC0003DMG400025035 Solanum tuberosum HOM05D003815 ORTHO05D004580 1.3e-114 416.8 262 80.5
Nn1g04083 Nelumbo nucifera HOM05D003815 ORTHO05D004580 1.7e-114 416.4 259 79.9
Ciclev10009061m.g Citrus clementina HOM05D003815 ORTHO05D004580 3.7e-114 415.2 260 80.8
PSO541G6182 Papaver somniferum HOM05D003815 ORTHO05D004580 3.7e-114 415.2 260 78.8
vmacro11847 Vaccinium macrocarpon HOM05D003815 ORTHO05D004580 3.7e-114 415.2 251 80.1
GSVIVG01014351001 Vitis vinifera HOM05D003815 ORTHO05D004580 6.3e-114 414.5 262 78.6
PSO675G7971 Papaver somniferum HOM05D003815 ORTHO05D004580 8.3e-114 414.1 260 78.5
PGR083G0800 Punica granatum HOM05D003815 ORTHO05D004580 8.3e-114 414.1 262 79.8
DCAR_014380 Daucus carota HOM05D003815 ORTHO05D004580 1.1e-113 413.7 262 79.8
TWI38G0767 Tripterygium wilfordii HOM05D003815 ORTHO05D004580 1.4e-113 413.3 252 81.3
Sabra16G0263000 Salix brachista HOM05D003815 ORTHO05D004580 1.8e-113 412.9 261 79.7
Manes.03G110800 Manihot esculenta HOM05D003815 ORTHO05D004580 2.4e-113 412.5 262 79.4
Sopen10g002890 Solanum pennellii HOM05D003815 ORTHO05D004580 2.4e-113 412.5 262 79.8
Thecc.07G083700 Theobroma cacao HOM05D003815 ORTHO05D004580 2.4e-113 412.5 253 80.2
ATR0605G309 Amborella trichopoda HOM05D003815 ORTHO05D004580 5.4e-113 411.4 254 80.7
CSS0007181 Camellia sinensis var. sinensis HOM05D003815 ORTHO05D004580 7.0e-113 411.0 267 77.5
Aqoxy1G02432 Aquilegia oxysepala HOM05D003815 ORTHO05D004580 9.2e-113 410.6 263 78.7
MSTRG.15225 Avicennia marina HOM05D003815 ORTHO05D004580 9.2e-113 410.6 262 77.1
Nitab4.5_0001551g0080 Nicotiana tabacum HOM05D003815 ORTHO05D004580 9.2e-113 410.6 251 82.1
PGR004G1265 Punica granatum HOM05D003815 ORTHO05D004580 9.2e-113 410.6 253 80.2
Solyc10g006980.3 Solanum lycopersicum HOM05D003815 ORTHO05D004580 9.2e-113 410.6 252 81.7
CSS0031480 Camellia sinensis var. sinensis HOM05D003815 ORTHO05D004580 1.2e-112 410.2 254 79.1
Migut.M00813 Erythranthe guttata HOM05D003815 ORTHO05D004580 1.2e-112 410.2 251 79.7
CAN.G162.63 Capsicum annuum HOM05D003815 ORTHO05D004580 1.6e-112 409.8 251 82.1
Cfa020596 Carpinus fangiana HOM05D003815 ORTHO05D004580 2.7e-112 409.1 251 81.7
SalBow8G0761 Salvia bowleyana HOM05D003815 ORTHO05D004580 2.7e-112 409.1 266 77.4
Gohir.A04G029700 Gossypium hirsutum HOM05D003815 ORTHO05D004580 3.5e-112 408.7 261 77.8
Sabra11G0104500 Salix brachista HOM05D003815 ORTHO05D004580 3.5e-112 408.7 261 77.8
A08p01870 Brassica napus HOM05D003815 ORTHO05D004580 4.6e-112 408.3 260 77.7
Gorai.009G389800 Gossypium raimondii HOM05D003815 ORTHO05D004580 5.9e-112 407.9 253 79.4
BcaC01g01350 Brassica carinata HOM05D003815 ORTHO05D004580 7.8e-112 407.5 258 77.9
C03p90950 Brassica napus HOM05D003815 ORTHO05D004580 7.8e-112 407.5 258 77.9
BolC3t21419H Brassica oleracea HOM05D003815 ORTHO05D004580 7.8e-112 407.5 258 77.9
Gohir.D05G357300 Gossypium hirsutum HOM05D003815 ORTHO05D004580 1.0e-111 407.1 253 79.4
Peaxi162Scf00027g02616 Petunia axillaris HOM05D003815 ORTHO05D004580 1.3e-111 406.8 262 78.6
Lalb_Chr03g0030621 Lupinus albus HOM05D003815 ORTHO05D004580 1.7e-111 406.4 256 78.9
Sp1g39560 Schrenkiella parvula HOM05D003815 ORTHO05D004580 1.7e-111 406.4 261 77.0
Sc07g0002580 Simmondsia chinensis HOM05D003815 ORTHO05D004580 1.7e-111 406.4 251 79.7
Cc05_g12120 Coffea canephora HOM05D003815 ORTHO05D004580 2.3e-111 406.0 263 76.4
Nitab4.5_0002383g0120 Nicotiana tabacum HOM05D003815 ORTHO05D004580 2.3e-111 406.0 251 80.5
Nitab4.5_0003688g0100 Nicotiana tabacum HOM05D003815 ORTHO05D004580 2.3e-111 406.0 253 80.2
AL1G61340 Arabidopsis lyrata HOM05D003815 ORTHO05D004580 2.9e-111 405.6 261 77.4
BraA08t32239Z Brassica rapa HOM05D003815 ORTHO05D004580 2.9e-111 405.6 258 77.5
Nitab4.5_0000207g0160 Nicotiana tabacum HOM05D003815 ORTHO05D004580 2.9e-111 405.6 261 78.5
BcaB04g17128 Brassica carinata HOM05D003815 ORTHO05D004580 3.9e-111 405.2 261 76.2
Glyma.06G245100 Glycine max HOM05D003815 ORTHO05D004580 3.9e-111 405.2 256 80.1
Phvul.011G157900 Phaseolus vulgaris HOM05D003815 ORTHO05D004580 3.9e-111 405.2 271 77.1
Thhalv10011698m.g Eutrema salsugineum HOM05D003815 ORTHO05D004580 5.0e-111 404.8 262 76.3
Oeu005415.1 Olea europaea HOM05D003815 ORTHO05D004580 5.0e-111 404.8 261 78.2
Atru.chr2.2652 Acer truncatum HOM05D003815 ORTHO05D004580 6.6e-111 404.4 263 79.1
COL.COLO4_09397 Corchorus olitorius HOM05D003815 ORTHO05D004580 6.6e-111 404.4 253 80.2
Carub.0001s4215 Capsella rubella HOM05D003815 ORTHO05D004580 8.6e-111 404.1 260 76.9
AT1G53000 Arabidopsis thaliana HOM05D003815 ORTHO05D004580 1.1e-110 403.7 261 77.0
CARHR043220 Cardamine hirsuta HOM05D003815 ORTHO05D004580 1.1e-110 403.7 251 78.5
QL08p021520 Quercus lobata HOM05D003815 ORTHO05D004580 1.1e-110 403.7 272 76.5
Glyma.12G151500 Glycine max HOM05D003815 ORTHO05D004580 1.5e-110 403.3 253 80.2
EL10Ac4g08152 Beta vulgaris HOM05D003815 ORTHO05D004580 1.9e-110 402.9 261 76.6
Lsat_1_v5_gn_7_21261 Lactuca sativa HOM05D003815 ORTHO05D004580 1.9e-110 402.9 265 77.0
Lj3g0026961 Lotus japonicus HOM05D003815 ORTHO05D004580 1.9e-110 402.9 251 78.9
AUR62029379 Chenopodium quinoa HOM05D003815 ORTHO05D004580 2.5e-110 402.5 260 78.5
Lj1A1206T62 Lonicera japonica HOM05D003815 ORTHO05D004580 2.5e-110 402.5 283 73.9
Duzib170G0119 Durio zibethinus HOM05D003815 ORTHO05D004580 3.3e-110 402.1 262 77.1
Potri.001G400900 Populus trichocarpa HOM05D003815 ORTHO05D004580 3.3e-110 402.1 261 77.0
QL05p086088 Quercus lobata HOM05D003815 ORTHO05D004580 3.3e-110 402.1 272 76.5
Hund02213 Selenicereus undatus HOM05D003815 ORTHO05D004580 7.3e-110 401.0 261 78.5
BcaB02g10966 Brassica carinata HOM05D003815 ORTHO05D004580 9.5e-110 400.6 260 75.4
C06p14350 Brassica napus HOM05D003815 ORTHO05D004580 9.5e-110 400.6 261 76.6
CDE10G1101 Ceratophyllum demersum HOM05D003815 ORTHO05D004580 9.5e-110 400.6 262 77.5
MD03G1226400 Malus domestica HOM05D003815 ORTHO05D004580 9.5e-110 400.6 261 77.8
Lalb_Chr01g0006511 Lupinus albus HOM05D003815 ORTHO05D004580 1.2e-109 400.2 261 77.4
unitig_899.g15563 Utricularia gibba HOM05D003815 ORTHO05D004580 1.2e-109 400.2 260 76.2
Ah.06g184010 Amaranthus hybridus HOM05D003815 ORTHO05D004580 1.6e-109 399.8 262 76.7
ECA238G0528 Erigeron canadensis HOM05D003815 ORTHO05D004580 1.6e-109 399.8 253 78.3
Psat5g229040 Pisum sativum HOM05D003815 ORTHO05D004580 1.6e-109 399.8 252 78.6
Lj3g0002488 Lotus japonicus HOM05D003815 ORTHO05D004580 2.8e-109 399.1 267 76.0
SEGI_36185 Sequoiadendron giganteum HOM05D003815 ORTHO05D004580 3.6e-109 398.7 266 76.7
CAN.G1110.56 Capsicum annuum HOM05D003815 ORTHO05D004580 4.7e-109 398.3 237 84.0
THA.LOC104818073 Tarenaya hassleriana HOM05D003815 ORTHO05D004580 6.2e-109 397.9 262 75.2
MELO3C016515.2 Cucumis melo HOM05D003815 ORTHO05D004580 8.0e-109 397.5 262 77.5
CsaV3_3G006290 Cucumis sativus L. HOM05D003815 ORTHO05D004580 8.0e-109 397.5 262 76.7
SGA_v2.0_scaffold73G24269 Striga asiatica HOM05D003815 ORTHO05D004580 1.0e-108 397.1 243 81.1
HanXRQChr11g0328431 Helianthus annuus HOM05D003815 ORTHO05D004580 3.1e-108 395.6 261 77.0
arahy.Tifrunner.gnm1.ann1.46T9HD Arachis hypogaea HOM05D003815 ORTHO05D004580 5.2e-108 394.8 249 79.1
A05p18730 Brassica napus HOM05D003815 ORTHO05D004580 5.2e-108 394.8 258 75.2
MD11G1244700 Malus domestica HOM05D003815 ORTHO05D004580 5.2e-108 394.8 262 76.0
BraA05t20769Z Brassica rapa HOM05D003815 ORTHO05D004580 6.8e-108 394.4 253 75.9
Medtr1g057850 Medicago truncatula HOM05D003815 ORTHO05D004580 6.8e-108 394.4 251 78.1
TPR.G454 Trifolium pratense HOM05D003815 ORTHO05D004580 8.9e-108 394.0 252 78.2
RcHm_v2.0_Chr5g0033991 Rosa chinensis HOM05D003815 ORTHO05D004580 1.2e-107 393.7 259 76.4
FAN11G0414 Fragaria x ananassa HOM05D003815 ORTHO05D004580 9.8e-107 390.6 253 76.7
Prupe.4G183000 Prunus persica HOM05D003815 ORTHO05D004580 9.8e-107 390.6 265 75.1
Aa31LG10G2090 Aethionema arabicum HOM05D003815 ORTHO05D004580 1.3e-106 390.2 261 74.7
Lsat_1_v5_gn_7_105160 Lactuca sativa HOM05D003815 ORTHO05D004580 2.2e-106 389.4 246 80.5
FAN16G0735 Fragaria x ananassa HOM05D003815 ORTHO05D004580 2.9e-106 389.0 269 73.6
FAN25G2093 Fragaria x ananassa HOM05D003815 ORTHO05D004580 8.3e-106 387.5 268 73.9
SGA_v2.0_scaffold34G13823 Striga asiatica HOM05D003815 ORTHO05D004580 8.3e-106 387.5 254 76.8
Sed0012787 Sechium edule HOM05D003815 ORTHO05D004580 9.2e-105 384.0 262 75.6
FAN21G2274 Fragaria x ananassa HOM05D003815 ORTHO05D004580 1.2e-104 383.6 253 76.3
AUR62034260 Chenopodium quinoa HOM05D003815 ORTHO05D004580 2.7e-104 382.5 255 76.1
HPP92_021319 Vanilla planifolia HOM05D003815 ORTHO05D004580 1.5e-102 376.7 268 72.4
Haze_06461 Corylus avellana HOM05D003815 ORTHO05D004580 3.3e-102 375.6 249 77.5
Peaxi162Scf00069g01341 Petunia axillaris HOM05D003815 ORTHO05D004580 1.2e-101 373.6 261 74.3
Os05g0561500 Oryza sativa ssp. japonica HOM05D003815 ORTHO05D004580 2.8e-101 372.5 264 72.7
ClCG10G006920 Citrullus lanatus HOM05D003815 ORTHO05D004580 4.7e-101 371.7 275 71.3
Duzib213G0989 Durio zibethinus HOM05D003815 ORTHO05D004580 8.1e-101 370.9 253 75.5
Zm00001eb343610 Zea mays HOM05D003815 ORTHO05D004580 4.0e-100 368.6 266 71.1
Lj8A54T73 Lonicera japonica HOM05D003815 ORTHO05D004580 1.3e-98 363.6 278 67.3
arahy.Tifrunner.gnm1.ann1.NKF69P Arachis hypogaea HOM05D003815 ORTHO05D004580 1.1e-97 360.5 256 71.9
Rhsim06G0197600 Rhododendron simsii HOM05D003815 ORTHO05D004580 4.6e-96 355.1 190 88.9
Haze_09417 Corylus avellana HOM05D003815 ORTHO05D004580 3.9e-95 352.1 333 59.8
Mapoly0026s0027 Marchantia polymorpha HOM05D003815 ORTHO05D004580 2.1e-93 346.3 250 70.0
CiPaw.11G168500 Carya illinoinensis HOM05D003815 ORTHO05D004580 2.8e-93 345.9 190 87.9
AagrBONN_evm.TU.Sc2ySwM_344.3202 Anthoceros agrestis HOM05D003815 ORTHO05D004580 1.1e-92 344.0 219 75.8
BcaC08g44025 Brassica carinata HOM05D003815 ORTHO05D004580 1.4e-92 343.6 256 68.0
Pp3c7_2170 Physcomitrium patens HOM05D003815 ORTHO05D004580 4.0e-92 342.0 248 67.3
SMO196G0043 Selaginella moellendorffii HOM05D003815 ORTHO05D004580 6.8e-92 341.3 222 75.2
Ca_12190_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 5.4e-89 331.6 187 86.1
Ca_30578_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 5.4e-89 331.6 187 86.1
FvH4_3g20180 Fragaria vesca HOM05D003815 ORTHO05D004580 1.2e-88 330.5 222 73.9
CBR_g31446 Chara braunii HOM05D003815 ORTHO05D004580 1.6e-85 320.1 222 69.4
Dinv40557 Davidia involucrata HOM05D003815 ORTHO05D004580 1.4e-84 317.0 169 90.5
Actinidia12813 Actinidia chinensis HOM05D003815 ORTHO05D004580 1.6e-80 303.5 267 62.5
PGSC0003DMG402012419 Solanum tuberosum HOM05D003815 ORTHO05D004580 2.3e-79 299.7 187 81.3
PSO017G1411 Papaver somniferum HOM05D003815 ORTHO05D004580 1.9e-73 280.0 190 74.2
Duzib064G0003 Durio zibethinus HOM05D003815 ORTHO05D004580 1.2e-72 277.3 151 88.1
Cpa.g.sc80.53 Carica papaya HOM05D003815 ORTHO05D004580 7.9e-72 274.6 151 86.8
Lj3g0013472 Lotus japonicus HOM05D003815 ORTHO05D004580 9.6e-70 267.7 151 85.4
Eucgr.F01114 Eucalyptus grandis HOM05D003815 ORTHO05D004580 1.6e-69 266.9 190 74.7
Oeu060549.1 Olea europaea HOM05D003815 ORTHO05D004580 1.6e-69 266.9 182 74.2
Duzib064G0004 Durio zibethinus HOM05D003815 ORTHO05D004580 3.2e-65 252.7 143 85.3
AagrBONN_evm.TU.Sc2ySwM_340.276 Anthoceros agrestis HOM05D003815 ORTHO05D004580 2.7e-64 249.6 194 64.9
BcaB07g33367 Brassica carinata HOM05D003815 ORTHO05D004580 5.5e-57 225.3 209 60.8
ATR0730G188 Amborella trichopoda HOM05D003815 ORTHO05D004580 1.4e-49 200.7 116 83.6
C07p00250 Brassica napus HOM05D003815 ORTHO05D004580 1.6e-45 187.2 119 71.4
Pp3c11_23350 Physcomitrium patens HOM05D003815 ORTHO05D004580 2.0e-43 180.3 254 44.1
BolC7t40476H Brassica oleracea HOM05D003815 ORTHO05D004580 3.9e-39 166.0 105 72.4
Hma1.2p1_0000F.1_g000160 Hydrangea macrophylla HOM05D003815 ORTHO05D004580 4.1e-36 156.0 86 84.9
Haze_06417 Corylus avellana HOM05D003815 ORTHO05D004580 1.5e-35 154.1 116 68.1
Haze_06421 Corylus avellana HOM05D003815 ORTHO05D004580 4.5e-35 152.5 94 80.9
BcaC06g36757 Brassica carinata HOM05D003815 ORTHO05D004580 5.0e-34 149.1 96 71.9
Lj8A156T78 Lonicera japonica HOM05D003815 ORTHO05D004580 1.8e-31 140.6 89 78.7
Actinidia05634 Actinidia chinensis HOM05D003815 ORTHO05D004580 2.8e-29 133.3 82 78.0
MCO07G610 Micromonas commoda HOM05D003815 ORTHO05D004580 5.3e-28 129.0 226 36.3
Lj3g0015923 Lotus japonicus HOM05D003815 ORTHO05D004580 5.0e-26 122.5 191 44.0
BcaC08g43686 Brassica carinata HOM05D003815 ORTHO05D004580 3.2e-25 119.8 66 87.9
BolC6t36186H Brassica oleracea HOM05D003815 ORTHO05D004580 3.2e-25 119.8 66 87.9
CBR_g29613 Chara braunii HOM05D003815 ORTHO05D004580 1.1e-20 104.8 146 43.8
BolC6t36614H Brassica oleracea HOM05D003815 ORTHO05D004580 1.2e-19 101.3 86 60.5
PSO017G7235 Papaver somniferum HOM05D003815 ORTHO05D004580 3.4e-14 83.2 53 71.7
Oeu044430.1 Olea europaea HOM05D003815 ORTHO05D004580 7.5e-14 82.0 79 51.9
BolC9t59438H Brassica oleracea HOM05D003815 ORTHO05D004580 4.1e-12 76.3 92 48.9
ATR0730G237 Amborella trichopoda HOM05D003815 ORTHO05D004580 5.4e-12 75.9 71 59.2
Ca_12192_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 6.5e-10 68.9 64 62.5
Ca_30580_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 6.5e-10 68.9 64 62.5
C09p66180 Brassica napus HOM05D003815 ORTHO05D004580 1.5e-09 67.8 103 41.7
Actinidia24031 Actinidia chinensis HOM05D003815 ORTHO05D004580 4.2e-09 66.2 34 88.2
Actinidia16545 Actinidia chinensis HOM05D003815 ORTHO05D056144 4.7e-08 62.8 42 76.2
Sopen05g017440 Solanum pennellii HOM05D003815 ORTHO05D004580 8.0e-08 62.0 90 43.3
Oeu026881.1 Olea europaea HOM05D001611 ORTHO05D001464 1.8e-07 60.8 57 47.4
COL.COLO4_31682 Corchorus olitorius HOM05D000007 ORTHO05D000017 3.0e-07 60.1 43 69.8
Actinidia37470 Actinidia chinensis HOM05D003815 ORTHO05D004218 5.2e-07 59.3 35 80.0
COL.COLO4_36023 Corchorus olitorius HOM05D006127 ORTHO05D161883 7.5e-06 55.5 37 73.0
MCO17G054 Micromonas commoda HOM05D003815 ORTHO05D270498 7.5e-06 55.5 67 40.3


User provided reference genes

Program Settings