Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G046300 Prunus persica HOM05D006133 ORTHO05D007855 4.5e-104 381.3 203 100.0
FvH4_3g09320 Fragaria vesca HOM05D006133 ORTHO05D007855 7.5e-83 310.8 208 81.7
RcHm_v2.0_Chr5g0008281 Rosa chinensis HOM05D006133 ORTHO05D007855 1.3e-82 310.1 208 81.7
FAN16G1924 Fragaria x ananassa HOM05D006133 ORTHO05D007855 1.8e-76 289.7 213 77.0
Manes.16G026900 Manihot esculenta HOM05D006133 ORTHO05D007855 4.1e-73 278.5 210 73.3
QL05p040164 Quercus lobata HOM05D006133 ORTHO05D007855 1.0e-71 273.9 208 72.6
Cfa000437 Carpinus fangiana HOM05D006133 ORTHO05D007855 3.9e-71 271.9 212 71.2
Haze_06477 Corylus avellana HOM05D006133 ORTHO05D007855 6.6e-71 271.2 213 70.9
Thecc.06G188500 Theobroma cacao HOM05D006133 ORTHO05D007855 8.6e-71 270.8 210 72.4
CiPaw.09G059200 Carya illinoinensis HOM05D006133 ORTHO05D007855 1.2e-69 266.9 204 71.1
Gorai.011G027600 Gossypium raimondii HOM05D006133 ORTHO05D007855 3.6e-69 265.4 212 70.8
Atru.chr10.1894 Acer truncatum HOM05D006133 ORTHO05D007855 8.9e-68 260.8 210 68.6
MD05G1313300 Malus domestica HOM05D006133 ORTHO05D007855 8.9e-68 260.8 149 90.6
Glyma.13G179800 Glycine max HOM05D006133 ORTHO05D007855 1.2e-67 260.4 215 67.9
Hma1.2p1_0785F.1_g217580 Hydrangea macrophylla HOM05D006133 ORTHO05D007855 2.0e-67 259.6 220 67.3
Dinv40551 Davidia involucrata HOM05D006133 ORTHO05D007855 2.6e-67 259.2 212 69.8
Gohir.A10G025600 Gossypium hirsutum HOM05D006133 ORTHO05D007855 2.6e-67 259.2 212 68.9
Lj1A1206T67 Lonicera japonica HOM05D006133 ORTHO05D007855 1.7e-66 256.5 212 67.5
Potri.004G042800 Populus trichocarpa HOM05D006133 ORTHO05D007855 2.2e-66 256.1 210 66.2
Glyma.07G196100 Glycine max HOM05D006133 ORTHO05D007855 2.9e-66 255.8 215 67.4
Actinidia05630 Actinidia chinensis HOM05D006133 ORTHO05D007855 8.4e-66 254.2 212 67.5
COL.COLO4_31481 Corchorus olitorius HOM05D006133 ORTHO05D007855 1.1e-65 253.8 208 68.8
MELO3C002599.2 Cucumis melo HOM05D006133 ORTHO05D007855 1.4e-65 253.4 177 75.1
CsaV3_1G012270 Cucumis sativus L. HOM05D006133 ORTHO05D007855 1.4e-65 253.4 177 75.1
Cpa.g.sc27.45 Carica papaya HOM05D006133 ORTHO05D007855 2.4e-65 252.7 207 67.6
CSS0047692 Camellia sinensis var. sinensis HOM05D006133 ORTHO05D007855 3.2e-65 252.3 211 67.3
ECA234G2723 Erigeron canadensis HOM05D006133 ORTHO05D007855 4.1e-65 251.9 204 67.6
Lj4g0021405 Lotus japonicus HOM05D006133 ORTHO05D007855 9.2e-65 250.8 217 66.4
Phvul.002G234200 Phaseolus vulgaris HOM05D006133 ORTHO05D007855 1.2e-64 250.4 215 65.6
arahy.Tifrunner.gnm1.ann1.YAJ938 Arachis hypogaea HOM05D006133 ORTHO05D007855 1.6e-64 250.0 224 63.8
ClCG03G006010 Citrullus lanatus HOM05D006133 ORTHO05D007855 1.6e-64 250.0 210 66.2
Cc02_g13300 Coffea canephora HOM05D006133 ORTHO05D007855 3.5e-64 248.8 211 64.5
Migut.M01145 Erythranthe guttata HOM05D006133 ORTHO05D007855 5.1e-63 245.0 212 65.1
Hund23731 Selenicereus undatus HOM05D006133 ORTHO05D007855 5.1e-63 245.0 212 66.0
Sc05g0007700 Simmondsia chinensis HOM05D006133 ORTHO05D007855 5.1e-63 245.0 210 67.6
THA.LOC104814218 Tarenaya hassleriana HOM05D006133 ORTHO05D007855 1.1e-62 243.8 210 65.2
arahy.Tifrunner.gnm1.ann1.Y5A5WX Arachis hypogaea HOM05D006133 ORTHO05D007855 1.9e-62 243.0 212 64.2
Hund23730 Selenicereus undatus HOM05D006133 ORTHO05D007855 2.5e-62 242.7 212 65.6
TAR628G0719 Trochodendron aralioides HOM05D006133 ORTHO05D007855 4.3e-62 241.9 210 63.8
VMungo0251G0712 Vigna mungo HOM05D006133 ORTHO05D007855 2.8e-61 239.2 215 63.3
Medtr4g088855 Medicago truncatula HOM05D006133 ORTHO05D007855 4.7e-61 238.4 211 63.5
Peaxi162Scf00736g00427 Petunia axillaris HOM05D006133 ORTHO05D007855 1.1e-60 237.3 222 64.9
AUR62017011 Chenopodium quinoa HOM05D006133 ORTHO05D007855 1.8e-60 236.5 214 63.1
MBI09_g12165_MAGBIO Magnolia biondii HOM05D006133 ORTHO05D007855 2.4e-60 236.1 209 63.2
Carub.0004s1546 Capsella rubella HOM05D006133 ORTHO05D007855 4.0e-60 235.3 207 62.3
FAN11G1298 Fragaria x ananassa HOM05D006133 ORTHO05D007855 4.0e-60 235.3 158 80.4
TWI38G1277 Tripterygium wilfordii HOM05D006133 ORTHO05D007855 1.2e-59 233.8 210 65.2
Oeu057904.1 Olea europaea HOM05D006133 ORTHO05D007855 4.4e-59 231.9 212 62.3
Duzib235G0895 Durio zibethinus HOM05D006133 ORTHO05D007855 5.8e-59 231.5 169 72.8
AUR62014816 Chenopodium quinoa HOM05D006133 ORTHO05D007855 7.6e-59 231.1 214 62.1
TPR.G12027 Trifolium pratense HOM05D006133 ORTHO05D007855 7.6e-59 231.1 211 62.1
CSS0042278 Camellia sinensis var. sinensis HOM05D006133 ORTHO05D007855 9.9e-59 230.7 211 61.1
FAN25G2154 Fragaria x ananassa HOM05D006133 ORTHO05D007855 1.3e-58 230.3 148 82.4
CARHR127900 Cardamine hirsuta HOM05D006133 ORTHO05D007855 2.2e-58 229.6 213 59.6
FAN21G1061 Fragaria x ananassa HOM05D006133 ORTHO05D007855 2.9e-58 229.2 146 83.6
AL4G29540 Arabidopsis lyrata HOM05D006133 ORTHO05D007855 8.4e-58 227.6 213 59.6
unitig_22.g6229 Utricularia gibba HOM05D006133 ORTHO05D007855 9.3e-57 224.2 181 66.3
CAN.G1164.26 Capsicum annuum HOM05D006133 ORTHO05D007855 1.6e-56 223.4 213 60.6
AT2G33793 Arabidopsis thaliana HOM05D006133 ORTHO05D007855 2.1e-56 223.0 213 58.7
PSO478G5317 Papaver somniferum HOM05D006133 ORTHO05D007855 2.1e-56 223.0 207 58.5
PSO478G1675 Papaver somniferum HOM05D006133 ORTHO05D007855 2.7e-56 222.6 207 58.0
Ah.09g237330 Amaranthus hybridus HOM05D006133 ORTHO05D007855 7.8e-56 221.1 226 58.4
BcaC02g07769 Brassica carinata HOM05D006133 ORTHO05D007855 1.0e-55 220.7 214 57.9
HanXRQChr16g0517711 Helianthus annuus HOM05D006133 ORTHO05D007855 1.0e-55 220.7 200 62.0
BolC4t27810H Brassica oleracea HOM05D006133 ORTHO05D007855 1.3e-55 220.3 215 58.1
Cc01_g03530 Coffea canephora HOM05D006133 ORTHO05D007855 1.3e-55 220.3 169 68.0
Ca_18541_v3 Cicer arietinum L. HOM05D006133 ORTHO05D007855 3.9e-55 218.8 174 67.8
Thhalv10017234m.g Eutrema salsugineum HOM05D006133 ORTHO05D007855 3.9e-55 218.8 212 59.0
Lsat_1_v5_gn_4_52940 Lactuca sativa HOM05D006133 ORTHO05D007855 3.9e-55 218.8 200 61.0
Sopen02g023140 Solanum pennellii HOM05D006133 ORTHO05D007855 5.1e-55 218.4 213 60.6
ATR0584G083 Amborella trichopoda HOM05D006133 ORTHO05D007855 1.5e-54 216.9 197 57.4
Rhsim13G0177600 Rhododendron simsii HOM05D006133 ORTHO05D007855 4.3e-54 215.3 255 54.5
PGSC0003DMG400029689 Solanum tuberosum HOM05D006133 ORTHO05D007855 1.6e-53 213.4 213 59.6
Potri.011G051900 Populus trichocarpa HOM05D006133 ORTHO05D007855 4.0e-52 208.8 210 59.5
Nitab4.5_0007940g0050 Nicotiana tabacum HOM05D006133 ORTHO05D007855 2.0e-51 206.5 213 58.2
Nitab4.5_0003432g0010 Nicotiana tabacum HOM05D006133 ORTHO05D007855 3.8e-50 202.2 213 58.7
Sp4g16180 Schrenkiella parvula HOM05D006133 ORTHO05D007855 6.4e-50 201.4 212 56.1
Solyc02g078280.3 Solanum lycopersicum HOM05D006133 ORTHO05D007855 2.3e-47 193.0 197 58.4
Ciclev10017918m.g Citrus clementina HOM05D006133 ORTHO05D007855 3.0e-47 192.6 145 73.1
Gohir.D10G026300 Gossypium hirsutum HOM05D006133 ORTHO05D007855 3.3e-46 189.1 156 66.7
C04p63360 Brassica napus HOM05D006133 ORTHO05D007855 4.3e-46 188.7 205 52.7
BraA04t18104Z Brassica rapa HOM05D006133 ORTHO05D007855 9.6e-46 187.6 186 57.0
Psat7g113640 Pisum sativum HOM05D006133 ORTHO05D007855 9.6e-46 187.6 214 53.3
Dinv07556 Davidia involucrata HOM05D006133 ORTHO05D007855 1.6e-45 186.8 155 67.7
Nn1g08778 Nelumbo nucifera HOM05D006133 ORTHO05D007855 2.1e-45 186.4 211 52.1
SMO353G0258 Selaginella moellendorffii HOM05D006133 ORTHO05D007855 6.2e-45 184.9 174 54.0
CDE04G1633 Ceratophyllum demersum HOM05D006133 ORTHO05D007855 1.1e-44 184.1 211 52.1
Os03g0837800 Oryza sativa ssp. japonica HOM05D006133 ORTHO05D007855 4.0e-44 182.2 199 49.2
EL10Ac8g20377 Beta vulgaris HOM05D006133 ORTHO05D007855 5.3e-44 181.8 146 67.1
A04p26010 Brassica napus HOM05D006133 ORTHO05D007855 1.2e-43 180.6 216 50.5
BolC4t23106H Brassica oleracea HOM05D006133 ORTHO05D007855 5.8e-43 178.3 195 53.3
Zm00001eb063880 Zea mays HOM05D006133 ORTHO05D007855 7.6e-43 177.9 194 49.0
C04p15330 Brassica napus HOM05D006133 ORTHO05D007855 2.2e-42 176.4 150 62.0
Sed0025328 Sechium edule HOM05D006133 ORTHO05D007855 1.1e-41 174.1 154 61.7
Solyc02g078290.4 Solanum lycopersicum HOM05D006133 ORTHO05D007855 1.1e-41 174.1 161 61.5
BcaC02g11457 Brassica carinata HOM05D006133 ORTHO05D007855 4.2e-41 172.2 150 61.3
DCAR_028075 Daucus carota HOM05D006133 ORTHO05D007855 1.6e-40 170.2 209 51.7
CANSAT35G1333 Cannabis sativa HOM05D006133 ORTHO05D007855 1.6e-37 160.2 175 53.7
Sabra11G0035700 Salix brachista HOM05D006133 ORTHO05D007855 1.6e-37 160.2 210 49.5
AagrBONN_evm.TU.Sc2ySwM_228.202 Anthoceros agrestis HOM05D006133 ORTHO05D007855 3.7e-37 159.1 213 39.4
SGA_v2.0_scaffold22G09717 Striga asiatica HOM05D006133 ORTHO05D007855 1.2e-35 154.1 216 49.5
Cc01_g03500 Coffea canephora HOM05D006133 ORTHO05D007855 4.9e-34 148.7 211 48.3
PGR004G1018 Punica granatum HOM05D006133 ORTHO05D007855 5.5e-33 145.2 215 48.8
Mapoly0103s0052 Marchantia polymorpha HOM05D006133 ORTHO05D007855 3.3e-30 136.0 187 38.0
GSVIVG01033625001 Vitis vinifera HOM05D006133 ORTHO05D007855 1.4e-28 130.6 169 49.7
AL4G11580 Arabidopsis lyrata HOM05D006133 ORTHO05D007855 4.1e-28 129.0 206 42.7
Lalb_Chr05g0218461 Lupinus albus HOM05D006133 ORTHO05D007855 2.6e-27 126.3 213 43.7
Cpa.g.sc39.10 Carica papaya HOM05D006133 ORTHO05D007855 1.4e-25 120.6 132 56.1
BcaB02g10593 Brassica carinata HOM05D006133 ORTHO05D007855 2.5e-22 109.8 178 42.1
HPP92_006840 Vanilla planifolia HOM05D006133 ORTHO05D007855 2.6e-19 99.8 100 58.0
Os07g0256300 Oryza sativa ssp. japonica HOM05D006133 ORTHO05D007855 7.7e-19 98.2 148 39.2
Gohir.A01G166500 Gossypium hirsutum HOM05D006133 ORTHO05D007855 2.5e-17 93.2 88 61.4
Zm00001eb304600 Zea mays HOM05D006133 ORTHO05D007855 5.5e-17 92.0 153 32.7
Prupe.4G042300 Prunus persica HOM05D006133 ORTHO05D007855 2.1e-16 90.1 68 79.4
SGA_v2.0_scaffold499G52489 Striga asiatica HOM05D006133 ORTHO05D007855 1.4e-15 87.4 197 36.0
Eucgr.B00901 Eucalyptus grandis HOM05D006133 ORTHO05D007855 5.1e-15 85.5 105 49.5
Eucgr.B00955 Eucalyptus grandis HOM05D006133 ORTHO05D007855 2.0e-14 83.6 105 48.6
A05p11770 Brassica napus HOM05D006133 ORTHO05D007855 2.5e-14 83.2 95 49.5
Os07g0208801 Oryza sativa ssp. japonica HOM05D006133 ORTHO05D007855 4.8e-13 79.0 67 53.7
Eucgr.B00904 Eucalyptus grandis HOM05D006133 ORTHO05D007855 6.3e-13 78.6 144 38.2
Gohir.A11G286823 Gossypium hirsutum HOM05D006133 ORTHO05D007855 4.1e-12 75.9 73 63.0
Eucgr.B00952 Eucalyptus grandis HOM05D006133 ORTHO05D007855 6.5e-10 68.6 98 41.8
BraA05t20121Z Brassica rapa HOM05D006133 ORTHO05D007855 1.4e-09 67.4 79 49.4
HPP92_006839 Vanilla planifolia HOM05D006133 ORTHO05D007855 1.8e-07 60.5 58 56.9
C04p15300 Brassica napus HOM05D006133 ORTHO05D007855 6.7e-07 58.5 48 66.7
TAR636G0634 Trochodendron aralioides HOM05D006133 ORTHO05D007855 2.6e-06 56.6 135 31.9
Zm00001eb131680 Zea mays HOM05D006133 ORTHO05D446205 9.7e-06 54.7 67 40.3


User provided reference genes

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