Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G044000 Prunus persica HOM05D006332 ORTHO05D008421 2.6e-275 951.4 475 100.0
MD10G1296600 Malus domestica HOM05D006332 ORTHO05D008421 6.6e-231 803.9 446 90.8
MD05G1316100 Malus domestica HOM05D006332 ORTHO05D008421 8.4e-226 786.9 446 88.1
RcHm_v2.0_Chr5g0008031 Rosa chinensis HOM05D006332 ORTHO05D008421 3.9e-223 778.1 439 88.2
FAN16G1437 Fragaria x ananassa HOM05D006332 ORTHO05D008421 1.1e-217 760.0 437 86.7
FvH4_3g04870 Fragaria vesca HOM05D006332 ORTHO05D008421 9.3e-217 756.9 440 85.9
FAN11G2101 Fragaria x ananassa HOM05D003523 ORTHO05D004493 3.3e-214 748.4 439 85.2
FAN21G2488 Fragaria x ananassa HOM05D003523 ORTHO05D004493 6.2e-213 744.2 430 86.0
CiPaw.09G057500 Carya illinoinensis HOM05D006332 ORTHO05D008421 9.6e-206 720.3 442 81.9
QL05p039635 Quercus lobata HOM05D006332 ORTHO05D008421 8.7e-199 697.2 451 78.5
Cpa.g.sc27.66 Carica papaya HOM05D006332 ORTHO05D008421 3.3e-198 695.3 434 80.2
Gohir.D06G130900 Gossypium hirsutum HOM05D006332 ORTHO05D008421 3.3e-198 695.3 442 78.1
Haze_06500 Corylus avellana HOM05D006332 ORTHO05D008421 5.7e-198 694.5 445 78.7
GSVIVG01002030001 Vitis vinifera HOM05D006332 ORTHO05D008421 1.1e-196 690.3 439 77.9
Potri.004G040500 Populus trichocarpa HOM05D006332 ORTHO05D008421 6.9e-196 687.6 431 79.4
Gohir.A06G126100 Gossypium hirsutum HOM05D006332 ORTHO05D008421 1.2e-195 686.8 444 77.0
Thecc.06G190700 Theobroma cacao HOM05D006332 ORTHO05D008421 2.0e-195 686.0 442 77.1
TAR629G2846 Trochodendron aralioides HOM05D006332 ORTHO05D008421 2.6e-195 685.6 440 77.5
Dinv07538 Davidia involucrata HOM05D006332 ORTHO05D008421 5.9e-195 684.5 443 78.1
Duzib235G1125 Durio zibethinus HOM05D006332 ORTHO05D008421 2.9e-194 682.2 439 77.4
Lj1C1207T6 Lonicera japonica HOM05D006332 ORTHO05D008421 3.8e-194 681.8 429 77.6
Manes.16G025600 Manihot esculenta HOM05D006332 ORTHO05D008421 5.0e-194 681.4 442 76.5
Actinidia01892 Actinidia chinensis HOM05D006332 ORTHO05D008421 1.9e-193 679.5 441 76.6
MELO3C002589.2 Cucumis melo HOM05D006332 ORTHO05D008421 2.5e-193 679.1 444 75.9
TWI38G1702 Tripterygium wilfordii HOM05D006332 ORTHO05D008421 3.2e-193 678.7 446 77.8
CANSAT35G2021 Cannabis sativa HOM05D006332 ORTHO05D008421 1.6e-192 676.4 437 78.7
ClCG03G005920 Citrullus lanatus HOM05D006332 ORTHO05D008421 2.7e-192 675.6 443 75.2
CsaV3_1G012160 Cucumis sativus L. HOM05D006332 ORTHO05D008421 2.7e-192 675.6 444 75.5
Hma1.2p1_0881F.1_g231970 Hydrangea macrophylla HOM05D006332 ORTHO05D008421 3.6e-192 675.2 430 78.4
Sed0003237 Sechium edule HOM05D006332 ORTHO05D008421 3.6e-192 675.2 441 74.6
Duzib160G0593 Durio zibethinus HOM05D006332 ORTHO05D008421 6.1e-192 674.5 436 76.4
Phvul.002G227700 Phaseolus vulgaris HOM05D006332 ORTHO05D008421 1.8e-191 672.9 447 76.7
PGR004G2698 Punica granatum HOM05D006332 ORTHO05D008421 1.8e-191 672.9 443 76.1
Ca_18532_v3 Cicer arietinum L. HOM05D006332 ORTHO05D008421 8.7e-191 670.6 443 75.8
Gorai.010G152800 Gossypium raimondii HOM05D006332 ORTHO05D008421 1.1e-190 670.2 429 78.3
Glyma.13G181100 Glycine max HOM05D006332 ORTHO05D008421 3.3e-190 668.7 439 76.5
COL.COLO4_31500 Corchorus olitorius HOM05D006332 ORTHO05D008421 3.7e-189 665.2 460 74.3
Cc02_g13080 Coffea canephora HOM05D006332 ORTHO05D008421 1.1e-188 663.7 441 76.0
TWI63G1670 Tripterygium wilfordii HOM05D006332 ORTHO05D008421 4.1e-188 661.8 457 73.7
arahy.Tifrunner.gnm1.ann1.5TP18E Arachis hypogaea HOM05D006332 ORTHO05D008421 3.4e-187 658.7 440 75.2
arahy.Tifrunner.gnm1.ann1.I941VF Arachis hypogaea HOM05D006332 ORTHO05D008421 1.3e-186 656.8 435 75.6
Aqoxy1G02544 Aquilegia oxysepala HOM05D006332 ORTHO05D008421 1.7e-186 656.4 444 71.4
TPR.G12057 Trifolium pratense HOM05D006332 ORTHO05D008421 1.7e-186 656.4 442 75.3
Lj4g0020818 Lotus japonicus HOM05D006332 ORTHO05D008421 2.2e-186 656.0 434 76.0
VMungo0251G1219 Vigna mungo HOM05D006332 ORTHO05D008421 6.5e-186 654.4 441 75.1
Glyma.07G195200 Glycine max HOM05D006332 ORTHO05D008421 1.9e-185 652.9 439 75.9
Lalb_Chr16g0383661 Lupinus albus HOM05D006332 ORTHO05D008421 5.5e-185 651.4 442 74.7
PSO063G3883 Papaver somniferum HOM05D006332 ORTHO05D008421 1.2e-184 650.2 444 72.1
PGSC0003DMG400022831 Solanum tuberosum HOM05D006332 ORTHO05D008421 3.6e-184 648.7 447 72.3
Psat7g112800 Pisum sativum HOM05D006332 ORTHO05D008421 4.6e-184 648.3 443 74.0
Gohir.A10G024200 Gossypium hirsutum HOM05D006332 ORTHO05D008421 1.0e-183 647.1 442 72.6
Solyc10g008990.4 Solanum lycopersicum HOM05D006332 ORTHO05D008421 1.4e-183 646.7 451 71.0
Medtr4g088960 Medicago truncatula HOM05D006332 ORTHO05D008421 2.3e-183 646.0 451 73.6
Gorai.011G026200 Gossypium raimondii HOM05D006332 ORTHO05D008421 1.5e-182 643.3 440 72.5
MSTRG.13186 Avicennia marina HOM05D006332 ORTHO05D008421 2.0e-182 642.9 443 73.1
PSO782G1256 Papaver somniferum HOM05D006332 ORTHO05D008421 3.3e-182 642.1 444 71.4
Oeu053924.1 Olea europaea HOM05D006332 ORTHO05D008421 5.7e-182 641.3 439 72.7
HanXRQChr04g0124141 Helianthus annuus HOM05D006332 ORTHO05D008421 1.3e-181 640.2 441 73.7
CSS0022240 Camellia sinensis var. sinensis HOM05D006332 ORTHO05D008421 2.2e-181 639.4 441 74.1
Eucgr.D00641 Eucalyptus grandis HOM05D006332 ORTHO05D008421 1.1e-180 637.1 441 72.3
Gohir.D10G024900 Gossypium hirsutum HOM05D006332 ORTHO05D008421 2.4e-180 636.0 435 72.4
Migut.H01511 Erythranthe guttata HOM05D006332 ORTHO05D008421 5.3e-180 634.8 439 72.4
THA.LOC104817534 Tarenaya hassleriana HOM05D006332 ORTHO05D008421 2.9e-178 629.0 444 71.6
Ciclev10015324m.g Citrus clementina HOM05D006332 ORTHO05D008421 5.5e-177 624.8 448 72.1
Nn6g34413 Nelumbo nucifera HOM05D006332 ORTHO05D008421 4.7e-176 621.7 439 69.2
AT2G47960 Arabidopsis thaliana HOM05D006332 ORTHO05D008421 5.7e-174 614.8 440 70.7
Sabra04G0025000 Salix brachista HOM05D006332 ORTHO05D008421 5.7e-174 614.8 491 66.6
Sp4g29880 Schrenkiella parvula HOM05D006332 ORTHO05D008421 1.3e-173 613.6 451 68.5
AL4G47550 Arabidopsis lyrata HOM05D006332 ORTHO05D008421 4.8e-173 611.7 441 70.1
Thhalv10018568m.g Eutrema salsugineum HOM05D006332 ORTHO05D008421 8.2e-173 610.9 443 69.5
Carub.0004s3069 Capsella rubella HOM05D006332 ORTHO05D008421 2.4e-172 609.4 442 69.9
Peaxi162Scf00530g00823 Petunia axillaris HOM05D006332 ORTHO05D008421 9.1e-172 607.4 443 69.5
ECA236G3091 Erigeron canadensis HOM05D006332 ORTHO05D008421 1.2e-171 607.1 444 69.6
BcaC02g12534 Brassica carinata HOM05D006332 ORTHO05D008421 2.0e-171 606.3 444 69.1
Nitab4.5_0003942g0020 Nicotiana tabacum HOM05D006332 ORTHO05D008421 4.5e-171 605.1 448 69.0
ATR0680G340 Amborella trichopoda HOM05D006332 ORTHO05D008421 3.8e-170 602.1 434 71.0
C04p00010 Brassica napus HOM05D004682 ORTHO05D006197 1.9e-169 599.7 439 69.0
BolC4t21648H Brassica oleracea HOM05D004682 ORTHO05D006197 1.9e-169 599.7 439 69.0
HanXRQChr01g0003951 Helianthus annuus HOM05D006332 ORTHO05D008421 5.5e-169 598.2 431 69.6
A05p00090 Brassica napus HOM05D004682 ORTHO05D006197 7.2e-169 597.8 437 69.8
BraA05t19005Z Brassica rapa HOM05D004682 ORTHO05D006197 7.2e-169 597.8 437 69.8
BcaB02g08727 Brassica carinata HOM05D006332 ORTHO05D008421 1.6e-168 596.7 451 68.7
EL10Ac8g20347 Beta vulgaris HOM05D006332 ORTHO05D008421 1.5e-166 590.1 428 69.4
HPP92_001753 Vanilla planifolia HOM05D006332 ORTHO05D008421 6.3e-165 584.7 452 65.0
CDE08G0172 Ceratophyllum demersum HOM05D006332 ORTHO05D008421 4.1e-164 582.0 434 68.4
AUR62016979 Chenopodium quinoa HOM05D006332 ORTHO05D008421 2.9e-162 575.9 440 67.5
AUR62014792 Chenopodium quinoa HOM05D006332 ORTHO05D008421 1.6e-160 570.1 456 65.6
ECA248G3961 Erigeron canadensis HOM05D006332 ORTHO05D008421 1.6e-160 570.1 433 66.3
Zm00001eb044550 Zea mays HOM05D006332 ORTHO05D008421 1.2e-158 563.9 438 65.5
Nn1g04020 Nelumbo nucifera HOM05D006332 ORTHO05D008421 5.7e-158 561.6 368 75.5
Cfa000416 Carpinus fangiana HOM05D006332 ORTHO05D008421 7.5e-158 561.2 341 81.8
Hma1.2p1_0126F.1_g059220 Hydrangea macrophylla HOM05D006332 ORTHO05D008421 8.3e-157 557.8 450 63.8
Aa31LG1G29380 Aethionema arabicum HOM05D006332 ORTHO05D008421 1.0e-154 550.8 443 64.8
SGA_v2.0_scaffold49G18281 Striga asiatica HOM05D006332 ORTHO05D008421 5.0e-154 548.5 461 62.5
Hma1.2p1_0881F.1_g231960 Hydrangea macrophylla HOM05D006332 ORTHO05D008421 1.1e-153 547.4 345 80.3
CARHR143350 Cardamine hirsuta HOM05D006332 ORTHO05D008421 7.2e-153 544.7 389 71.0
Lsat_1_v5_gn_7_19001 Lactuca sativa HOM05D006332 ORTHO05D008421 1.4e-151 540.4 433 64.7
MBI17_g03748_MAGBIO Magnolia biondii HOM05D006332 ORTHO05D008421 5.7e-150 535.0 433 64.0
DCAR_004087 Daucus carota HOM05D006332 ORTHO05D008421 5.6e-145 518.5 351 72.6
Hund21245 Selenicereus undatus HOM05D006332 ORTHO05D008421 1.0e-138 497.7 436 59.6
Lsat_1_v5_gn_1_127821 Lactuca sativa HOM05D006332 ORTHO05D008421 1.3e-138 497.3 441 59.2
Duzib192G0908 Durio zibethinus HOM05D006332 ORTHO05D008421 6.6e-138 495.0 348 72.7
unitig_8.g3355 Utricularia gibba HOM05D006332 ORTHO05D008421 1.2e-134 484.2 455 57.8
Nitab4.5_0009738g0010 Nicotiana tabacum HOM05D006332 ORTHO05D008421 4.6e-131 472.2 359 66.9
AagrBONN_evm.TU.Sc2ySwM_344.1820 Anthoceros agrestis HOM05D006332 ORTHO05D008421 2.2e-125 453.4 440 52.7
CAN.G413.15 Capsicum annuum HOM05D006332 ORTHO05D008421 4.9e-125 452.2 328 68.9
Sc24g0000810 Simmondsia chinensis HOM05D006332 ORTHO05D008421 6.4e-125 451.8 614 45.0
Mapoly0122s0006 Marchantia polymorpha HOM05D006332 ORTHO05D008421 3.2e-124 449.5 442 51.6
Pp3c1_28670 Physcomitrium patens HOM05D006332 ORTHO05D008421 4.6e-123 445.7 445 51.0
Atru.chr10.1934 Acer truncatum HOM05D006332 ORTHO05D008421 3.0e-122 443.0 289 78.5
SMO364G0571 Selaginella moellendorffii HOM05D006332 ORTHO05D008421 1.5e-118 430.6 438 51.4
CBR_g24248 Chara braunii HOM05D006332 ORTHO05D008421 2.7e-91 340.1 453 42.6
SMO364G0067 Selaginella moellendorffii HOM05D006332 ORTHO05D008421 2.8e-88 330.1 314 52.9
SHI01800 Sapria himalayana HOM05D006332 ORTHO05D008421 1.1e-87 328.2 279 63.8
Gohir.A10G024325 Gossypium hirsutum HOM05D006332 ORTHO05D008421 1.4e-87 327.8 209 77.5
Nitab4.5_0009738g0020 Nicotiana tabacum HOM05D006332 ORTHO05D008421 8.5e-77 292.0 333 48.3
Sopen10g004770 Solanum pennellii HOM05D006332 ORTHO05D008421 2.3e-74 283.9 212 63.7
Gohir.A10G024350 Gossypium hirsutum HOM05D006332 ORTHO05D008421 5.5e-52 209.5 160 63.1
SHI01798 Sapria himalayana HOM05D000002 ORTHO05D000001 8.0e-43 179.1 203 51.2
PRCOL_00003805 Prasinoderma coloniale HOM05D006332 ORTHO05D008421 3.4e-41 173.7 310 35.8
Atru.chr10.1933 Acer truncatum HOM05D006332 ORTHO05D008421 8.3e-40 169.1 119 68.9
Ciclev10009862m.g Citrus clementina HOM05D006332 ORTHO05D008421 2.8e-35 154.1 102 74.5
PSO017G7020 Papaver somniferum HOM05D006332 ORTHO05D000676 3.5e-22 110.5 113 46.0
PSO170G5489 Papaver somniferum HOM05D006332 ORTHO05D008421 5.6e-20 103.2 99 47.5
TPR.G24681 Trifolium pratense HOM05D006332 ORTHO05D001923 4.7e-19 100.1 62 77.4
Nitab4.5_0009738g0030 Nicotiana tabacum HOM05D006332 ORTHO05D008421 8.0e-19 99.4 92 57.6
Os10g0498800 Oryza sativa ssp. japonica HOM05D006332 ORTHO05D008421 1.2e-14 85.5 64 59.4
TPR.G32042 Trifolium pratense HOM05D006332 ORTHO05D034078 8.9e-10 69.3 40 80.0
CDE02G4141 Ceratophyllum demersum HOM05D006332 ORTHO05D008421 1.5e-09 68.6 38 81.6
FAN09G0423 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.5e-09 68.6 63 58.7
FAN09G2993 Fragaria x ananassa HOM05D006332 ORTHO05D210550 2.2e-08 64.7 55 61.8
Cpa.g.sc777.3 Carica papaya HOM05D006332 ORTHO05D034078 8.3e-08 62.8 37 78.4
Cfa022434 Carpinus fangiana HOM05D006332 ORTHO05D121602 2.7e-06 57.8 298 23.2


User provided reference genes

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