Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G043300 Prunus persica HOM05D003782 ORTHO05D004361 0.0e+00 1646.7 898 100.0
MD10G1297100 Malus domestica HOM05D003782 ORTHO05D004361 0.0e+00 1296.2 910 82.2
MD05G1316600 Malus domestica HOM05D003782 ORTHO05D004361 0.0e+00 1293.5 909 82.1
RcHm_v2.0_Chr5g0007891 Rosa chinensis HOM05D003782 ORTHO05D004361 0.0e+00 1186.8 911 76.8
FAN11G2511 Fragaria x ananassa HOM05D003782 ORTHO05D004361 0.0e+00 1167.1 944 73.2
FAN21G1192 Fragaria x ananassa HOM05D003782 ORTHO05D004361 0.0e+00 1162.1 942 72.6
FvH4_3g04800 Fragaria vesca HOM05D003782 ORTHO05D004361 0.0e+00 1161.0 941 73.4
FAN16G0824 Fragaria x ananassa HOM05D003782 ORTHO05D004361 0.0e+00 1147.1 944 72.5
FAN25G2149 Fragaria x ananassa HOM05D003782 ORTHO05D004361 0.0e+00 1139.0 944 72.2
Cfa000411 Carpinus fangiana HOM05D003782 ORTHO05D004361 1.8e-298 1029.2 933 64.1
Haze_06504 Corylus avellana HOM05D003782 ORTHO05D004361 4.7e-294 1014.6 924 64.0
CiPaw.09G056900 Carya illinoinensis HOM05D003782 ORTHO05D004361 2.1e-278 962.6 936 61.5
QL05p039400 Quercus lobata HOM05D003782 ORTHO05D004361 4.4e-276 954.9 943 61.3
CiPaw.10G046700 Carya illinoinensis HOM05D003782 ORTHO05D004361 6.4e-267 924.5 813 64.3
GSVIVG01006449001 Vitis vinifera HOM05D003782 ORTHO05D004361 8.3e-259 897.5 956 57.7
CANSAT35G1194 Cannabis sativa HOM05D003782 ORTHO05D004361 1.7e-256 889.8 943 59.3
Dinv07533 Davidia involucrata HOM05D003782 ORTHO05D004361 2.8e-254 882.5 935 58.3
Manes.17G043000 Manihot esculenta HOM05D003782 ORTHO05D004361 6.2e-254 881.3 943 57.3
Manes.16G025200 Manihot esculenta HOM05D003782 ORTHO05D004361 1.1e-253 880.6 949 57.1
Glyma.13G181800 Glycine max HOM05D003782 ORTHO05D004361 5.8e-252 874.8 937 58.1
Glyma.07G194500 Glycine max HOM05D003782 ORTHO05D004361 2.4e-250 869.4 937 58.3
CsaV3_1G012120 Cucumis sativus L. HOM05D003782 ORTHO05D004361 1.6e-246 856.7 941 55.8
Lj4g0027811 Lotus japonicus HOM05D003782 ORTHO05D004361 6.2e-246 854.7 953 55.4
ClCG03G005890 Citrullus lanatus HOM05D003782 ORTHO05D004361 4.4e-244 848.6 962 55.1
Hma1.2p1_0881F.1_g231940 Hydrangea macrophylla HOM05D003782 ORTHO05D004361 7.6e-244 847.8 944 56.5
Potri.011G049300 Populus trichocarpa HOM05D003782 ORTHO05D004361 1.7e-243 846.7 950 55.7
TPR.G12054 Trifolium pratense HOM05D003782 ORTHO05D004361 1.4e-242 843.6 989 56.5
CSS0005863 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 5.4e-242 841.6 936 55.8
Potri.004G039900 Populus trichocarpa HOM05D003782 ORTHO05D004361 2.3e-240 836.3 962 54.1
Actinidia05612 Actinidia chinensis HOM05D003782 ORTHO05D004361 3.9e-240 835.5 942 55.7
Thecc.06G191300 Theobroma cacao HOM05D003782 ORTHO05D004361 2.1e-238 829.7 954 55.6
Sed0005800 Sechium edule HOM05D003782 ORTHO05D004361 3.6e-238 828.9 977 51.8
Medtr4g089015 Medicago truncatula HOM05D003782 ORTHO05D004361 4.7e-238 828.6 990 55.5
Ciclev10014178m.g Citrus clementina HOM05D003782 ORTHO05D004361 1.1e-237 827.4 955 55.6
Atru.chr10.1947 Acer truncatum HOM05D003782 ORTHO05D004361 1.2e-236 823.9 974 53.7
VMungo0251G3691 Vigna mungo HOM05D003782 ORTHO05D004361 2.0e-236 823.2 929 56.1
arahy.Tifrunner.gnm1.ann1.2GZF7Z Arachis hypogaea HOM05D003782 ORTHO05D004361 2.6e-236 822.8 943 54.5
arahy.Tifrunner.gnm1.ann1.1A97AW Arachis hypogaea HOM05D003782 ORTHO05D004361 3.4e-236 822.4 943 54.4
Sabra11G0033700 Salix brachista HOM05D003782 ORTHO05D004361 3.4e-236 822.4 962 55.2
Phvul.002G226800 Phaseolus vulgaris HOM05D003782 ORTHO05D004361 2.9e-235 819.3 935 55.2
TWI38G1173 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 2.7e-233 812.8 934 55.4
Duzib160G0524 Durio zibethinus HOM05D003782 ORTHO05D004361 6.0e-233 811.6 924 55.2
Lalb_Chr05g0218361 Lupinus albus HOM05D003782 ORTHO05D004361 3.0e-232 809.3 957 54.0
Dinv40534 Davidia involucrata HOM05D003782 ORTHO05D004361 2.5e-231 806.2 758 61.7
CSS0007425 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 1.3e-230 803.9 913 55.2
MBI17_g03751_MAGBIO Magnolia biondii HOM05D003782 ORTHO05D004361 1.2e-228 797.3 942 54.0
TAR624G0538 Trochodendron aralioides HOM05D003782 ORTHO05D003724 2.3e-224 783.1 833 57.4
Gohir.D06G130600 Gossypium hirsutum HOM05D003782 ORTHO05D004361 3.0e-224 782.7 954 53.4
Ca_18527_v3 Cicer arietinum L. HOM05D003782 ORTHO05D004361 1.1e-223 780.8 902 53.7
Psat7g113440 Pisum sativum HOM05D003782 ORTHO05D004361 1.5e-223 780.4 1023 51.5
Nitab4.5_0011233g0010 Nicotiana tabacum HOM05D003782 ORTHO05D004361 1.9e-223 780.0 980 51.7
Gohir.A06G125300 Gossypium hirsutum HOM05D003782 ORTHO05D004361 2.8e-222 776.2 926 53.9
Sopen02g023410 Solanum pennellii HOM05D003782 ORTHO05D004361 8.1e-222 774.6 1003 50.4
MELO3C002586.2 Cucumis melo HOM05D003782 ORTHO05D004361 1.2e-220 770.8 1015 49.9
Lalb_Chr09g0327561 Lupinus albus HOM05D003782 ORTHO05D004361 1.2e-220 770.8 950 52.0
vmacro03847 Vaccinium macrocarpon HOM05D003782 ORTHO05D004361 1.5e-220 770.4 1036 49.9
PGR042G3934 Punica granatum HOM05D003782 ORTHO05D004361 2.0e-220 770.0 951 51.9
Solyc02g078560.4 Solanum lycopersicum HOM05D003782 ORTHO05D004361 1.3e-219 767.3 854 55.4
CAN.G1627.12 Capsicum annuum HOM05D003782 ORTHO05D004361 2.4e-218 763.1 992 50.3
Sc05g0007840 Simmondsia chinensis HOM05D003782 ORTHO05D004361 6.7e-216 755.0 973 50.9
COL.COLO4_31507 Corchorus olitorius HOM05D003782 ORTHO05D004361 1.3e-214 750.7 1030 50.3
Peaxi162Scf00379g00065 Petunia axillaris HOM05D003782 ORTHO05D004361 1.6e-214 750.4 929 52.2
Cc02_g13030 Coffea canephora HOM05D003782 ORTHO05D004361 1.8e-213 746.9 928 50.6
Eucgr.E03352 Eucalyptus grandis HOM05D003782 ORTHO05D004361 1.0e-211 741.1 949 49.2
RhsimUnG0044200 Rhododendron simsii HOM05D003782 ORTHO05D004361 2.2e-211 740.0 1122 45.6
Gohir.A06G209800 Gossypium hirsutum HOM05D003782 ORTHO05D004361 3.2e-210 736.1 928 51.9
Gorai.010G255000 Gossypium raimondii HOM05D003782 ORTHO05D004361 4.6e-209 732.3 928 52.9
Gohir.D06G211200 Gossypium hirsutum HOM05D003782 ORTHO05D004361 7.9e-209 731.5 928 52.9
Aqoxy4G01073 Aquilegia oxysepala HOM05D003782 ORTHO05D004361 1.3e-206 724.2 969 49.1
Lj1C1208G1 Lonicera japonica HOM05D003782 ORTHO05D004361 1.6e-206 723.8 918 53.2
Gorai.010G152400 Gossypium raimondii HOM05D003782 ORTHO05D004361 1.8e-205 720.3 954 50.8
DCAR_008048 Daucus carota HOM05D003782 ORTHO05D004361 2.2e-203 713.4 840 53.0
PSO210G1870 Papaver somniferum HOM05D003782 ORTHO05D004361 1.4e-202 710.7 1006 51.1
MSTRG.14684 Avicennia marina HOM05D003782 ORTHO05D004361 2.5e-202 709.9 789 54.2
arahy.Tifrunner.gnm1.ann1.HPML60 Arachis hypogaea HOM05D003782 ORTHO05D004361 2.3e-200 703.4 877 50.1
Sed0026382 Sechium edule HOM05D003782 ORTHO05D004361 1.1e-199 701.0 930 48.4
CDE02G2556 Ceratophyllum demersum HOM05D003782 ORTHO05D004361 1.5e-199 700.7 949 49.0
Lsat_1_v5_gn_7_19080 Lactuca sativa HOM05D003782 ORTHO05D004361 3.3e-199 699.5 911 51.5
Migut.H01508 Erythranthe guttata HOM05D003782 ORTHO05D004361 9.7e-199 698.0 832 52.2
arahy.Tifrunner.gnm1.ann1.AS4EHM Arachis hypogaea HOM05D003782 ORTHO05D004361 3.7e-198 696.0 879 49.7
PSO832G0898 Papaver somniferum HOM05D003782 ORTHO05D004361 1.3e-195 687.6 1006 50.2
Nitab4.5_0003668g0120 Nicotiana tabacum HOM05D003782 ORTHO05D004361 1.9e-194 683.7 985 47.9
HanXRQChr08g0209481 Helianthus annuus HOM05D003782 ORTHO05D004361 6.1e-193 678.7 941 48.6
HanXRQChr04g0124181 Helianthus annuus HOM05D003782 ORTHO05D004361 2.3e-192 676.8 945 47.6
Lj6g0013812 Lotus japonicus HOM05D003782 ORTHO05D004361 1.7e-190 670.6 784 52.3
AL1G22040 Arabidopsis lyrata HOM05D003782 ORTHO05D004361 9.1e-189 664.8 943 47.2
Sp1g09750 Schrenkiella parvula HOM05D003782 ORTHO05D004361 3.4e-188 662.9 932 47.0
Oeu014694.1 Olea europaea HOM05D003782 ORTHO05D004361 1.3e-187 661.0 874 48.9
CARHR011250 Cardamine hirsuta HOM05D003782 ORTHO05D004361 6.5e-187 658.7 941 46.4
Hund23698 Selenicereus undatus HOM05D003782 ORTHO05D004361 4.2e-186 656.0 912 47.9
EL10Ac8g20337 Beta vulgaris HOM05D003782 ORTHO05D004361 9.4e-186 654.8 968 46.0
Thhalv10006765m.g Eutrema salsugineum HOM05D003782 ORTHO05D004361 2.7e-185 653.3 943 45.7
AUR62014785 Chenopodium quinoa HOM05D003782 ORTHO05D004361 1.0e-184 651.4 885 47.2
Aa31LG1G3850 Aethionema arabicum HOM05D003782 ORTHO05D004361 8.8e-184 648.3 971 46.0
Carub.0001s1062 Capsella rubella HOM05D003782 ORTHO05D004361 1.5e-183 647.5 949 46.6
Sp2g03490 Schrenkiella parvula HOM05D003782 ORTHO05D004361 1.5e-183 647.5 929 46.9
SGA_v2.0_scaffold49G18282 Striga asiatica HOM05D003782 ORTHO05D004361 2.6e-183 646.7 813 49.7
AT1G11060 Arabidopsis thaliana HOM05D003782 ORTHO05D004361 4.4e-183 646.0 947 46.0
BraA06t23977Z Brassica rapa HOM05D003782 ORTHO05D004361 4.8e-182 642.5 934 47.1
SalBow8G2382 Salvia bowleyana HOM05D003782 ORTHO05D004361 4.8e-182 642.5 840 50.6
A06p07760 Brassica napus HOM05D003782 ORTHO05D004361 8.2e-182 641.7 934 47.2
C08p48360 Brassica napus HOM05D003782 ORTHO05D004361 5.3e-181 639.0 927 45.8
BolC8t52375H Brassica oleracea HOM05D003782 ORTHO05D004361 5.3e-181 639.0 927 45.8
C05p09350 Brassica napus HOM05D003782 ORTHO05D004361 1.2e-180 637.9 934 46.6
AUR62016973 Chenopodium quinoa HOM05D003782 ORTHO05D004361 2.0e-180 637.1 832 48.8
Ah.14g089260 Amaranthus hybridus HOM05D003782 ORTHO05D004361 2.2e-179 633.6 967 44.9
BcaC05g24980 Brassica carinata HOM05D003782 ORTHO05D004361 8.5e-179 631.7 824 48.8
SalBow7G0271 Salvia bowleyana HOM05D003782 ORTHO05D004361 5.5e-178 629.0 864 48.1
BraA09t41812Z Brassica rapa HOM05D003782 ORTHO05D004361 1.2e-177 627.9 1000 43.7
SalBow7G0940 Salvia bowleyana HOM05D003782 ORTHO05D004361 1.6e-177 627.5 864 48.0
BolC5t29675H Brassica oleracea HOM05D003782 ORTHO05D004361 4.7e-177 625.9 962 45.2
AL2G15410 Arabidopsis lyrata HOM05D003782 ORTHO05D004361 8.0e-177 625.2 931 46.2
Sabra04G0024600 Salix brachista HOM05D003782 ORTHO05D004361 1.8e-176 624.0 842 49.5
A09p64830 Brassica napus HOM05D003782 ORTHO05D004361 3.7e-174 616.3 1003 43.0
ATR0680G033 Amborella trichopoda HOM05D003782 ORTHO05D004361 4.8e-174 615.9 963 45.4
AT1G61030 Arabidopsis thaliana HOM05D003782 ORTHO05D004361 4.8e-174 615.9 934 44.8
Lalb_Chr20g0122011 Lupinus albus HOM05D003782 ORTHO05D004361 7.7e-172 608.6 772 49.7
Aa31LG2G9560 Aethionema arabicum HOM05D003782 ORTHO05D004361 1.2e-169 601.3 897 45.3
Carub.0002s0417 Capsella rubella HOM05D003782 ORTHO05D004361 2.1e-169 600.5 923 45.0
HPP92_014533 Vanilla planifolia HOM05D003782 ORTHO05D004361 3.6e-169 599.7 951 43.6
BcaC07g41789 Brassica carinata HOM05D003782 ORTHO05D004361 6.3e-166 589.0 950 43.6
CARHR052160 Cardamine hirsuta HOM05D003782 ORTHO05D004361 3.1e-165 586.6 932 43.8
Os10g0497000 Oryza sativa ssp. japonica HOM05D003782 ORTHO05D004361 4.9e-158 562.8 839 44.0
Duzib235G1248 Durio zibethinus HOM05D003782 ORTHO05D004361 1.3e-155 554.7 959 44.4
Ah.09g235740 Amaranthus hybridus HOM05D003782 ORTHO05D004361 2.3e-152 543.9 965 41.0
Zm00001eb220930 Zea mays HOM05D003782 ORTHO05D004361 8.9e-152 542.0 809 44.0
Duzib192G0241 Durio zibethinus HOM05D003782 ORTHO05D004361 2.0e-151 540.8 960 44.1
Migut.M01185 Erythranthe guttata HOM05D003782 ORTHO05D004361 8.1e-129 465.7 767 42.9
unitig_26.g9369 Utricularia gibba HOM05D003782 ORTHO05D004361 2.6e-127 460.7 803 41.2
Mapoly0014s0099 Marchantia polymorpha HOM05D003782 ORTHO05D004361 4.3e-114 416.8 898 37.1
FAN07G0886 Fragaria x ananassa HOM05D003782 ORTHO05D004361 1.8e-112 411.4 284 74.6
Pp3c9_20340 Physcomitrium patens HOM05D003782 ORTHO05D004361 6.7e-107 392.9 979 33.4
Pp3c9_20349 Physcomitrium patens HOM05D003782 ORTHO05D004361 6.7e-107 392.9 979 33.4
Zm00001eb044640 Zea mays HOM05D003782 ORTHO05D004361 2.4e-104 384.4 693 40.0
Cpa.g.sc27.74 Carica papaya HOM05D003782 ORTHO05D004361 1.2e-103 382.1 378 60.1
SMO169G0190 Selaginella moellendorffii HOM05D003782 ORTHO05D004361 6.9e-96 356.3 903 33.1
ECA236G4595 Erigeron canadensis HOM05D003782 ORTHO05D004361 1.4e-93 348.6 559 44.9
Aqoxy6G00197 Aquilegia oxysepala HOM05D003782 ORTHO05D004361 2.8e-89 334.3 369 53.9
Lj6g0001672 Lotus japonicus HOM05D003782 ORTHO05D004361 1.2e-76 292.4 302 57.6
CBR_g19729 Chara braunii HOM05D003782 ORTHO05D004361 9.1e-72 276.2 983 27.7
SHI01818 Sapria himalayana HOM05D003782 ORTHO05D004361 3.2e-69 267.7 481 41.4
CSS0036804 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 5.5e-69 266.9 393 48.3
SEGI_34470 Sequoiadendron giganteum HOM05D003782 ORTHO05D004361 2.2e-65 255.0 256 57.8
Lj6g0027699 Lotus japonicus HOM05D003782 ORTHO05D004361 8.5e-62 243.0 258 52.7
Oeu043706.1 Olea europaea HOM05D003782 ORTHO05D004361 6.1e-60 236.9 420 42.6
Sabra04G0024500 Salix brachista HOM05D003782 ORTHO05D004361 2.0e-50 205.3 139 78.4
FAN28G2813 Fragaria x ananassa HOM05D003782 ORTHO05D004361 2.0e-39 168.7 305 40.3
ECA236G3594 Erigeron canadensis HOM05D003782 ORTHO05D004361 2.3e-38 165.2 230 48.3
TWI12G0412 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 9.5e-37 159.8 184 53.3
Cpa.g.sc27.75 Carica papaya HOM05D003782 ORTHO05D004361 8.9e-35 153.3 464 31.9
TWI12G0828 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 2.2e-33 148.7 162 54.3
BcaC05g24978 Brassica carinata HOM05D003782 ORTHO05D004361 4.9e-33 147.5 209 48.3
SEGI_13110 Sequoiadendron giganteum HOM05D003782 ORTHO05D004361 6.4e-33 147.1 227 41.9
Zm00001eb006190 Zea mays HOM05D003782 ORTHO05D004361 6.6e-30 137.1 165 44.8
arahy.Tifrunner.gnm1.ann1.04J95Q Arachis hypogaea HOM05D003782 ORTHO05D004361 1.6e-28 132.5 168 47.6
arahy.Tifrunner.gnm1.ann1.M5G8HU Arachis hypogaea HOM05D003782 ORTHO05D004361 4.0e-27 127.9 90 72.2
arahy.Tifrunner.gnm1.ann1.S76ADD Arachis hypogaea HOM05D001687 ORTHO05D001608 1.0e-22 113.2 81 71.6
MD09G1213100 Malus domestica HOM05D003782 ORTHO05D004361 1.7e-22 112.5 72 75.0
QL05p013418 Quercus lobata HOM05D003782 ORTHO05D004361 4.7e-20 104.4 57 93.0
VMungo0331G2027 Vigna mungo HOM05D003782 ORTHO05D004361 4.7e-20 104.4 88 67.0
Zm00001eb432110 Zea mays HOM05D003782 ORTHO05D004361 6.2e-20 104.0 89 59.6
VMungo0251G1485 Vigna mungo HOM05D003782 ORTHO05D004361 8.1e-20 103.6 65 80.0
Zm00001eb335960 Zea mays HOM05D003782 ORTHO05D004361 1.4e-19 102.8 127 44.9
arahy.Tifrunner.gnm1.ann1.IMK82Y Arachis hypogaea HOM05D003782 ORTHO05D004361 2.0e-18 99.0 73 69.9
arahy.Tifrunner.gnm1.ann1.R5EEB5 Arachis hypogaea HOM05D003782 ORTHO05D004361 2.6e-18 98.6 62 72.6
Zm00001eb179180 Zea mays HOM05D003782 ORTHO05D004361 2.6e-18 98.6 89 57.3
Nn1g04009 Nelumbo nucifera HOM05D003782 ORTHO05D004361 4.9e-17 94.4 126 46.8
Glyma.04G160500 Glycine max HOM05D003782 ORTHO05D004361 1.6e-15 89.4 123 46.3
CSS0006007 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 3.5e-15 88.2 59 83.1
SHI01816 Sapria himalayana HOM05D005377 ORTHO05D003034 5.1e-14 84.3 103 56.3
TAR626G0244 Trochodendron aralioides HOM05D003782 ORTHO05D004361 2.5e-13 82.0 61 67.2
arahy.Tifrunner.gnm1.ann1.IG0W9M Arachis hypogaea HOM05D003782 ORTHO05D004361 2.8e-12 78.6 95 44.2
Zm00001eb174580 Zea mays HOM05D003782 ORTHO05D004361 1.4e-11 76.3 62 58.1
Zm00001eb208870 Zea mays HOM05D000229 ORTHO05D004361 3.1e-11 75.1 126 40.5
QL11p045598 Quercus lobata HOM05D005703 ORTHO05D006643 8.9e-11 73.6 44 86.4
CARHR034020 Cardamine hirsuta HOM05D003782 ORTHO05D004361 4.9e-09 67.8 88 43.2
CSS0040150 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 9.2e-08 63.5 66 51.5
Zm00001eb032810 Zea mays HOM05D003782 ORTHO05D004361 9.2e-08 63.5 60 51.7
MCO02G174 Micromonas commoda HOM05D003782 ORTHO05D004361 1.2e-07 63.2 307 24.4
CSS0046083 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 1.6e-07 62.8 147 38.8
Zm00001eb274810 Zea mays HOM05D003782 ORTHO05D004361 2.7e-07 62.0 62 51.6
MBI19_g13594_MAGBIO Magnolia biondii HOM05D003782 ORTHO05D004361 2.3e-06 58.9 58 48.3
ATR0561G103 Amborella trichopoda HOM05D003782 ORTHO05D004361 5.1e-06 57.8 177 32.2


User provided reference genes

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