Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G042300 Prunus persica HOM05D006133 ORTHO05D007855 7.9e-39 163.3 83 100.0
arahy.Tifrunner.gnm1.ann1.YAJ938 Arachis hypogaea HOM05D006133 ORTHO05D007855 5.0e-17 90.9 68 73.5
Prupe.4G046300 Prunus persica HOM05D006133 ORTHO05D007855 6.5e-17 90.5 68 79.4
QL05p040164 Quercus lobata HOM05D006133 ORTHO05D007855 1.1e-16 89.7 68 72.1
arahy.Tifrunner.gnm1.ann1.Y5A5WX Arachis hypogaea HOM05D006133 ORTHO05D007855 1.5e-16 89.4 68 72.1
Phvul.002G234200 Phaseolus vulgaris HOM05D006133 ORTHO05D007855 1.9e-16 89.0 68 73.5
Lj4g0021405 Lotus japonicus HOM05D006133 ORTHO05D007855 3.2e-16 88.2 68 70.6
Glyma.13G179800 Glycine max HOM05D006133 ORTHO05D007855 4.2e-16 87.8 68 70.6
Hma1.2p1_0785F.1_g217580 Hydrangea macrophylla HOM05D006133 ORTHO05D007855 4.2e-16 87.8 68 72.1
VMungo0251G0712 Vigna mungo HOM05D006133 ORTHO05D007855 4.2e-16 87.8 68 72.1
Manes.16G026900 Manihot esculenta HOM05D006133 ORTHO05D007855 5.5e-16 87.4 68 70.6
Rhsim13G0177600 Rhododendron simsii HOM05D006133 ORTHO05D007855 5.5e-16 87.4 68 72.1
Thecc.06G188500 Theobroma cacao HOM05D006133 ORTHO05D007855 1.2e-15 86.3 68 72.1
Glyma.07G196100 Glycine max HOM05D006133 ORTHO05D007855 2.1e-15 85.5 68 70.6
Lj1A1206T67 Lonicera japonica HOM05D006133 ORTHO05D007855 2.1e-15 85.5 68 67.6
Actinidia05630 Actinidia chinensis HOM05D006133 ORTHO05D007855 3.6e-15 84.7 68 67.6
Medtr4g088855 Medicago truncatula HOM05D006133 ORTHO05D007855 3.6e-15 84.7 68 69.1
Atru.chr10.1894 Acer truncatum HOM05D006133 ORTHO05D007855 4.7e-15 84.3 68 67.6
Hund23730 Selenicereus undatus HOM05D006133 ORTHO05D007855 4.7e-15 84.3 68 69.1
Hund23731 Selenicereus undatus HOM05D006133 ORTHO05D007855 4.7e-15 84.3 68 69.1
CSS0047692 Camellia sinensis var. sinensis HOM05D006133 ORTHO05D007855 6.1e-15 84.0 68 66.2
CiPaw.09G059200 Carya illinoinensis HOM05D006133 ORTHO05D007855 1.0e-14 83.2 68 67.6
Ca_18541_v3 Cicer arietinum L. HOM05D006133 ORTHO05D007855 1.0e-14 83.2 68 67.6
MELO3C002599.2 Cucumis melo HOM05D006133 ORTHO05D007855 1.0e-14 83.2 68 69.1
CsaV3_1G012270 Cucumis sativus L. HOM05D006133 ORTHO05D007855 1.0e-14 83.2 68 69.1
ClCG03G006010 Citrullus lanatus HOM05D006133 ORTHO05D007855 1.4e-14 82.8 68 69.1
Ciclev10017918m.g Citrus clementina HOM05D006133 ORTHO05D007855 1.4e-14 82.8 68 69.1
Psat7g113640 Pisum sativum HOM05D006133 ORTHO05D007855 1.4e-14 82.8 68 66.2
Migut.M01145 Erythranthe guttata HOM05D006133 ORTHO05D007855 1.8e-14 82.4 68 66.2
Gorai.011G027600 Gossypium raimondii HOM05D006133 ORTHO05D007855 2.3e-14 82.0 68 70.6
Haze_06477 Corylus avellana HOM05D006133 ORTHO05D007855 4.0e-14 81.3 68 67.6
Duzib235G0895 Durio zibethinus HOM05D006133 ORTHO05D007855 4.0e-14 81.3 67 67.2
Cc01_g03530 Coffea canephora HOM05D006133 ORTHO05D007855 5.2e-14 80.9 68 66.2
TWI38G1277 Tripterygium wilfordii HOM05D006133 ORTHO05D007855 6.8e-14 80.5 64 70.3
Cc02_g13300 Coffea canephora HOM05D006133 ORTHO05D007855 1.2e-13 79.7 68 64.7
TPR.G12027 Trifolium pratense HOM05D006133 ORTHO05D007855 1.2e-13 79.7 68 64.7
Sc05g0007700 Simmondsia chinensis HOM05D006133 ORTHO05D007855 1.5e-13 79.3 68 67.6
FvH4_3g09320 Fragaria vesca HOM05D006133 ORTHO05D007855 2.6e-13 78.6 70 64.3
FAN11G1298 Fragaria x ananassa HOM05D006133 ORTHO05D007855 2.6e-13 78.6 70 64.3
FAN16G1924 Fragaria x ananassa HOM05D006133 ORTHO05D007855 2.6e-13 78.6 70 64.3
FAN21G1061 Fragaria x ananassa HOM05D006133 ORTHO05D007855 2.6e-13 78.6 70 64.3
FAN25G2154 Fragaria x ananassa HOM05D006133 ORTHO05D007855 2.6e-13 78.6 70 64.3
Potri.004G042800 Populus trichocarpa HOM05D006133 ORTHO05D007855 2.6e-13 78.6 68 64.7
Cc01_g03500 Coffea canephora HOM05D006133 ORTHO05D007855 4.4e-13 77.8 68 63.2
COL.COLO4_31481 Corchorus olitorius HOM05D006133 ORTHO05D007855 4.4e-13 77.8 68 66.2
DCAR_028075 Daucus carota HOM05D006133 ORTHO05D007855 7.5e-13 77.0 68 64.7
SGA_v2.0_scaffold22G09717 Striga asiatica HOM05D006133 ORTHO05D007855 7.5e-13 77.0 64 65.6
Gohir.A10G025600 Gossypium hirsutum HOM05D006133 ORTHO05D007855 9.8e-13 76.6 68 66.2
AUR62017011 Chenopodium quinoa HOM05D006133 ORTHO05D007855 1.3e-12 76.3 68 63.2
Thhalv10017234m.g Eutrema salsugineum HOM05D006133 ORTHO05D007855 1.3e-12 76.3 69 62.3
CSS0042278 Camellia sinensis var. sinensis HOM05D006133 ORTHO05D007855 1.7e-12 75.9 68 61.8
Cfa000437 Carpinus fangiana HOM05D006133 ORTHO05D007855 1.7e-12 75.9 68 66.2
ECA234G2723 Erigeron canadensis HOM05D006133 ORTHO05D007855 1.7e-12 75.9 68 61.8
unitig_22.g6229 Utricularia gibba HOM05D006133 ORTHO05D007855 1.7e-12 75.9 68 61.8
Oeu057904.1 Olea europaea HOM05D006133 ORTHO05D007855 2.2e-12 75.5 68 61.8
Peaxi162Scf00736g00427 Petunia axillaris HOM05D006133 ORTHO05D007855 2.2e-12 75.5 68 63.2
AUR62014816 Chenopodium quinoa HOM05D006133 ORTHO05D007855 2.8e-12 75.1 68 63.2
EL10Ac8g20377 Beta vulgaris HOM05D006133 ORTHO05D007855 3.7e-12 74.7 68 61.8
RcHm_v2.0_Chr5g0008281 Rosa chinensis HOM05D006133 ORTHO05D007855 3.7e-12 74.7 64 68.8
Sp4g16180 Schrenkiella parvula HOM05D006133 ORTHO05D007855 3.7e-12 74.7 69 60.9
Ah.09g237330 Amaranthus hybridus HOM05D006133 ORTHO05D007855 6.3e-12 73.9 68 61.8
MBI09_g12165_MAGBIO Magnolia biondii HOM05D006133 ORTHO05D007855 1.1e-11 73.2 68 60.3
Carub.0004s1546 Capsella rubella HOM05D006133 ORTHO05D007855 1.4e-11 72.8 69 59.4
Dinv40551 Davidia involucrata HOM05D006133 ORTHO05D007855 1.4e-11 72.8 68 63.2
BcaC02g07769 Brassica carinata HOM05D006133 ORTHO05D007855 1.8e-11 72.4 80 51.2
AT2G33793 Arabidopsis thaliana HOM05D006133 ORTHO05D007855 2.4e-11 72.0 69 59.4
AL4G11580 Arabidopsis lyrata HOM05D006133 ORTHO05D007855 3.1e-11 71.6 69 59.4
CARHR127900 Cardamine hirsuta HOM05D006133 ORTHO05D007855 3.1e-11 71.6 69 56.5
AL4G29540 Arabidopsis lyrata HOM05D006133 ORTHO05D007855 4.1e-11 71.2 69 58.0
THA.LOC104814218 Tarenaya hassleriana HOM05D006133 ORTHO05D007855 5.4e-11 70.9 67 59.7
PSO478G1675 Papaver somniferum HOM05D006133 ORTHO05D007855 1.6e-10 69.3 68 55.9
PSO478G5317 Papaver somniferum HOM05D006133 ORTHO05D007855 1.6e-10 69.3 70 55.7
Nitab4.5_0003432g0010 Nicotiana tabacum HOM05D006133 ORTHO05D007855 2.7e-10 68.6 64 60.9
Nitab4.5_0007940g0050 Nicotiana tabacum HOM05D006133 ORTHO05D007855 2.7e-10 68.6 64 60.9
Cpa.g.sc27.45 Carica papaya HOM05D006133 ORTHO05D007855 7.7e-10 67.0 65 60.0
BcaC02g11457 Brassica carinata HOM05D006133 ORTHO05D007855 1.0e-09 66.6 66 59.1
C04p15330 Brassica napus HOM05D006133 ORTHO05D007855 1.0e-09 66.6 66 59.1
BolC4t23106H Brassica oleracea HOM05D006133 ORTHO05D007855 1.0e-09 66.6 66 59.1
Nn1g08778 Nelumbo nucifera HOM05D006133 ORTHO05D007855 1.3e-09 66.2 64 57.8
TAR628G0719 Trochodendron aralioides HOM05D006133 ORTHO05D007855 1.7e-09 65.9 68 55.9
A04p26010 Brassica napus HOM05D006133 ORTHO05D007855 5.0e-09 64.3 69 53.6
BolC4t27810H Brassica oleracea HOM05D006133 ORTHO05D007855 5.0e-09 64.3 69 53.6
CDE04G1633 Ceratophyllum demersum HOM05D006133 ORTHO05D007855 6.5e-09 63.9 68 52.9
Potri.011G051900 Populus trichocarpa HOM05D006133 ORTHO05D007855 6.5e-09 63.9 51 68.6
ATR0584G083 Amborella trichopoda HOM05D006133 ORTHO05D007855 1.5e-08 62.8 63 60.3
HanXRQChr16g0517711 Helianthus annuus HOM05D006133 ORTHO05D007855 3.2e-08 61.6 51 66.7
Lsat_1_v5_gn_4_52940 Lactuca sativa HOM05D006133 ORTHO05D007855 4.2e-08 61.2 51 62.7
SGA_v2.0_scaffold499G52489 Striga asiatica HOM05D006133 ORTHO05D007855 3.6e-07 58.2 69 47.8
HPP92_006839 Vanilla planifolia HOM05D006133 ORTHO05D007855 8.8e-06 53.5 61 52.5


User provided reference genes

Program Settings