Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G040400 Prunus persica HOM05D007185 ORTHO05D009016 3.4e-52 208.0 101 100.0
MD05G1322400 Malus domestica HOM05D007185 ORTHO05D009016 8.4e-35 150.2 104 75.0
Haze_06539 Corylus avellana HOM05D007185 ORTHO05D009016 5.9e-28 127.5 99 64.6
FvH4_6g14200 Fragaria vesca HOM05D007185 ORTHO05D009016 5.0e-27 124.4 101 66.3
FAN05G3455 Fragaria x ananassa HOM05D007185 ORTHO05D009016 5.0e-27 124.4 101 66.3
FAN14G1513 Fragaria x ananassa HOM05D007185 ORTHO05D009016 5.0e-27 124.4 101 66.3
RcHm_v2.0_Chr5g0007481 Rosa chinensis HOM05D007185 ORTHO05D009016 5.0e-27 124.4 102 68.6
CiPaw.09G053500 Carya illinoinensis HOM05D007185 ORTHO05D009016 1.9e-26 122.5 99 62.6
Cfa000387 Carpinus fangiana HOM05D007185 ORTHO05D009016 2.5e-26 122.1 99 63.6
FAN09G3112 Fragaria x ananassa HOM05D007185 ORTHO05D009016 7.2e-26 120.6 101 64.4
Psat1g206960 Pisum sativum HOM05D007185 ORTHO05D009016 1.2e-25 119.8 99 58.6
FAN21G1120 Fragaria x ananassa HOM05D007185 ORTHO05D009016 4.6e-25 117.9 97 64.9
FAN25G2721 Fragaria x ananassa HOM05D007185 ORTHO05D009016 6.1e-25 117.5 97 64.9
CiPaw.10G045100 Carya illinoinensis HOM05D007185 ORTHO05D009016 7.9e-25 117.1 101 60.4
FAN16G0756 Fragaria x ananassa HOM05D007185 ORTHO05D009016 1.4e-24 116.3 97 63.9
FvH4_3g04560 Fragaria vesca HOM05D007185 ORTHO05D009016 1.1e-23 113.2 97 62.9
FAN11G2592 Fragaria x ananassa HOM05D007185 ORTHO05D009016 1.1e-23 113.2 97 62.9
Manes.16G023500 Manihot esculenta HOM05D007185 ORTHO05D009016 2.0e-23 112.5 97 55.7
Lj6g0018466 Lotus japonicus HOM05D007185 ORTHO05D009016 3.3e-23 111.7 100 57.0
Actinidia05600 Actinidia chinensis HOM05D007185 ORTHO05D009016 4.3e-23 111.3 95 58.9
Thecc.06G194500 Theobroma cacao HOM05D007185 ORTHO05D009016 4.3e-23 111.3 98 57.1
TPR.G36776 Trifolium pratense HOM05D007185 ORTHO05D009016 5.7e-23 110.9 99 54.5
Glyma.15G069900 Glycine max HOM05D007185 ORTHO05D009016 7.4e-23 110.5 95 58.9
Ciclev10017305m.g Citrus clementina HOM05D007185 ORTHO05D009016 9.7e-23 110.2 99 56.6
Phvul.006G189400 Phaseolus vulgaris HOM05D007185 ORTHO05D009016 1.3e-22 109.8 95 60.0
Ca_00300_v3 Cicer arietinum L. HOM05D007185 ORTHO05D009016 2.8e-22 108.6 95 52.6
Manes.17G041400 Manihot esculenta HOM05D007185 ORTHO05D009016 2.8e-22 108.6 97 52.6
ClCG03G005660 Citrullus lanatus HOM05D007185 ORTHO05D009016 3.7e-22 108.2 95 58.9
Medtr2g012800 Medicago truncatula HOM05D007185 ORTHO05D009016 3.7e-22 108.2 101 51.5
Nn1g03963 Nelumbo nucifera HOM05D007185 ORTHO05D009016 1.1e-21 106.7 97 53.6
Glyma.13G243800 Glycine max HOM05D007185 ORTHO05D009016 1.8e-21 105.9 95 54.7
Oeu053961.1 Olea europaea HOM05D007185 ORTHO05D009016 3.1e-21 105.1 96 57.3
COL.COLO4_31534 Corchorus olitorius HOM05D007185 ORTHO05D009016 4.1e-21 104.8 99 56.6
ClCG01G022750 Citrullus lanatus HOM05D007185 ORTHO05D009016 6.9e-21 104.0 100 56.0
Sabra04G0022700 Salix brachista HOM05D007185 ORTHO05D009016 1.2e-20 103.2 98 53.1
MELO3C002569.2 Cucumis melo HOM05D007185 ORTHO05D009016 1.5e-20 102.8 95 61.1
Potri.004G037500 Populus trichocarpa HOM05D007185 ORTHO05D009016 2.6e-20 102.1 96 55.2
arahy.Tifrunner.gnm1.ann1.5HQW77 Arachis hypogaea HOM05D007185 ORTHO05D009016 4.5e-20 101.3 104 52.9
arahy.Tifrunner.gnm1.ann1.D3DKTB Arachis hypogaea HOM05D007185 ORTHO05D009016 5.9e-20 100.9 104 52.9
CsaV3_1G011920 Cucumis sativus L. HOM05D007185 ORTHO05D009016 1.0e-19 100.1 95 58.9
MELO3C007306.2 Cucumis melo HOM05D007185 ORTHO05D009016 1.3e-19 99.8 100 54.0
Lalb_Chr15g0089951 Lupinus albus HOM05D007185 ORTHO05D009016 2.2e-19 99.0 101 53.5
Atru.chr10.1968 Acer truncatum HOM05D007185 ORTHO05D009016 3.8e-19 98.2 103 50.5
Lalb_Chr20g0122101 Lupinus albus HOM05D007185 ORTHO05D009016 1.1e-18 96.7 108 51.9
Gohir.A05G163200 Gossypium hirsutum HOM05D007185 ORTHO05D009016 3.2e-18 95.1 96 54.2
HanXRQChr09g0263951 Helianthus annuus HOM05D007185 ORTHO05D009016 9.4e-18 93.6 109 45.9
Aqoxy4G01278 Aquilegia oxysepala HOM05D007185 ORTHO05D009016 1.2e-17 93.2 96 43.8
Gohir.D05G166000 Gossypium hirsutum HOM05D007185 ORTHO05D009016 2.1e-17 92.4 68 64.7
Gorai.009G171200 Gossypium raimondii HOM05D007185 ORTHO05D009016 2.1e-17 92.4 68 64.7
Aqoxy1G01214 Aquilegia oxysepala HOM05D007185 ORTHO05D009016 7.9e-17 90.5 99 43.4
Lalb_Chr18g0059811 Lupinus albus HOM05D007185 ORTHO05D009016 7.9e-17 90.5 97 51.5
Potri.011G046112 Populus trichocarpa HOM05D007185 ORTHO05D009016 7.9e-17 90.5 99 49.5
Hma1.2p1_0835F.1_g225880 Hydrangea macrophylla HOM05D007185 ORTHO05D009016 1.0e-16 90.1 58 72.4
Sed0006501 Sechium edule HOM05D007185 ORTHO05D009016 1.4e-16 89.7 60 68.3
Gohir.1Z049398 Gossypium hirsutum HOM05D007185 ORTHO05D009016 5.1e-16 87.8 91 54.9
Gohir.D09G071200 Gossypium hirsutum HOM05D007185 ORTHO05D009016 5.1e-16 87.8 91 54.9
Gorai.006G086100 Gossypium raimondii HOM05D007185 ORTHO05D009016 5.1e-16 87.8 91 54.9
Sed0016146 Sechium edule HOM05D007185 ORTHO05D009016 1.1e-15 86.7 92 54.3
Gohir.A09G071400 Gossypium hirsutum HOM05D007185 ORTHO05D009016 1.5e-15 86.3 70 62.9
Gohir.D10G023700 Gossypium hirsutum HOM05D007185 ORTHO05D009016 2.6e-15 85.5 97 43.3
Gorai.011G024800 Gossypium raimondii HOM05D007185 ORTHO05D009016 2.6e-15 85.5 97 43.3
Lsat_1_v5_gn_7_20060 Lactuca sativa HOM05D007185 ORTHO05D009016 4.4e-15 84.7 108 45.4
Sed0025622 Sechium edule HOM05D007185 ORTHO05D009016 7.4e-15 84.0 89 55.1
PGSC0003DMG400005083 Solanum tuberosum HOM05D007185 ORTHO05D009016 1.3e-14 83.2 96 51.0
Cpa.g.sc27.90 Carica papaya HOM05D007185 ORTHO05D009016 2.2e-14 82.4 98 48.0
Sopen03g002590 Solanum pennellii HOM05D007185 ORTHO05D009016 6.3e-14 80.9 96 49.0
EL10Ac8g20292 Beta vulgaris HOM05D007185 ORTHO05D009016 4.1e-13 78.2 65 58.5
Gohir.A10G022900 Gossypium hirsutum HOM05D007185 ORTHO05D009016 5.3e-13 77.8 97 41.2
MBI18_g13206_MAGBIO Magnolia biondii HOM05D007185 ORTHO05D009016 9.1e-13 77.0 98 46.9
Rhsim13G0175900 Rhododendron simsii HOM05D007185 ORTHO05D009016 9.1e-13 77.0 81 51.9
ATR0693G421 Amborella trichopoda HOM05D007185 ORTHO05D009016 2.0e-12 75.9 53 60.4
Sc17g0006400 Simmondsia chinensis HOM05D007185 ORTHO05D009016 2.0e-12 75.9 105 39.0
Migut.H01502 Erythranthe guttata HOM05D007185 ORTHO05D009016 3.8e-11 71.6 60 56.7
PSO210G6717 Papaver somniferum HOM05D007185 ORTHO05D009016 2.5e-10 68.9 83 48.2
unitig_744.g24533 Utricularia gibba HOM05D007185 ORTHO05D009016 2.1e-09 65.9 94 41.5
SGA_v2.0_scaffold22G09753 Striga asiatica HOM05D007185 ORTHO05D009016 3.6e-09 65.1 81 48.1
Sabra11G0031900 Salix brachista HOM05D007185 ORTHO05D009016 4.7e-09 64.7 93 37.6
unitig_21.g20222 Utricularia gibba HOM05D007185 ORTHO05D009016 1.4e-08 63.2 93 37.6
SGA_v2.0_scaffold49G18286 Striga asiatica HOM05D003598 ORTHO05D004198 1.8e-08 62.8 95 36.8
unitig_26.g9366 Utricularia gibba HOM05D007185 ORTHO05D009016 2.3e-08 62.4 58 50.0
Potri.007G000801 Populus trichocarpa HOM05D007185 ORTHO05D009016 1.5e-07 59.7 63 49.2
THA.LOC104819117 Tarenaya hassleriana HOM05D011034 ORTHO05D013144 1.5e-07 59.7 89 44.9
TAR629G0868 Trochodendron aralioides HOM05D007185 ORTHO05D009016 4.4e-07 58.2 46 52.2
Cpa.g.c35461 Carica papaya HOM05D007185 ORTHO05D009016 5.7e-07 57.8 47 51.1
Manes.04G161900 Manihot esculenta HOM05D007185 ORTHO05D009016 1.7e-06 56.2 45 51.1
Nn3g18559 Nelumbo nucifera HOM05D007185 ORTHO05D009016 3.7e-06 55.1 44 52.3


User provided reference genes

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