Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G040000 Prunus persica HOM05D004441 ORTHO05D003109 4.3e-170 601.3 316 100.0
MD10G1300500 Malus domestica HOM05D004441 ORTHO05D003109 6.0e-103 378.3 334 69.5
RcHm_v2.0_Chr5g0007441 Rosa chinensis HOM05D004441 ORTHO05D003109 7.9e-71 271.6 349 56.4
FAN16G1227 Fragaria x ananassa HOM05D004441 ORTHO05D003109 1.0e-62 244.6 331 56.2
FAN25G3261 Fragaria x ananassa HOM05D004441 ORTHO05D003109 3.0e-62 243.0 331 56.5
FvH4_3g04520 Fragaria vesca HOM05D004441 ORTHO05D003109 1.4e-59 234.2 334 55.4
FAN11G1619 Fragaria x ananassa HOM05D004441 ORTHO05D003109 3.8e-57 226.1 334 54.8
FAN21G2327 Fragaria x ananassa HOM05D004441 ORTHO05D003109 1.6e-52 210.7 331 52.9
CsaV3_1G011910 Cucumis sativus L. HOM05D004441 ORTHO05D003109 1.3e-41 174.5 326 42.9
TWI63G0258 Tripterygium wilfordii HOM05D004441 ORTHO05D003109 1.7e-41 174.1 329 44.4
Lj6g0023239 Lotus japonicus HOM05D004441 ORTHO05D003109 5.0e-41 172.6 324 47.8
CiPaw.09G160900 Carya illinoinensis HOM05D004441 ORTHO05D003109 8.5e-41 171.8 330 44.8
ClCG03G005640 Citrullus lanatus HOM05D004441 ORTHO05D003109 8.5e-41 171.8 326 43.6
arahy.Tifrunner.gnm1.ann1.KXRU9A Arachis hypogaea HOM05D004441 ORTHO05D003109 9.4e-40 168.3 326 46.0
Hma1.2p1_0191F.1_g083410 Hydrangea macrophylla HOM05D004441 ORTHO05D003109 9.4e-40 168.3 323 44.6
Hma1.2p1_2209F.1_g317155 Hydrangea macrophylla HOM05D004441 ORTHO05D003109 9.4e-40 168.3 323 44.6
Duzib160G0195 Durio zibethinus HOM05D004441 ORTHO05D003109 3.6e-39 166.4 337 42.7
Gohir.D05G166400 Gossypium hirsutum HOM05D004441 ORTHO05D003109 3.6e-39 166.4 340 42.4
VMungo0540G1643 Vigna mungo HOM05D004441 ORTHO05D003109 4.7e-39 166.0 323 43.3
Gorai.009G171500 Gossypium raimondii HOM05D004441 ORTHO05D003109 1.4e-38 164.5 339 42.5
Thecc.06G194800 Theobroma cacao HOM05D004441 ORTHO05D003109 1.8e-38 164.1 340 41.8
Gohir.A05G163400 Gossypium hirsutum HOM05D004441 ORTHO05D003109 2.6e-37 160.2 339 42.5
TWI38G0459 Tripterygium wilfordii HOM05D004441 ORTHO05D003109 3.3e-37 159.8 330 43.9
COL.COLO4_31538 Corchorus olitorius HOM05D004441 ORTHO05D003109 1.3e-36 157.9 345 39.7
Dinv40519 Davidia involucrata HOM05D004441 ORTHO05D003109 1.3e-36 157.9 320 45.9
Phvul.006G189700 Phaseolus vulgaris HOM05D004441 ORTHO05D003109 2.2e-36 157.1 322 44.4
Glyma.13G244100 Glycine max HOM05D004441 ORTHO05D003109 4.8e-36 156.0 324 43.8
Ca_00297_v3 Cicer arietinum L. HOM05D004441 ORTHO05D003109 2.4e-35 153.7 320 42.2
Manes.17G041200 Manihot esculenta HOM05D004441 ORTHO05D003109 2.4e-35 153.7 344 42.4
Potri.011G045700 Populus trichocarpa HOM05D004441 ORTHO05D003109 2.4e-35 153.7 346 42.8
TPR.G36719 Trifolium pratense HOM05D004441 ORTHO05D003109 4.1e-35 152.9 327 42.2
TAR629G3100 Trochodendron aralioides HOM05D004441 ORTHO05D003109 4.1e-35 152.9 340 43.8
Duzib192G0975 Durio zibethinus HOM05D004441 ORTHO05D003109 2.6e-34 150.2 341 41.3
Sed0013174 Sechium edule HOM05D004441 ORTHO05D003109 4.5e-34 149.4 279 43.4
Sabra11G0031800 Salix brachista HOM05D004441 ORTHO05D003109 1.0e-33 148.3 346 43.6
Potri.004G037100 Populus trichocarpa HOM05D004441 ORTHO05D003109 2.2e-33 147.1 348 40.8
Medtr2g012750 Medicago truncatula HOM05D004441 ORTHO05D003109 6.5e-33 145.6 323 40.6
Glyma.15G069600 Glycine max HOM05D004441 ORTHO05D003109 9.4e-32 141.7 321 39.9
TAR626G0020 Trochodendron aralioides HOM05D004441 ORTHO05D003109 2.1e-31 140.6 280 45.4
Lj1A1210T53 Lonicera japonica HOM05D004441 ORTHO05D003109 1.0e-30 138.3 334 40.4
arahy.Tifrunner.gnm1.ann1.W0S7NR Arachis hypogaea HOM05D004441 ORTHO05D003109 1.4e-30 137.9 203 52.2
Psat1g207120 Pisum sativum HOM05D004441 ORTHO05D003109 1.8e-30 137.5 320 39.1
Sc17g0006420 Simmondsia chinensis HOM05D004441 ORTHO05D003109 6.7e-30 135.6 344 39.8
Manes.16G023200 Manihot esculenta HOM05D004441 ORTHO05D003109 2.6e-29 133.7 350 40.9
Atru.chr10.1971 Acer truncatum HOM05D004441 ORTHO05D003109 4.4e-29 132.9 333 37.2
Lalb_Chr15g0089961 Lupinus albus HOM05D004441 ORTHO05D003109 4.4e-29 132.9 322 42.2
Haze_06542 Corylus avellana HOM05D004441 ORTHO05D003109 7.4e-29 132.1 336 36.3
Cfa000385 Carpinus fangiana HOM05D004441 ORTHO05D003109 1.3e-28 131.3 332 38.0
Gorai.010G150800 Gossypium raimondii HOM05D004441 ORTHO05D003109 1.4e-27 127.9 334 39.5
Gohir.A06G124300 Gossypium hirsutum HOM05D004441 ORTHO05D003109 1.8e-27 127.5 334 39.5
Gohir.D06G129200 Gossypium hirsutum HOM05D004441 ORTHO05D003109 1.8e-27 127.5 334 39.5
PSO675G8062 Papaver somniferum HOM05D004441 ORTHO05D003109 9.1e-27 125.2 351 39.0
Sabra04G0022600 Salix brachista HOM05D004441 ORTHO05D003109 2.0e-26 124.0 344 39.0
TAR627G0319 Trochodendron aralioides HOM05D004441 ORTHO05D003109 1.7e-25 120.9 265 42.3
Dinv39787 Davidia involucrata HOM05D004441 ORTHO05D003109 3.8e-25 119.8 324 40.7
Rhsim13G0175700 Rhododendron simsii HOM05D004441 ORTHO05D003109 3.8e-25 119.8 334 39.2
Ciclev10015894m.g Citrus clementina HOM05D004441 ORTHO05D003109 9.4e-24 115.2 361 35.2
Cc00_g11510 Coffea canephora HOM05D004441 ORTHO05D003109 9.4e-24 115.2 338 38.2
MELO3C007307.2 Cucumis melo HOM05D004441 ORTHO05D003109 9.4e-24 115.2 326 35.6
CsaV3_6G049880 Cucumis sativus L. HOM05D004441 ORTHO05D003109 9.4e-24 115.2 326 36.5
PSO541G1557 Papaver somniferum HOM05D004441 ORTHO05D003109 1.2e-23 114.8 359 35.7
PGR004G2153 Punica granatum HOM05D004441 ORTHO05D003109 2.7e-23 113.6 355 37.2
SalBow8G3623 Salvia bowleyana HOM05D004441 ORTHO05D003109 3.6e-23 113.2 329 35.6
SalBow8G4382 Salvia bowleyana HOM05D004441 ORTHO05D003109 3.6e-23 113.2 329 35.6
ClCG00G003130 Citrullus lanatus HOM05D004441 ORTHO05D003109 4.7e-23 112.8 321 35.8
ClCG01G022730 Citrullus lanatus HOM05D004441 ORTHO05D003109 4.7e-23 112.8 321 35.8
Aqoxy1G02647 Aquilegia oxysepala HOM05D004441 ORTHO05D003109 8.0e-23 112.1 338 37.6
Sed0025630 Sechium edule HOM05D004441 ORTHO05D003109 1.4e-22 111.3 274 38.3
Actinidia05598 Actinidia chinensis HOM05D004441 ORTHO05D003109 5.2e-22 109.4 247 42.1
Phvul.002G224300 Phaseolus vulgaris HOM05D004441 ORTHO05D003109 8.8e-22 108.6 324 34.9
Lalb_Chr20g0122111 Lupinus albus HOM05D004441 ORTHO05D003109 1.5e-21 107.8 330 36.1
VMungo0251G2507 Vigna mungo HOM05D004441 ORTHO05D003109 3.4e-21 106.7 321 32.7
DCAR_004123 Daucus carota HOM05D004441 ORTHO05D003109 4.4e-21 106.3 296 42.6
Glyma.13G184100 Glycine max HOM05D004441 ORTHO05D003109 4.4e-21 106.3 320 36.2
Cpa.g.sc27.93 Carica papaya HOM05D004441 ORTHO05D003109 7.5e-21 105.5 333 34.8
Aqoxy4G01294 Aquilegia oxysepala HOM05D004441 ORTHO05D003109 1.3e-20 104.8 276 40.9
Nitab4.5_0001820g0050 Nicotiana tabacum HOM05D004441 ORTHO05D003109 2.8e-20 103.6 308 37.0
CSS0013822 Camellia sinensis var. sinensis HOM05D009304 ORTHO05D003109 4.8e-20 102.8 320 37.5
Nitab4.5_0007319g0010 Nicotiana tabacum HOM05D004441 ORTHO05D003109 4.8e-20 102.8 300 37.3
Dinv23691 Davidia involucrata HOM05D009304 ORTHO05D003109 1.4e-19 101.3 293 37.5
Lsat_1_v5_gn_4_55461 Lactuca sativa HOM05D004441 ORTHO05D003109 1.8e-19 100.9 334 35.9
Lj1A733T64 Lonicera japonica HOM05D009304 ORTHO05D003109 3.1e-19 100.1 336 38.1
Lsat_1_v5_gn_7_20000 Lactuca sativa HOM05D004441 ORTHO05D003109 1.6e-18 97.8 328 34.8
Psat0s2678g0120 Pisum sativum HOM05D004441 ORTHO05D003109 2.0e-18 97.4 319 35.4
CSS0028025 Camellia sinensis var. sinensis HOM05D009304 ORTHO05D003109 2.7e-18 97.1 320 36.9
Nn1g06687 Nelumbo nucifera HOM05D004441 ORTHO05D003109 3.5e-18 96.7 333 34.2
Cc05_g06660 Coffea canephora HOM05D009304 ORTHO05D003109 1.0e-17 95.1 337 36.5
Eucgr.A01789 Eucalyptus grandis HOM05D004441 ORTHO05D003109 2.2e-17 94.0 343 34.1
ECA234G2831 Erigeron canadensis HOM05D004441 ORTHO05D003109 2.9e-17 93.6 329 36.2
MBI18_g13205_MAGBIO Magnolia biondii HOM05D004441 ORTHO05D003109 6.5e-17 92.4 332 36.1
Hma1.2p1_0835F.1_g225850 Hydrangea macrophylla HOM05D004441 ORTHO05D003109 1.2e-15 88.2 320 33.8
Hma1.2p1_0835F.1_g225855 Hydrangea macrophylla HOM05D004441 ORTHO05D003109 1.2e-15 88.2 320 33.8
Migut.M01162 Erythranthe guttata HOM05D004441 ORTHO05D003109 2.1e-15 87.4 332 32.8
Solyc07g054560.1 Solanum lycopersicum HOM05D009304 ORTHO05D003109 2.1e-15 87.4 329 36.2
Eucgr.D00694 Eucalyptus grandis HOM05D004441 ORTHO05D003109 6.1e-15 85.9 340 32.9
Oeu026007.1 Olea europaea HOM05D004441 ORTHO05D003109 8.0e-15 85.5 336 35.1
QL08p037640 Quercus lobata HOM05D010652 ORTHO05D003109 8.0e-15 85.5 340 35.3
Nitab4.5_0003018g0090 Nicotiana tabacum HOM05D009304 ORTHO05D003109 1.0e-14 85.1 336 36.3
arahy.Tifrunner.gnm1.ann1.7X1CID Arachis hypogaea HOM05D010177 ORTHO05D003109 1.8e-14 84.3 356 34.6
Manes.13G149800 Manihot esculenta HOM05D010652 ORTHO05D003109 1.8e-14 84.3 326 31.6
Sopen07g028460 Solanum pennellii HOM05D009304 ORTHO05D003109 1.8e-14 84.3 324 34.0
PGSC0003DMG400018324 Solanum tuberosum HOM05D009304 ORTHO05D003109 1.8e-14 84.3 326 34.0
Actinidia11074 Actinidia chinensis HOM05D002331 ORTHO05D003109 4.0e-14 83.2 275 34.9
Lalb_Chr18g0059831 Lupinus albus HOM05D004441 ORTHO05D003109 6.8e-14 82.4 324 36.7
Nn1g03959 Nelumbo nucifera HOM05D004441 ORTHO05D003109 6.8e-14 82.4 178 39.9
Haze_13109 Corylus avellana HOM05D010652 ORTHO05D003109 1.2e-13 81.6 317 33.4
Lj3g0011122 Lotus japonicus HOM05D010177 ORTHO05D003109 2.0e-13 80.9 348 34.8
Medtr4g089190 Medicago truncatula HOM05D004441 ORTHO05D003109 2.0e-13 80.9 321 34.3
Sed0024673 Sechium edule HOM05D004441 ORTHO05D003109 3.4e-13 80.1 228 36.4
BraA06t23983Z Brassica rapa HOM05D004441 ORTHO05D003109 5.7e-13 79.3 329 34.7
PGR042G3342 Punica granatum HOM05D004441 ORTHO05D003109 9.8e-13 78.6 323 32.5
Cpa.g.sc34.119 Carica papaya HOM05D004441 ORTHO05D003109 1.3e-12 78.2 342 34.5
Dinv01395 Davidia involucrata HOM05D009304 ORTHO05D003109 1.3e-12 78.2 284 34.2
BraA01t03127Z Brassica rapa HOM05D004441 ORTHO05D003109 2.2e-12 77.4 329 32.5
THA.LOC104809557 Tarenaya hassleriana HOM05D004441 ORTHO05D003109 2.2e-12 77.4 349 33.8
FvH4_6g44980 Fragaria vesca HOM05D010652 ORTHO05D003109 2.8e-12 77.0 362 32.6
Psat7g199680 Pisum sativum HOM05D010177 ORTHO05D003109 2.8e-12 77.0 343 32.9
BcaC09g49327 Brassica carinata HOM05D004441 ORTHO05D003109 4.9e-12 76.3 329 32.2
C01p37890 Brassica napus HOM05D004441 ORTHO05D003109 4.9e-12 76.3 329 32.2
BolC1t03749H Brassica oleracea HOM05D004441 ORTHO05D003109 4.9e-12 76.3 329 32.2
CDE04G0293 Ceratophyllum demersum HOM05D004919 ORTHO05D005994 4.9e-12 76.3 249 35.3
Hma1.2p1_0875F.1_g231510 Hydrangea macrophylla HOM05D009304 ORTHO05D003109 4.9e-12 76.3 327 35.5
Lj4g0026214 Lotus japonicus HOM05D004441 ORTHO05D003109 4.9e-12 76.3 329 31.6
A06p07830 Brassica napus HOM05D004441 ORTHO05D003109 6.3e-12 75.9 327 35.2
DCAR_009737 Daucus carota HOM05D009304 ORTHO05D003109 8.3e-12 75.5 283 34.3
Oeu029188.1 Olea europaea HOM05D004441 ORTHO05D003109 8.3e-12 75.5 322 36.0
AL1G22120 Arabidopsis lyrata HOM05D004441 ORTHO05D003109 1.1e-11 75.1 206 36.9
Nitab4.5_0002370g0010 Nicotiana tabacum HOM05D009304 ORTHO05D003109 1.4e-11 74.7 285 35.1
Solyc02g078760.1 Solanum lycopersicum HOM05D004441 ORTHO05D003109 1.4e-11 74.7 325 33.2
Ah.09g235850 Amaranthus hybridus HOM05D004441 ORTHO05D003109 1.8e-11 74.3 327 33.0
Sopen02g023590 Solanum pennellii HOM05D004441 ORTHO05D003109 1.8e-11 74.3 278 35.3
CiPaw.03G171700 Carya illinoinensis HOM05D004441 ORTHO05D003109 3.1e-11 73.6 326 32.8
Glyma.07G192300 Glycine max HOM05D004441 ORTHO05D003109 3.1e-11 73.6 315 31.4
C05p09410 Brassica napus HOM05D004441 ORTHO05D003109 5.4e-11 72.8 214 39.3
Sed0005410 Sechium edule HOM05D002331 ORTHO05D002624 5.4e-11 72.8 297 32.7
A01p29970 Brassica napus HOM05D004441 ORTHO05D003109 7.0e-11 72.4 329 31.6
PGSC0003DMG400022372 Solanum tuberosum HOM05D004441 ORTHO05D003109 7.0e-11 72.4 280 36.4
BolC5t29682H Brassica oleracea HOM05D004441 ORTHO05D003109 1.2e-10 71.6 214 38.8
Peaxi162Scf00007g00287 Petunia axillaris HOM05D009304 ORTHO05D003109 1.6e-10 71.2 282 37.6
Peaxi162Scf00612g00043 Petunia axillaris HOM05D004441 ORTHO05D003109 2.0e-10 70.9 154 40.3
Carub.0002s0400 Capsella rubella HOM05D004441 ORTHO05D003109 3.5e-10 70.1 299 32.8
SGA_v2.0_scaffold100G29660 Striga asiatica HOM05D004441 ORTHO05D003109 3.5e-10 70.1 311 32.5
PGR042G0321 Punica granatum HOM05D004441 ORTHO05D003109 4.5e-10 69.7 342 32.2
CANSAT64G2194 Cannabis sativa HOM05D010652 ORTHO05D003109 7.7e-10 68.9 343 31.8
BcaB04g20321 Brassica carinata HOM05D004441 ORTHO05D003109 1.3e-09 68.2 326 32.2
Sp1g09810 Schrenkiella parvula HOM05D004441 ORTHO05D003109 1.7e-09 67.8 332 32.5
Lalb_Chr19g0135401 Lupinus albus HOM05D010177 ORTHO05D003109 2.9e-09 67.0 345 32.2
AT1G11125 Arabidopsis thaliana HOM05D004441 ORTHO05D003109 5.0e-09 66.2 237 35.4
AT1G61170 Arabidopsis thaliana HOM05D004441 ORTHO05D003109 5.0e-09 66.2 297 33.0
Aa31LG2G9430 Aethionema arabicum HOM05D004441 ORTHO05D003109 6.6e-09 65.9 292 32.9
Cfa014564 Carpinus fangiana HOM05D010652 ORTHO05D003109 6.6e-09 65.9 321 30.5
Sabra05G0071200 Salix brachista HOM05D010652 ORTHO05D003109 6.6e-09 65.9 328 29.9
Thhalv10023654m.g Eutrema salsugineum HOM05D004441 ORTHO05D003109 8.6e-09 65.5 240 35.8
AL2G15180 Arabidopsis lyrata HOM05D004441 ORTHO05D003109 1.1e-08 65.1 299 33.1
Sp2g03290 Schrenkiella parvula HOM05D004441 ORTHO05D003109 1.1e-08 65.1 323 31.6
Actinidia09882 Actinidia chinensis HOM05D009304 ORTHO05D003109 1.5e-08 64.7 288 31.2
Lj3g0005406 Lotus japonicus HOM05D010177 ORTHO05D003109 1.5e-08 64.7 331 30.8
ECA236G4168 Erigeron canadensis HOM05D004441 ORTHO05D003109 3.3e-08 63.5 331 33.5
Psat5g270560 Pisum sativum HOM05D010177 ORTHO05D003109 3.3e-08 63.5 340 33.2
Nitab4.5_0001833g0010 Nicotiana tabacum HOM05D021131 ORTHO05D022971 7.2e-08 62.4 100 45.0
Sed0017971 Sechium edule HOM05D002331 ORTHO05D002624 9.5e-08 62.0 295 32.5
Hma1.2p1_0280F.1_g112760 Hydrangea macrophylla HOM05D009304 ORTHO05D003109 1.2e-07 61.6 199 36.7
Manes.12G087900 Manihot esculenta HOM05D010652 ORTHO05D003109 2.1e-07 60.8 332 30.1
FAN14G1127 Fragaria x ananassa HOM05D010652 ORTHO05D003109 2.8e-07 60.5 359 29.5
Nitab4.5_0008104g0020 Nicotiana tabacum HOM05D021131 ORTHO05D022971 2.8e-07 60.5 100 44.0
BcaC02g10584 Brassica carinata HOM05D004441 ORTHO05D003109 3.6e-07 60.1 327 31.5
C04p27200 Brassica napus HOM05D004441 ORTHO05D003109 3.6e-07 60.1 327 31.5
BolC4t24251H Brassica oleracea HOM05D004441 ORTHO05D003109 3.6e-07 60.1 327 31.5
arahy.Tifrunner.gnm1.ann1.48X98F Arachis hypogaea HOM05D010177 ORTHO05D003109 4.7e-07 59.7 344 30.8
arahy.Tifrunner.gnm1.ann1.R48FJM Arachis hypogaea HOM05D004441 ORTHO05D003109 4.7e-07 59.7 85 50.6
Lalb_Chr14g0366711 Lupinus albus HOM05D010177 ORTHO05D003109 6.1e-07 59.3 331 28.4
A03p66730 Brassica napus HOM05D004441 ORTHO05D003109 8.0e-07 58.9 332 31.0
BraA01t02809Z Brassica rapa HOM05D004441 ORTHO05D003109 8.0e-07 58.9 332 31.0
PGSC0003DMG400005055 Solanum tuberosum HOM05D021131 ORTHO05D022971 8.0e-07 58.9 102 43.1
CAN.G996.13 Capsicum annuum HOM05D009304 ORTHO05D003109 1.0e-06 58.5 203 32.0
Carub.0001s1070 Capsella rubella HOM05D004441 ORTHO05D003109 1.4e-06 58.2 239 33.1
Lsat_1_v5_gn_4_70241 Lactuca sativa HOM05D009304 ORTHO05D003109 1.4e-06 58.2 336 29.8
Oeu025512.1 Olea europaea HOM05D009304 ORTHO05D003109 1.4e-06 58.2 326 29.8
Ca_20682_v3 Cicer arietinum L. HOM05D010177 ORTHO05D003109 1.8e-06 57.8 336 30.4
Solyc03g006600.1 Solanum lycopersicum HOM05D021131 ORTHO05D022971 1.8e-06 57.8 102 42.2
VMungo1080G0072 Vigna mungo HOM05D010177 ORTHO05D003109 1.8e-06 57.8 327 30.3
FAN09G1981 Fragaria x ananassa HOM05D010652 ORTHO05D003109 3.0e-06 57.0 359 28.4
Solyc08g068460.1 Solanum lycopersicum HOM05D009304 ORTHO05D003109 3.0e-06 57.0 290 31.7
Sopen03g002610 Solanum pennellii HOM05D021131 ORTHO05D022971 3.0e-06 57.0 111 41.4


User provided reference genes

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