Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G038000 Prunus persica HOM05D006134 ORTHO05D007671 1.5e-58 229.2 104 100.0
Glyma.11G156931 Glycine max HOM05D006134 ORTHO05D007671 1.2e-28 129.8 108 61.1
Psat5g110600 Pisum sativum HOM05D006134 ORTHO05D007671 2.1e-28 129.0 108 61.1
Atru.chr9.1880 Acer truncatum HOM05D006134 ORTHO05D007671 2.7e-28 128.6 108 61.1
Ciclev10029589m.g Citrus clementina HOM05D006134 ORTHO05D007671 2.7e-28 128.6 108 61.1
VMungo1080G1627 Vigna mungo HOM05D006134 ORTHO05D007671 2.7e-28 128.6 108 60.2
CSS0024749 Camellia sinensis var. sinensis HOM05D006134 ORTHO05D007671 3.5e-28 128.3 108 62.0
CSS0037732 Camellia sinensis var. sinensis HOM05D006134 ORTHO05D007671 3.5e-28 128.3 108 62.0
Dinv21074 Davidia involucrata HOM05D006134 ORTHO05D007671 4.6e-28 127.9 108 62.0
MD12G1003500 Malus domestica HOM05D006134 ORTHO05D007671 6.0e-28 127.5 108 62.0
Lj6g0003235 Lotus japonicus HOM05D006134 ORTHO05D007671 1.3e-27 126.3 108 60.2
Cpa.g.sc182.12 Carica papaya HOM05D006134 ORTHO05D007671 2.3e-27 125.6 108 60.2
Ca_17958_v3 Cicer arietinum L. HOM05D006134 ORTHO05D007671 2.3e-27 125.6 108 60.2
Medtr3g082190 Medicago truncatula HOM05D006134 ORTHO05D007671 2.3e-27 125.6 108 60.2
arahy.Tifrunner.gnm1.ann1.A6PCA1 Arachis hypogaea HOM05D006134 ORTHO05D007671 3.0e-27 125.2 108 59.3
CSS0027024 Camellia sinensis var. sinensis HOM05D006134 ORTHO05D007671 3.0e-27 125.2 108 60.2
Lalb_Chr10g0093471 Lupinus albus HOM05D006134 ORTHO05D007671 3.0e-27 125.2 108 59.3
Lalb_Chr10g0093491 Lupinus albus HOM05D006134 ORTHO05D007671 3.0e-27 125.2 108 59.3
Manes.11G097800 Manihot esculenta HOM05D006134 ORTHO05D007671 3.0e-27 125.2 108 60.2
Haze_00699 Corylus avellana HOM05D006134 ORTHO05D007671 6.7e-27 124.0 108 60.2
FAN04G0013 Fragaria x ananassa HOM05D006134 ORTHO05D007671 6.7e-27 124.0 105 61.9
FAN08G0898 Fragaria x ananassa HOM05D006134 ORTHO05D007671 6.7e-27 124.0 105 61.9
FAN13G0082 Fragaria x ananassa HOM05D006134 ORTHO05D007671 6.7e-27 124.0 105 61.0
CANSAT80G1040 Cannabis sativa HOM05D006134 ORTHO05D007671 8.7e-27 123.6 108 59.3
CiPaw.10G137600 Carya illinoinensis HOM05D006134 ORTHO05D007671 8.7e-27 123.6 107 58.9
QL11p052022 Quercus lobata HOM05D006134 ORTHO05D007671 1.1e-26 123.2 107 58.9
QL11p052248 Quercus lobata HOM05D006134 ORTHO05D007671 1.1e-26 123.2 107 58.9
MELO3C008634.2 Cucumis melo HOM05D006134 ORTHO05D007671 1.9e-26 122.5 108 58.3
CsaV3_2G009990 Cucumis sativus L. HOM05D006134 ORTHO05D007671 1.9e-26 122.5 108 58.3
Phvul.005G034200 Phaseolus vulgaris HOM05D006134 ORTHO05D007671 1.9e-26 122.5 108 56.5
AUR62013003 Chenopodium quinoa HOM05D006134 ORTHO05D007671 2.5e-26 122.1 108 59.3
FvH4_5g23580 Fragaria vesca HOM05D006134 ORTHO05D007671 2.5e-26 122.1 105 61.0
FAN18G0426 Fragaria x ananassa HOM05D006134 ORTHO05D007671 2.5e-26 122.1 105 61.0
FAN18G3769 Fragaria x ananassa HOM05D006134 ORTHO05D007671 2.5e-26 122.1 105 61.0
RcHm_v2.0_Chr7g0212881 Rosa chinensis HOM05D006134 ORTHO05D007671 2.5e-26 122.1 105 61.0
Hund14365 Selenicereus undatus HOM05D006134 ORTHO05D007671 2.5e-26 122.1 107 58.9
arahy.Tifrunner.gnm1.ann1.PD8D7M Arachis hypogaea HOM05D006134 ORTHO05D007671 4.3e-26 121.3 108 58.3
DCAR_025267 Daucus carota HOM05D006444 ORTHO05D007748 9.6e-26 120.2 108 58.3
SGA_v2.0_scaffold80G25864 Striga asiatica HOM05D006134 ORTHO05D007671 9.6e-26 120.2 105 59.0
Cc02_g30030 Coffea canephora HOM05D006134 ORTHO05D007671 1.3e-25 119.8 108 58.3
AUR62021421 Chenopodium quinoa HOM05D006134 ORTHO05D007671 2.1e-25 119.0 108 57.4
HanXRQChr12g0383651 Helianthus annuus HOM05D006134 ORTHO05D007671 2.1e-25 119.0 108 57.4
SGA_v2.0_scaffold207G41895 Striga asiatica HOM05D006134 ORTHO05D007671 3.7e-25 118.2 105 59.0
EL10Ac9g21342 Beta vulgaris HOM05D006134 ORTHO05D007671 6.2e-25 117.5 108 57.4
AUR62015152 Chenopodium quinoa HOM05D006134 ORTHO05D007671 6.2e-25 117.5 108 57.4
Nitab4.5_0000890g0130 Nicotiana tabacum HOM05D006134 ORTHO05D007671 6.2e-25 117.5 112 54.5
Sed0025018 Sechium edule HOM05D006134 ORTHO05D007671 6.2e-25 117.5 108 55.6
TAR376G1190 Trochodendron aralioides HOM05D006134 ORTHO05D007671 1.4e-24 116.3 108 56.5
AUR62010013 Chenopodium quinoa HOM05D006134 ORTHO05D007671 1.8e-24 115.9 108 56.5
Peaxi162Scf00359g00813 Petunia axillaris HOM05D006134 ORTHO05D007671 1.8e-24 115.9 108 55.6
TAR628G0583 Trochodendron aralioides HOM05D006134 ORTHO05D007671 3.1e-24 115.2 108 55.6
GSVIVG01023976001 Vitis vinifera HOM05D006134 ORTHO05D007671 3.1e-24 115.2 108 56.5
ECA247G3382 Erigeron canadensis HOM05D006134 ORTHO05D007671 4.1e-24 114.8 108 56.5
SalBow3G4511 Salvia bowleyana HOM05D006134 ORTHO05D007671 6.9e-24 114.0 105 57.1
COL.COLO4_32379 Corchorus olitorius HOM05D006134 ORTHO05D007671 9.0e-24 113.6 105 57.1
Lsat_1_v5_gn_1_25060 Lactuca sativa HOM05D006134 ORTHO05D007671 9.0e-24 113.6 107 56.1
Ah.01g023220 Amaranthus hybridus HOM05D006134 ORTHO05D007671 1.5e-23 112.8 107 55.1
Solyc06g007480.3 Solanum lycopersicum HOM05D006134 ORTHO05D007671 1.5e-23 112.8 108 54.6
Nn6g31911 Nelumbo nucifera HOM05D006134 ORTHO05D007671 2.0e-23 112.5 108 54.6
Rhsim11G0193500 Rhododendron simsii HOM05D006134 ORTHO05D007671 2.0e-23 112.5 136 50.7
CAN.G181.11 Capsicum annuum HOM05D006134 ORTHO05D007671 2.6e-23 112.1 108 54.6
Oeu055649.1 Olea europaea HOM05D006134 ORTHO05D007671 2.6e-23 112.1 105 56.2
Thecc.02G130200 Theobroma cacao HOM05D006134 ORTHO05D007671 2.6e-23 112.1 105 56.2
Nitab4.5_0000101g0190 Nicotiana tabacum HOM05D006134 ORTHO05D007671 3.4e-23 111.7 108 51.9
MSTRG.5438 Avicennia marina HOM05D006134 ORTHO05D007671 5.8e-23 110.9 105 56.2
Eucgr.F02572 Eucalyptus grandis HOM05D006134 ORTHO05D007671 5.8e-23 110.9 107 54.2
HanXRQChr10g0314981 Helianthus annuus HOM05D006134 ORTHO05D007671 5.8e-23 110.9 108 55.6
Sopen06g002390 Solanum pennellii HOM05D006134 ORTHO05D007671 5.8e-23 110.9 108 53.7
vmacro02291 Vaccinium macrocarpon HOM05D006134 ORTHO05D007671 7.6e-23 110.5 174 40.8
AUR62010905 Chenopodium quinoa HOM05D006134 ORTHO05D007671 1.0e-22 110.2 120 51.7
Duzib052G0391 Durio zibethinus HOM05D006134 ORTHO05D007671 1.0e-22 110.2 105 56.2
Potri.016G127200 Populus trichocarpa HOM05D006134 ORTHO05D007671 1.3e-22 109.8 105 56.2
PGR042G1126 Punica granatum HOM05D006134 ORTHO05D007671 1.3e-22 109.8 107 55.1
PGSC0003DMG400020551 Solanum tuberosum HOM05D006134 ORTHO05D007671 1.3e-22 109.8 108 53.7
Gohir.D01G010100 Gossypium hirsutum HOM05D006134 ORTHO05D007671 1.7e-22 109.4 105 56.2
Gorai.002G012200 Gossypium raimondii HOM05D006134 ORTHO05D007671 1.7e-22 109.4 105 56.2
unitig_52.g17376 Utricularia gibba HOM05D006134 ORTHO05D007671 2.9e-22 108.6 105 53.3
TWI79G0531 Tripterygium wilfordii HOM05D006134 ORTHO05D007671 3.8e-22 108.2 108 54.6
Oeu002964.1 Olea europaea HOM05D006134 ORTHO05D007671 8.4e-22 107.1 105 54.3
THA.LOC104807806 Tarenaya hassleriana HOM05D006134 ORTHO05D007671 8.4e-22 107.1 105 55.2
Thhalv10026572m.g Eutrema salsugineum HOM05D006134 ORTHO05D007671 1.1e-21 106.7 105 53.3
Mapoly0028s0104 Marchantia polymorpha HOM05D006134 ORTHO05D007671 1.1e-21 106.7 108 52.8
Migut.N01297 Erythranthe guttata HOM05D006134 ORTHO05D007671 1.9e-21 105.9 105 53.3
Gohir.A01G010500 Gossypium hirsutum HOM05D006134 ORTHO05D007671 1.9e-21 105.9 105 55.2
Aqoxy5G01105 Aquilegia oxysepala HOM05D006134 ORTHO05D007671 2.5e-21 105.5 105 53.3
CDE04G1640 Ceratophyllum demersum HOM05D006134 ORTHO05D007671 2.5e-21 105.5 108 50.0
Duzib248G0743 Durio zibethinus HOM05D006134 ORTHO05D007671 3.2e-21 105.1 130 47.7
ClCG11G010360 Citrullus lanatus HOM05D006134 ORTHO05D007671 5.5e-21 104.4 84 58.3
CDE02G2427 Ceratophyllum demersum HOM05D006134 ORTHO05D007671 7.2e-21 104.0 108 48.1
ATR0730G227 Amborella trichopoda HOM05D006134 ORTHO05D007671 1.2e-20 103.2 108 49.1
Aa31LG6G16690 Aethionema arabicum HOM05D006134 ORTHO05D007671 1.6e-20 102.8 105 52.4
Sp7g37280 Schrenkiella parvula HOM05D006134 ORTHO05D007671 2.7e-20 102.1 105 52.4
Dinv31631 Davidia involucrata HOM05D006134 ORTHO05D007671 1.8e-19 99.4 108 52.8
Pp3c14_10610 Physcomitrium patens HOM05D006134 ORTHO05D007671 3.9e-19 98.2 108 49.1
Pp3c14_10611 Physcomitrium patens HOM05D006134 ORTHO05D007671 3.9e-19 98.2 108 49.1
SMO367G0732 Selaginella moellendorffii HOM05D006134 ORTHO05D007671 3.9e-19 98.2 108 50.0
PSO210G5022 Papaver somniferum HOM05D006134 ORTHO05D007671 5.1e-19 97.8 108 50.0
PSO170G0646 Papaver somniferum HOM05D006134 ORTHO05D007671 1.5e-18 96.3 108 49.1
Sc08g0002730 Simmondsia chinensis HOM05D006134 ORTHO05D007671 1.9e-18 95.9 105 53.3
Sed0020335 Sechium edule HOM05D006134 ORTHO05D007671 9.7e-18 93.6 108 47.2
CBR_g12196 Chara braunii HOM05D006134 ORTHO05D007671 6.3e-17 90.9 106 46.2
AT4G38495 Arabidopsis thaliana HOM05D006134 ORTHO05D007671 8.2e-17 90.5 107 46.7
Carub.0007s0038 Capsella rubella HOM05D006134 ORTHO05D007671 8.2e-17 90.5 107 47.7
Prupe.7G004000 Prunus persica HOM05D006134 ORTHO05D007671 6.9e-16 87.4 59 74.6
AL7G10360 Arabidopsis lyrata HOM05D006134 ORTHO05D007671 3.4e-15 85.1 107 45.8
Os04g0274400 Oryza sativa ssp. japonica HOM05D006134 ORTHO05D007671 4.5e-15 84.7 108 43.5
HanXRQChr07g0198481 Helianthus annuus HOM05D006134 ORTHO05D007671 4.2e-13 78.2 108 43.5
A01p00050 Brassica napus HOM05D006134 ORTHO05D007671 6.1e-12 74.3 105 41.9
BcaNung01304 Brassica carinata HOM05D006134 ORTHO05D007671 3.9e-11 71.6 105 41.0
C01p00090 Brassica napus HOM05D006134 ORTHO05D007671 3.9e-11 71.6 105 41.0
Nitab4.5_0000165g0190 Nicotiana tabacum HOM05D006134 ORTHO05D007671 2.5e-10 68.9 69 53.6
BcaNung04221 Brassica carinata HOM05D006134 ORTHO05D007671 5.7e-10 67.8 105 41.9
Zm00001eb420290 Zea mays HOM05D006134 ORTHO05D007671 9.7e-10 67.0 96 35.4
SEGI_00696 Sequoiadendron giganteum HOM05D006134 ORTHO05D007671 5.3e-08 61.2 59 54.2
Sabra16G0121200 Salix brachista HOM05D006134 ORTHO05D007671 3.4e-07 58.5 61 47.5
Sabra16G0122100 Salix brachista HOM05D006134 ORTHO05D007671 3.4e-07 58.5 61 47.5
Ca_02994_v3 Cicer arietinum L. HOM05D006134 ORTHO05D007671 1.0e-06 57.0 34 73.5
Ca_02756_v3 Cicer arietinum L. HOM05D006134 ORTHO05D007671 1.7e-06 56.2 33 72.7
Ca_02758_v3 Cicer arietinum L. HOM05D006134 ORTHO05D007671 1.7e-06 56.2 33 72.7


User provided reference genes

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