Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G036900 Prunus persica HOM05D007621 ORTHO05D009631 0.0e+00 1308.5 652 100.0
MD05G1325500 Malus domestica HOM05D007621 ORTHO05D009631 2.2e-237 825.9 669 67.4
RcHm_v2.0_Chr5g0006311 Rosa chinensis HOM05D007621 ORTHO05D009631 5.0e-213 745.0 691 59.8
FvH4_3g03980 Fragaria vesca HOM05D007621 ORTHO05D009631 1.6e-211 740.0 694 58.4
FAN11G2677 Fragaria x ananassa HOM05D007621 ORTHO05D009631 2.7e-206 722.6 650 60.2
QL04p018250 Quercus lobata HOM05D007621 ORTHO05D009631 2.2e-200 703.0 650 59.1
CSS0049226 Camellia sinensis var. sinensis HOM05D007621 ORTHO05D009631 1.0e-194 684.1 695 55.5
FAN16G2797 Fragaria x ananassa HOM05D007621 ORTHO05D009631 9.8e-193 677.6 689 55.7
Rhsim02G0119600 Rhododendron simsii HOM05D007621 ORTHO05D009631 2.9e-192 676.0 672 56.8
Manes.16G020600 Manihot esculenta HOM05D007621 ORTHO05D009631 8.3e-192 674.5 686 56.0
Dinv40478 Davidia involucrata HOM05D007621 ORTHO05D009631 1.9e-191 673.3 667 55.9
Haze_06574 Corylus avellana HOM05D007621 ORTHO05D009631 2.4e-191 672.9 688 56.0
GSVIVG01003190001 Vitis vinifera HOM05D007621 ORTHO05D009631 3.2e-191 672.5 716 53.6
Ciclev10014484m.g Citrus clementina HOM05D007621 ORTHO05D009631 2.3e-189 666.4 704 53.0
TAR624G0533 Trochodendron aralioides HOM05D007621 ORTHO05D009631 6.6e-189 664.8 736 52.9
Cfa000351 Carpinus fangiana HOM05D007621 ORTHO05D009631 1.8e-186 656.8 684 55.0
Nn1g03894 Nelumbo nucifera HOM05D007621 ORTHO05D009631 1.5e-185 653.7 680 54.0
Actinidia11809 Actinidia chinensis HOM05D007621 ORTHO05D009631 8.3e-184 647.9 563 61.1
Glyma.15G067500 Glycine max HOM05D007621 ORTHO05D009631 9.2e-183 644.4 730 52.9
ClCG03G005520 Citrullus lanatus HOM05D007621 ORTHO05D009631 7.8e-182 641.3 663 54.3
Hma1.2p1_1182F.1_g264810 Hydrangea macrophylla HOM05D007621 ORTHO05D009631 1.6e-179 633.6 673 53.9
MBI02_g06002_MAGBIO Magnolia biondii HOM05D007621 ORTHO05D009631 6.2e-179 631.7 580 58.8
TWI38G0795 Tripterygium wilfordii HOM05D007621 ORTHO05D009631 8.1e-179 631.3 699 52.5
VMungo0540G1980 Vigna mungo HOM05D007621 ORTHO05D009631 8.1e-179 631.3 723 51.5
Lj6g0025549 Lotus japonicus HOM05D007621 ORTHO05D009631 5.8e-177 625.2 684 53.1
Sed0011037 Sechium edule HOM05D007621 ORTHO05D009631 4.9e-176 622.1 496 62.5
HPP92_005890 Vanilla planifolia HOM05D007621 ORTHO05D009631 8.4e-176 621.3 463 65.2
PGR042G2283 Punica granatum HOM05D007621 ORTHO05D009631 1.9e-175 620.2 654 52.9
ATR0693G363 Amborella trichopoda HOM05D007621 ORTHO05D009631 2.7e-174 616.3 463 64.6
CAN.G424.15 Capsicum annuum HOM05D007621 ORTHO05D009631 1.3e-173 614.0 676 51.3
SGA_v2.0_scaffold49G18280 Striga asiatica HOM05D007621 ORTHO05D009631 2.1e-171 606.7 650 52.0
CDE12G0841 Ceratophyllum demersum HOM05D007621 ORTHO05D009631 3.6e-171 605.9 484 62.2
MELO3C002556.2 Cucumis melo HOM05D007621 ORTHO05D009631 8.1e-171 604.7 653 53.8
CsaV3_1G011790 Cucumis sativus L. HOM05D007621 ORTHO05D009631 5.2e-170 602.1 449 65.9
Eucgr.E03798 Eucalyptus grandis HOM05D007621 ORTHO05D009631 1.2e-169 600.9 630 52.9
Nitab4.5_0006573g0020 Nicotiana tabacum HOM05D007621 ORTHO05D009631 4.4e-169 599.0 620 53.1
Lj1C1213T4 Lonicera japonica HOM05D007621 ORTHO05D009631 5.8e-169 598.6 676 51.2
MSTRG.14678 Avicennia marina HOM05D007621 ORTHO05D009631 2.2e-168 596.7 682 50.0
Nitab4.5_0000190g0070 Nicotiana tabacum HOM05D007621 ORTHO05D009631 2.9e-168 596.3 620 53.1
Sc14g0001480 Simmondsia chinensis HOM05D007621 ORTHO05D009631 1.1e-167 594.3 578 57.1
SEGI_29793 Sequoiadendron giganteum HOM05D007621 ORTHO05D009631 1.4e-167 594.0 464 62.7
Psat1g208720 Pisum sativum HOM05D007621 ORTHO05D009631 5.4e-167 592.0 445 65.2
SalBow7G3398 Salvia bowleyana HOM05D007621 ORTHO05D009631 2.1e-166 590.1 455 63.7
Cc02_g12430 Coffea canephora HOM05D007621 ORTHO05D009631 1.0e-165 587.8 651 51.6
SalBow7G0238 Salvia bowleyana HOM05D007621 ORTHO05D009631 1.0e-165 587.8 455 63.5
Ca_00253_v3 Cicer arietinum L. HOM05D007621 ORTHO05D009631 3.0e-165 586.3 509 59.3
Peaxi162Scf00083g00022 Petunia axillaris HOM05D007621 ORTHO05D009631 6.6e-165 585.1 616 52.4
CDE01G0329 Ceratophyllum demersum HOM05D007621 ORTHO05D009631 3.3e-164 582.8 465 62.4
Os04g0636000 Oryza sativa ssp. japonica HOM05D007621 ORTHO05D009631 1.4e-162 577.4 493 60.4
arahy.Tifrunner.gnm1.ann1.M1GH8V Arachis hypogaea HOM05D007621 ORTHO05D009631 1.8e-162 577.0 633 52.8
EL10Ac8g20530 Beta vulgaris HOM05D007621 ORTHO05D009631 6.9e-162 575.1 509 58.5
Phvul.006G192200 Phaseolus vulgaris HOM05D007621 ORTHO05D009631 4.4e-161 572.4 703 48.9
AUR62014718 Chenopodium quinoa HOM05D007621 ORTHO05D009631 2.2e-160 570.1 490 60.8
AUR62016897 Chenopodium quinoa HOM05D007621 ORTHO05D009631 4.9e-160 568.9 463 62.6
PGSC0003DMG400022357 Solanum tuberosum HOM05D007621 ORTHO05D009631 1.0e-157 561.2 574 52.6
Sopen02g023940 Solanum pennellii HOM05D007621 ORTHO05D009631 9.6e-156 554.7 498 58.0
Solyc02g079140.2 Solanum lycopersicum HOM05D007621 ORTHO05D009631 2.8e-155 553.1 496 57.3
arahy.Tifrunner.gnm1.ann1.14L1JV Arachis hypogaea HOM05D007621 ORTHO05D009631 6.2e-155 552.0 618 50.6
TPR.G36840 Trifolium pratense HOM05D007621 ORTHO05D009631 1.4e-154 550.8 652 49.7
PGR042G3240 Punica granatum HOM05D007621 ORTHO05D009631 3.1e-154 549.7 467 60.4
ECA248G3190 Erigeron canadensis HOM05D007621 ORTHO05D009631 4.0e-154 549.3 429 62.7
Zm00001eb069260 Zea mays HOM05D007621 ORTHO05D009631 2.6e-153 546.6 489 57.1
CDE01G0148 Ceratophyllum demersum HOM05D007621 ORTHO05D009631 1.2e-150 537.7 468 58.8
Hund23606 Selenicereus undatus HOM05D007621 ORTHO05D009631 3.9e-149 532.7 596 51.2
HanXRQChr11g0338441 Helianthus annuus HOM05D007621 ORTHO05D009631 1.1e-148 531.2 446 60.1
Lsat_1_v5_gn_1_126820 Lactuca sativa HOM05D007621 ORTHO05D009631 1.5e-148 530.8 469 57.4
Mapoly0104s0019 Marchantia polymorpha HOM05D007621 ORTHO05D009631 8.1e-147 525.0 410 62.0
Thecc.06G199600 Theobroma cacao HOM05D007621 ORTHO05D009631 8.5e-128 461.8 400 59.0
Zm00001eb081180 Zea mays HOM05D007621 ORTHO05D009631 1.5e-124 451.1 393 57.5
CBR_g725 Chara braunii HOM05D007621 ORTHO05D009631 3.2e-111 406.8 419 49.4
Aqoxy1G02733 Aquilegia oxysepala HOM05D007621 ORTHO05D009631 4.0e-109 399.8 287 67.9
FAN25G1179 Fragaria x ananassa HOM05D007621 ORTHO05D009631 8.8e-109 398.7 460 53.3
Eucgr.E03700 Eucalyptus grandis HOM05D007621 ORTHO05D009631 4.8e-107 392.9 480 49.6
CiPaw.09G157900 Carya illinoinensis HOM05D007621 ORTHO05D009631 4.8e-99 366.3 482 48.1
Zm00001eb274720 Zea mays HOM05D007621 ORTHO05D009631 6.3e-91 339.3 252 65.1
RcHm_v2.0_Chr7g0240451 Rosa chinensis HOM05D007621 ORTHO05D009631 2.9e-88 330.5 381 49.6
Medtr2g011780 Medicago truncatula HOM05D007621 ORTHO05D009631 8.0e-86 322.4 275 58.9
Oeu050825.1 Olea europaea HOM05D007621 ORTHO05D009631 8.6e-72 275.8 388 47.4
arahy.Tifrunner.gnm1.ann1.C857YU Arachis hypogaea HOM05D007621 ORTHO05D009631 2.3e-64 251.1 280 49.6
Psat1g210360 Pisum sativum HOM05D007621 ORTHO05D009631 3.8e-59 233.8 187 60.4
FvH4_6g02023 Fragaria vesca HOM05D007621 ORTHO05D009631 3.0e-40 171.0 133 57.9
Glyma.13G246302 Glycine max HOM05D007621 ORTHO05D009631 3.1e-37 161.0 156 58.3
Cre02.g116800 Chlamydomonas reinhardtii HOM05D007621 ORTHO05D009631 9.6e-31 139.4 501 26.9
Atru.chr10.2012 Acer truncatum HOM05D007621 ORTHO05D009631 1.1e-29 136.0 133 54.9
Potri.004G034301 Populus trichocarpa HOM05D007621 ORTHO05D009631 1.5e-28 132.1 78 74.4
Cpa.g.sc27.127 Carica papaya HOM05D007621 ORTHO05D009631 2.6e-28 131.3 308 37.3
SGA_v2.0_scaffold32G13107 Striga asiatica HOM05D007621 ORTHO05D009631 2.3e-16 91.7 126 44.4
AagrBONN_evm.TU.Sc2ySwM_340.408 Anthoceros agrestis HOM05D007621 ORTHO05D009631 6.7e-16 90.1 82 51.2
MCO11G679 Micromonas commoda HOM05D000032 ORTHO05D028824 8.2e-14 83.2 188 34.6
Atru.chr10.2011 Acer truncatum HOM05D007621 ORTHO05D009631 3.4e-12 77.8 49 69.4
Sabra04G0020100 Salix brachista HOM05D007621 ORTHO05D009631 7.7e-12 76.6 165 30.9
PRCOL_00005975 Prasinoderma coloniale HOM05D000032 ORTHO05D028824 7.2e-10 70.1 192 30.2
Cre03.g188750 Chlamydomonas reinhardtii HOM05D000032 ORTHO05D028824 1.4e-08 65.9 188 30.3
EL10Ac8g20531 Beta vulgaris HOM05D007621 ORTHO05D009631 6.7e-08 63.5 123 38.2
SGA_v2.0_scaffold86G26914 Striga asiatica HOM05D007621 ORTHO05D009631 8.8e-08 63.2 53 58.5


User provided reference genes

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