Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G036600 Prunus persica HOM05D006195 ORTHO05D007710 1.5e-258 895.6 424 100.0
MD10G1303200 Malus domestica HOM05D006195 ORTHO05D007710 3.2e-229 798.1 417 89.7
MD05G1325300 Malus domestica HOM05D006195 ORTHO05D007710 3.6e-220 768.1 428 85.7
RcHm_v2.0_Chr5g0006371 Rosa chinensis HOM05D006195 ORTHO05D007710 2.9e-214 748.4 426 83.6
FvH4_3g04030 Fragaria vesca HOM05D006195 ORTHO05D007710 9.5e-213 743.4 421 83.8
FAN11G1039 Fragaria x ananassa HOM05D006195 ORTHO05D007710 3.7e-209 731.5 431 82.4
CiPaw.09G158100 Carya illinoinensis HOM05D006195 ORTHO05D007710 1.3e-198 696.4 426 77.2
QL04p018330 Quercus lobata HOM05D006195 ORTHO05D007710 2.5e-197 692.2 412 78.6
FAN25G3765 Fragaria x ananassa HOM05D006195 ORTHO05D007710 5.6e-197 691.0 435 78.4
CANSAT56G3748 Cannabis sativa HOM05D006195 ORTHO05D007710 5.2e-195 684.5 424 77.8
TWI38G0511 Tripterygium wilfordii HOM05D006195 ORTHO05D007710 9.9e-194 680.2 427 77.8
Gohir.D05G168600 Gossypium hirsutum HOM05D006195 ORTHO05D007710 3.7e-193 678.3 402 79.9
Gorai.009G173800 Gossypium raimondii HOM05D006195 ORTHO05D007710 2.4e-192 675.6 402 79.6
Gohir.A05G165600 Gossypium hirsutum HOM05D006195 ORTHO05D007710 5.4e-192 674.5 402 79.4
FAN21G3429 Fragaria x ananassa HOM05D006195 ORTHO05D007710 7.8e-191 670.6 435 76.3
Atru.chr10.2006 Acer truncatum HOM05D006195 ORTHO05D007710 1.3e-190 669.8 426 74.6
Ciclev10015313m.g Citrus clementina HOM05D006195 ORTHO05D007710 3.0e-190 668.7 427 74.9
Thecc.06G199000 Theobroma cacao HOM05D006195 ORTHO05D007710 6.6e-190 667.5 403 77.9
COL.COLO4_31584 Corchorus olitorius HOM05D006195 ORTHO05D007710 3.3e-189 665.2 404 77.0
CsaV3_1G011800 Cucumis sativus L. HOM05D006195 ORTHO05D007710 7.3e-189 664.1 406 75.4
Potri.011G043000 Populus trichocarpa HOM05D006195 ORTHO05D007710 8.1e-188 660.6 406 77.3
Actinidia24060 Actinidia chinensis HOM05D006195 ORTHO05D007710 1.8e-187 659.4 415 74.7
Cfa000355 Carpinus fangiana HOM05D006195 ORTHO05D007710 3.1e-187 658.7 429 75.1
Cpa.g.sc27.120 Carica papaya HOM05D006195 ORTHO05D007710 5.2e-187 657.9 423 73.0
Eucgr.E03701 Eucalyptus grandis HOM05D006195 ORTHO05D007710 5.2e-187 657.9 411 74.9
Sed0022279 Sechium edule HOM05D006195 ORTHO05D007710 4.4e-186 654.8 406 74.9
ClCG03G005530 Citrullus lanatus HOM05D006195 ORTHO05D007710 7.6e-186 654.1 406 74.6
PGR042G1193 Punica granatum HOM05D006195 ORTHO05D007710 1.0e-182 643.7 411 73.5
Lj2A280G38 Lonicera japonica HOM05D006195 ORTHO05D007710 2.5e-181 639.0 469 68.4
GSVIVG01003194001 Vitis vinifera HOM05D006195 ORTHO05D007710 2.5e-181 639.0 403 74.9
Haze_06571 Corylus avellana HOM05D006195 ORTHO05D007710 4.3e-181 638.3 385 78.4
Rhsim02G0120000 Rhododendron simsii HOM05D006195 ORTHO05D007710 2.1e-180 636.0 433 70.9
Duzib235G1322 Durio zibethinus HOM05D006195 ORTHO05D007710 9.0e-179 630.6 402 75.1
vmacro15867 Vaccinium macrocarpon HOM05D006195 ORTHO05D007710 1.5e-178 629.8 399 73.7
Ca_18483_v3 Cicer arietinum L. HOM05D006195 ORTHO05D007710 2.6e-178 629.0 437 69.6
Phvul.002G222200 Phaseolus vulgaris HOM05D006195 ORTHO05D007710 3.8e-177 625.2 413 72.6
THA.LOC104806275 Tarenaya hassleriana HOM05D006195 ORTHO05D007710 4.9e-177 624.8 389 73.8
MBI14_g15641_MAGBIO Magnolia biondii HOM05D006195 ORTHO05D007710 8.4e-177 624.0 423 70.0
arahy.Tifrunner.gnm1.ann1.IWY5CJ Arachis hypogaea HOM05D006195 ORTHO05D007710 1.9e-176 622.9 399 73.4
VMungo0251G2515 Vigna mungo HOM05D006195 ORTHO05D007710 1.9e-176 622.9 420 71.9
TAR629G3096 Trochodendron aralioides HOM05D006195 ORTHO05D007710 2.4e-176 622.5 389 75.6
arahy.Tifrunner.gnm1.ann1.HDHM3Z Arachis hypogaea HOM05D006195 ORTHO05D007710 3.2e-176 622.1 399 73.4
Oeu038214.1 Olea europaea HOM05D006195 ORTHO05D007710 5.4e-176 621.3 405 71.1
HanXRQChr14g0437281 Helianthus annuus HOM05D006195 ORTHO05D007710 9.3e-176 620.5 416 71.2
Lsat_1_v5_gn_7_19641 Lactuca sativa HOM05D006195 ORTHO05D007710 2.1e-175 619.4 423 70.4
Solyc02g079110.3 Solanum lycopersicum HOM05D006195 ORTHO05D007710 2.7e-175 619.0 410 70.0
Lalb_Chr09g0327371 Lupinus albus HOM05D006195 ORTHO05D007710 6.0e-175 617.8 420 70.7
Sopen02g023920 Solanum pennellii HOM05D006195 ORTHO05D007710 1.3e-174 616.7 413 69.5
Glyma.07G190200 Glycine max HOM05D006195 ORTHO05D007710 2.3e-174 615.9 399 72.9
Aqoxy1G02740 Aquilegia oxysepala HOM05D006195 ORTHO05D007710 8.7e-174 614.0 395 71.6
Medtr4g091080 Medicago truncatula HOM05D006195 ORTHO05D007710 8.7e-174 614.0 414 71.3
Manes.17G039200 Manihot esculenta HOM05D006195 ORTHO05D007710 1.9e-173 612.8 383 76.5
Aa31LG6G3540 Aethionema arabicum HOM05D006195 ORTHO05D007710 5.6e-173 611.3 397 71.5
Thhalv10025271m.g Eutrema salsugineum HOM05D006195 ORTHO05D007710 2.8e-172 609.0 423 68.3
EL10Ac8g20527 Beta vulgaris HOM05D006195 ORTHO05D007710 1.1e-171 607.1 389 71.7
BcaNung02791 Brassica carinata HOM05D006195 ORTHO05D007710 1.1e-171 607.1 424 67.9
PGSC0003DMG400022408 Solanum tuberosum HOM05D006195 ORTHO05D007710 1.4e-171 606.7 410 68.8
Carub.0007s1990 Capsella rubella HOM05D006195 ORTHO05D007710 1.8e-171 606.3 385 71.4
AL7G32530 Arabidopsis lyrata HOM05D006195 ORTHO05D007710 2.4e-171 605.9 421 67.5
A01p12830 Brassica napus HOM05D006195 ORTHO05D007710 5.3e-171 604.7 404 71.0
Cc02_g12450 Coffea canephora HOM05D006195 ORTHO05D007710 9.0e-171 604.0 441 66.0
TPR.G32422 Trifolium pratense HOM05D006195 ORTHO05D007710 9.0e-171 604.0 387 73.9
PSO675G1294 Papaver somniferum HOM05D006195 ORTHO05D007710 1.2e-170 603.6 428 68.2
Sp7g19630 Schrenkiella parvula HOM05D006195 ORTHO05D007710 2.6e-170 602.4 422 67.5
C01p15450 Brassica napus HOM05D006195 ORTHO05D007710 3.4e-170 602.1 401 70.3
BolC1t01499H Brassica oleracea HOM05D006195 ORTHO05D007710 3.4e-170 602.1 401 70.3
AT4G21520 Arabidopsis thaliana HOM05D006195 ORTHO05D007710 9.9e-170 600.5 426 66.0
Sc17g0006620 Simmondsia chinensis HOM05D006195 ORTHO05D007710 9.9e-170 600.5 391 70.6
CARHR228180 Cardamine hirsuta HOM05D006195 ORTHO05D007710 1.3e-169 600.1 405 68.6
BraA01t01227Z Brassica rapa HOM05D006195 ORTHO05D007710 1.7e-169 599.7 429 68.1
Sabra11G0029600 Salix brachista HOM05D006195 ORTHO05D001726 8.4e-169 597.4 364 78.6
Migut.I00196 Erythranthe guttata HOM05D006195 ORTHO05D007710 1.1e-168 597.0 412 68.9
Migut.M01211 Erythranthe guttata HOM05D006195 ORTHO05D007710 2.4e-168 595.9 412 68.7
SalBow8G2471 Salvia bowleyana HOM05D006195 ORTHO05D007710 4.2e-168 595.1 386 71.5
Lj4g0017156 Lotus japonicus HOM05D006195 ORTHO05D007710 5.4e-168 594.7 423 67.8
MELO3C002557.2 Cucumis melo HOM05D006195 ORTHO05D007710 1.0e-166 590.5 409 69.7
MSTRG.8639 Avicennia marina HOM05D006195 ORTHO05D007710 1.3e-166 590.1 394 69.8
Nitab4.5_0009994g0040 Nicotiana tabacum HOM05D006195 ORTHO05D007710 5.1e-166 588.2 461 64.4
SGA_v2.0_scaffold7G03951 Striga asiatica HOM05D006195 ORTHO05D007710 5.1e-166 588.2 405 70.4
ECA236G2696 Erigeron canadensis HOM05D006195 ORTHO05D007710 9.6e-165 583.9 375 72.8
Peaxi162Scf00355g00914 Petunia axillaris HOM05D006195 ORTHO05D007710 1.3e-164 583.6 396 69.2
ATR0693G097 Amborella trichopoda HOM05D006195 ORTHO05D007710 5.8e-162 574.7 416 66.6
CSS0049192 Camellia sinensis var. sinensis HOM05D006195 ORTHO05D007710 3.2e-160 568.9 372 72.3
Os03g0738000 Oryza sativa ssp. japonica HOM05D006195 ORTHO05D007710 5.6e-157 558.1 380 68.9
DCAR_008069 Daucus carota HOM05D006195 ORTHO05D007710 1.6e-148 530.0 422 61.4
Ah.14g088920 Amaranthus hybridus HOM05D006195 ORTHO05D007710 2.4e-147 526.2 412 61.7
Zm00001eb056530 Zea mays HOM05D006195 ORTHO05D007710 1.2e-146 523.9 390 64.1
AUR62014719 Chenopodium quinoa HOM05D006195 ORTHO05D007710 8.8e-142 507.7 356 69.1
Pp3c6_22670 Physcomitrium patens HOM05D006195 ORTHO05D007710 1.2e-138 497.3 382 61.3
MBI14_g13652_MAGBIO Magnolia biondii HOM05D006195 ORTHO05D007710 9.4e-136 487.6 415 60.0
Mapoly0082s0056 Marchantia polymorpha HOM05D006195 ORTHO05D007710 1.2e-135 487.3 395 56.7
CDE11G0466 Ceratophyllum demersum HOM05D006195 ORTHO05D007710 1.1e-133 480.7 336 66.7
AagrBONN_evm.TU.Sc2ySwM_344.4192 Anthoceros agrestis HOM05D006195 ORTHO05D007710 2.2e-132 476.5 368 61.4
Dinv40483 Davidia involucrata HOM05D006195 ORTHO05D007710 1.1e-131 474.2 288 78.8
Hund23609 Selenicereus undatus HOM05D006195 ORTHO05D007710 5.5e-128 461.8 321 70.1
AUR62016899 Chenopodium quinoa HOM05D006195 ORTHO05D007710 1.6e-127 460.3 387 58.9
Nitab4.5_0000190g0110 Nicotiana tabacum HOM05D006195 ORTHO05D007710 8.8e-126 454.5 326 66.3
SMO137G0351 Selaginella moellendorffii HOM05D006195 ORTHO05D007710 3.1e-123 446.0 357 57.7
Psat7g108560 Pisum sativum HOM05D006195 ORTHO05D007710 3.8e-121 439.1 303 69.3
unitig_37.g12337 Utricularia gibba HOM05D006195 ORTHO05D007710 2.7e-119 433.0 410 54.4
CBR_g41455 Chara braunii HOM05D006195 ORTHO05D007710 8.0e-111 404.8 408 48.3
CBR_g20417 Chara braunii HOM05D006195 ORTHO05D007710 7.5e-109 398.3 372 51.6
Eucgr.L01396 Eucalyptus grandis HOM05D006195 ORTHO05D007710 4.9e-100 369.0 249 71.9
Potri.004G034600 Populus trichocarpa HOM05D006195 ORTHO05D007710 6.8e-94 348.6 245 69.0
SMO116G0485 Selaginella moellendorffii HOM05D006195 ORTHO05D007710 4.4e-85 319.3 274 55.1
Cre07.g326350 Chlamydomonas reinhardtii HOM05D006195 ORTHO05D007710 8.3e-84 315.1 395 43.0
TPR.G37128 Trifolium pratense HOM05D006195 ORTHO05D007710 5.4e-83 312.4 179 79.3
Nn1g03899 Nelumbo nucifera HOM05D006195 ORTHO05D007710 1.0e-81 308.1 465 41.3
HPP92_018057 Vanilla planifolia HOM05D006195 ORTHO05D007710 1.7e-81 307.4 308 51.6
SalBow6G2099 Salvia bowleyana HOM05D006195 ORTHO05D007710 1.1e-78 298.1 171 77.8
SalBow6G4337 Salvia bowleyana HOM05D006195 ORTHO05D007710 1.1e-78 298.1 171 77.8
MCO07G204 Micromonas commoda HOM05D006195 ORTHO05D007710 6.4e-76 288.9 396 40.7
SalBow1G5137 Salvia bowleyana HOM05D006195 ORTHO05D007710 2.7e-66 256.9 146 78.8
Dinv18994 Davidia involucrata HOM05D006195 ORTHO05D007710 1.3e-55 221.5 220 56.4
Manes.10G084901 Manihot esculenta HOM05D006195 ORTHO05D007710 1.2e-53 214.9 127 81.1
GSVIVG01003189001 Vitis vinifera HOM05D006195 ORTHO05D007710 2.5e-48 197.2 141 67.4
SalBow4G2205 Salvia bowleyana HOM05D006195 ORTHO05D007710 2.6e-45 187.2 103 80.6
PRCOL_00004057 Prasinoderma coloniale HOM05D006195 ORTHO05D007710 9.9e-45 185.3 293 35.8
SHI02125 Sapria himalayana HOM05D006195 ORTHO05D007710 7.1e-43 179.1 101 76.2
Thecc.06G199100 Theobroma cacao HOM05D006195 ORTHO05D007710 9.6e-40 168.7 99 76.8
SalBow1G7985 Salvia bowleyana HOM05D006195 ORTHO05D007710 1.6e-39 167.9 121 66.1
Nitab4.5_0003834g0010 Nicotiana tabacum HOM05D006195 ORTHO05D007710 9.0e-38 162.2 127 65.4
CSS0050458 Camellia sinensis var. sinensis HOM05D000911 ORTHO05D007710 1.2e-37 161.8 90 78.9
SHI48938 Sapria himalayana HOM05D006195 ORTHO05D007710 1.3e-31 141.7 117 57.3
SEGI_17138 Sequoiadendron giganteum HOM05D006195 ORTHO05D007710 5.5e-27 126.3 80 66.2
SHI02124 Sapria himalayana HOM05D006195 ORTHO05D007710 1.7e-23 114.8 208 38.9
HPP92_018063 Vanilla planifolia HOM05D006195 ORTHO05D007710 1.7e-23 114.8 164 42.7
AL117U10020 Arabidopsis lyrata HOM05D064442 ORTHO05D011622 1.0e-17 95.5 92 52.2
CSS0013325 Camellia sinensis var. sinensis HOM05D006195 ORTHO05D007710 3.8e-12 77.0 75 49.3
FAN22G0904 Fragaria x ananassa HOM05D002999 ORTHO05D003137 2.7e-10 70.9 226 27.9
Pp3c2_19830 Physcomitrium patens HOM05D002999 ORTHO05D003137 2.3e-09 67.8 252 25.8
AagrBONN_evm.TU.Sc2ySwM_362.297 Anthoceros agrestis HOM05D002999 ORTHO05D003137 1.5e-08 65.1 281 25.3
HanXRQChr15g0466521 Helianthus annuus HOM05D002999 ORTHO05D003137 1.5e-08 65.1 238 23.1
Hma1.2p1_1375F.1_g279040 Hydrangea macrophylla HOM05D003825 ORTHO05D004491 1.5e-08 65.1 307 23.1
HanXRQChr09g0256871 Helianthus annuus HOM05D002999 ORTHO05D003137 2.0e-08 64.7 238 23.1
HanXRQChr00c0537g0575611 Helianthus annuus HOM05D002999 ORTHO05D003137 2.6e-08 64.3 238 22.7
Phvul.011G045900 Phaseolus vulgaris HOM05D003825 ORTHO05D004491 3.3e-08 63.9 284 23.2
Pp3c10_3720 Physcomitrium patens HOM05D002999 ORTHO05D003137 4.4e-08 63.5 252 24.6
AUR62043984 Chenopodium quinoa HOM05D002999 ORTHO05D003137 9.7e-08 62.4 216 25.9
arahy.Tifrunner.gnm1.ann1.BV32DL Arachis hypogaea HOM05D003825 ORTHO05D004491 1.3e-07 62.0 237 24.9
CSS0007779 Camellia sinensis var. sinensis HOM05D003825 ORTHO05D004491 1.3e-07 62.0 307 23.8
FAN07G0959 Fragaria x ananassa HOM05D002999 ORTHO05D003137 1.3e-07 62.0 246 24.8
Lalb_Chr08g0246621 Lupinus albus HOM05D003825 ORTHO05D004491 1.7e-07 61.6 286 23.4
VMungo1127G1308 Vigna mungo HOM05D003825 ORTHO05D004491 1.7e-07 61.6 259 23.2
AUR62011330 Chenopodium quinoa HOM05D003825 ORTHO05D004491 2.2e-07 61.2 295 22.7
AUR62016731 Chenopodium quinoa HOM05D003825 ORTHO05D004491 2.2e-07 61.2 295 22.7
arahy.Tifrunner.gnm1.ann1.VS3LYX Arachis hypogaea HOM05D003825 ORTHO05D004491 2.8e-07 60.8 237 24.9
RcHm_v2.0_Chr6g0264111 Rosa chinensis HOM05D003825 ORTHO05D004491 2.8e-07 60.8 307 23.8
AT4G34460 Arabidopsis thaliana HOM05D003825 ORTHO05D004491 3.7e-07 60.5 306 23.2
FvH4_4g16870 Fragaria vesca HOM05D002999 ORTHO05D003137 3.7e-07 60.5 246 24.4
Lsat_1_v5_gn_7_89161 Lactuca sativa HOM05D003825 ORTHO05D004491 3.7e-07 60.5 308 23.1
C01p04290 Brassica napus HOM05D003825 ORTHO05D004491 4.8e-07 60.1 270 23.3
BolC1t00419H Brassica oleracea HOM05D003825 ORTHO05D004491 4.8e-07 60.1 272 23.5
Nn5g29575 Nelumbo nucifera HOM05D003825 ORTHO05D004491 4.8e-07 60.1 295 22.7
arahy.Tifrunner.gnm1.ann1.NCS46Q Arachis hypogaea HOM05D003825 ORTHO05D004491 8.2e-07 59.3 237 24.1
arahy.Tifrunner.gnm1.ann1.NG5KDE Arachis hypogaea HOM05D003825 ORTHO05D004491 8.2e-07 59.3 237 24.1
A01p03980 Brassica napus HOM05D003825 ORTHO05D004491 8.2e-07 59.3 270 23.3
A08p16790 Brassica napus HOM05D003825 ORTHO05D004491 8.2e-07 59.3 257 22.6
BraA01t00386Z Brassica rapa HOM05D003825 ORTHO05D004491 8.2e-07 59.3 270 23.3
Hund06228 Selenicereus undatus HOM05D003825 ORTHO05D004491 8.2e-07 59.3 308 22.1
C03p85750 Brassica napus HOM05D003825 ORTHO05D004491 1.1e-06 58.9 250 22.8
BolC3t20866H Brassica oleracea HOM05D003825 ORTHO05D004491 1.1e-06 58.9 250 22.8
ECA247G2129 Erigeron canadensis HOM05D002999 ORTHO05D003137 1.1e-06 58.9 238 23.5
MD10G1077300 Malus domestica HOM05D003825 ORTHO05D004491 1.1e-06 58.9 287 23.3
Psat5g006200 Pisum sativum HOM05D003825 ORTHO05D004491 1.4e-06 58.5 208 23.6
Potri.009G115300 Populus trichocarpa HOM05D003825 ORTHO05D004491 1.4e-06 58.5 307 23.1
Sabra04G0102100 Salix brachista HOM05D003825 ORTHO05D004491 1.4e-06 58.5 307 22.8
Sabra14G0102500 Salix brachista HOM05D002999 ORTHO05D003137 1.4e-06 58.5 150 28.7
CARHR242280 Cardamine hirsuta HOM05D003825 ORTHO05D004491 1.8e-06 58.2 270 23.3
Lalb_Chr03g0025731 Lupinus albus HOM05D003825 ORTHO05D004491 1.8e-06 58.2 247 23.9
Rhsim11G0176400 Rhododendron simsii HOM05D003825 ORTHO05D004491 1.8e-06 58.2 287 23.3
Ah.01g019430 Amaranthus hybridus HOM05D003825 ORTHO05D004491 2.4e-06 57.8 287 23.0
Ciclev10028655m.g Citrus clementina HOM05D003825 ORTHO05D004491 2.4e-06 57.8 287 23.7
Thhalv10025475m.g Eutrema salsugineum HOM05D003825 ORTHO05D004491 2.4e-06 57.8 270 23.3
TPR.G38203 Trifolium pratense HOM05D003825 ORTHO05D004491 2.4e-06 57.8 208 23.1
CSS0004129 Camellia sinensis var. sinensis HOM05D003825 ORTHO05D004491 3.1e-06 57.4 285 22.1
CANSAT01G0308 Cannabis sativa HOM05D003825 ORTHO05D004491 3.1e-06 57.4 322 22.4
Medtr5g009530 Medicago truncatula HOM05D000684 ORTHO05D000688 4.1e-06 57.0 289 21.8
Aqoxy2G03169 Aquilegia oxysepala HOM05D002999 ORTHO05D003137 5.3e-06 56.6 249 23.7
Haze_02378 Corylus avellana HOM05D003825 ORTHO05D004491 5.3e-06 56.6 310 22.3
ECA236G2533 Erigeron canadensis HOM05D003825 ORTHO05D004491 5.3e-06 56.6 293 21.8
GSVIVG01031958001 Vitis vinifera HOM05D003825 ORTHO05D004491 5.3e-06 56.6 288 22.9
DCAR_022117 Daucus carota HOM05D003825 ORTHO05D004491 7.0e-06 56.2 250 24.8
Cpa.g.sc62.142 Carica papaya HOM05D003825 ORTHO05D004491 9.1e-06 55.8 287 23.3
SGA_v2.0_scaffold58G20541 Striga asiatica HOM05D003825 ORTHO05D004491 9.1e-06 55.8 309 22.0


User provided reference genes

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