Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G036500 Prunus persica HOM05D004656 ORTHO05D005404 0.0e+00 1543.5 777 100.0
MD10G1303000 Malus domestica HOM05D004656 ORTHO05D005404 0.0e+00 1388.6 777 89.6
RcHm_v2.0_Chr5g0006531 Rosa chinensis HOM05D004656 ORTHO05D005404 0.0e+00 1357.4 778 88.0
FvH4_3g04050 Fragaria vesca HOM05D004656 ORTHO05D005404 0.0e+00 1312.0 777 84.3
FAN11G0019 Fragaria x ananassa HOM05D004656 ORTHO05D005404 0.0e+00 1306.2 781 83.9
FAN16G1451 Fragaria x ananassa HOM05D004656 ORTHO05D005404 0.0e+00 1266.1 777 82.5
FAN25G3623 Fragaria x ananassa HOM05D004656 ORTHO05D005404 0.0e+00 1255.4 879 74.1
QL03p053091 Quercus lobata HOM05D004656 ORTHO05D005404 0.0e+00 1248.4 777 81.9
QL05p081970 Quercus lobata HOM05D004656 ORTHO05D005404 0.0e+00 1248.4 777 81.9
CiPaw.09G158300 Carya illinoinensis HOM05D004656 ORTHO05D005404 0.0e+00 1223.8 778 79.8
GSVIVG01003206001 Vitis vinifera HOM05D004656 ORTHO05D005404 0.0e+00 1213.0 778 79.0
Atru.chr10.2003 Acer truncatum HOM05D004656 ORTHO05D005404 0.0e+00 1208.4 779 78.3
Dinv39815 Davidia involucrata HOM05D004656 ORTHO05D005404 0.0e+00 1205.3 778 77.9
CANSAT56G3558 Cannabis sativa HOM05D004656 ORTHO05D005404 0.0e+00 1198.7 778 77.6
Potri.004G034900 Populus trichocarpa HOM05D004656 ORTHO05D005404 0.0e+00 1198.0 780 78.3
Thecc.06G198700 Theobroma cacao HOM05D004656 ORTHO05D005404 0.0e+00 1197.2 778 77.6
Duzib160G0757 Durio zibethinus HOM05D004656 ORTHO05D005404 0.0e+00 1181.0 796 76.0
Gorai.011G022700 Gossypium raimondii HOM05D004656 ORTHO05D005404 0.0e+00 1180.6 779 77.7
COL.COLO4_31575 Corchorus olitorius HOM05D004656 ORTHO05D005404 0.0e+00 1174.1 778 76.1
Gohir.D10G021600 Gossypium hirsutum HOM05D004656 ORTHO05D005404 0.0e+00 1172.9 789 76.9
Gohir.A10G020800 Gossypium hirsutum HOM05D004656 ORTHO05D005404 0.0e+00 1170.6 778 77.5
Cfa000358 Carpinus fangiana HOM05D004656 ORTHO05D005404 0.0e+00 1159.8 778 76.0
Ciclev10014364m.g Citrus clementina HOM05D004656 ORTHO05D005404 0.0e+00 1153.7 778 75.8
TWI38G2153 Tripterygium wilfordii HOM05D004656 ORTHO05D005404 0.0e+00 1152.1 776 75.9
Sed0019970 Sechium edule HOM05D004656 ORTHO05D005404 0.0e+00 1148.3 778 74.6
Lj4g0008048 Lotus japonicus HOM05D004656 ORTHO05D005404 0.0e+00 1144.4 780 74.4
Lalb_Chr05g0218181 Lupinus albus HOM05D004656 ORTHO05D005404 0.0e+00 1140.9 781 74.0
Medtr4g090990 Medicago truncatula HOM05D004656 ORTHO05D005404 0.0e+00 1136.7 779 73.4
Nn2g12691 Nelumbo nucifera HOM05D004656 ORTHO05D005404 0.0e+00 1134.0 778 73.8
vmacro03819 Vaccinium macrocarpon HOM05D004656 ORTHO05D005404 0.0e+00 1133.6 869 68.5
Glyma.07G190600 Glycine max HOM05D004656 ORTHO05D005404 0.0e+00 1130.9 780 73.5
Cpa.g.sc27.117 Carica papaya HOM05D004656 ORTHO05D005404 0.0e+00 1130.2 774 75.2
TPR.G32417 Trifolium pratense HOM05D004656 ORTHO05D005404 0.0e+00 1126.7 790 71.6
Sabra04G0020600 Salix brachista HOM05D004656 ORTHO05D005404 0.0e+00 1120.5 751 76.8
Psat7g109640 Pisum sativum HOM05D004656 ORTHO05D005404 0.0e+00 1115.1 779 72.1
arahy.Tifrunner.gnm1.ann1.N579TE Arachis hypogaea HOM05D004656 ORTHO05D005404 0.0e+00 1110.1 779 71.6
DCAR_004136 Daucus carota HOM05D004656 ORTHO05D005404 0.0e+00 1108.6 779 71.4
CSS0039613 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 0.0e+00 1107.0 778 73.9
Solyc02g079050.3 Solanum lycopersicum HOM05D004656 ORTHO05D005404 0.0e+00 1105.1 778 71.6
Sopen02g023860 Solanum pennellii HOM05D004656 ORTHO05D005404 0.0e+00 1104.7 778 71.6
arahy.Tifrunner.gnm1.ann1.9GFP5H Arachis hypogaea HOM05D004656 ORTHO05D005404 0.0e+00 1099.3 804 69.5
AT4G21530 Arabidopsis thaliana HOM05D004656 ORTHO05D005404 0.0e+00 1094.7 778 70.2
AL7G32500 Arabidopsis lyrata HOM05D004656 ORTHO05D005404 0.0e+00 1093.6 775 70.5
PSO063G3544 Papaver somniferum HOM05D004656 ORTHO05D005404 0.0e+00 1090.9 780 71.3
Carub.0007s1989 Capsella rubella HOM05D004656 ORTHO05D005404 0.0e+00 1087.0 771 69.6
Cc02_g12490 Coffea canephora HOM05D004656 ORTHO05D005404 0.0e+00 1083.9 779 70.2
THA.LOC104812734 Tarenaya hassleriana HOM05D004656 ORTHO05D005404 0.0e+00 1083.9 771 70.0
Thhalv10024471m.g Eutrema salsugineum HOM05D004656 ORTHO05D005404 0.0e+00 1082.0 776 69.3
ClCG01G022700 Citrullus lanatus HOM05D004656 ORTHO05D005404 0.0e+00 1080.1 778 71.0
MELO3C025319.2 Cucumis melo HOM05D004656 ORTHO05D005404 0.0e+00 1079.3 778 70.8
CAN.G1181.24 Capsicum annuum HOM05D004656 ORTHO05D005404 0.0e+00 1078.2 781 70.3
CsaV3_1G030810 Cucumis sativus L. HOM05D004656 ORTHO05D005404 5.3e-312 1074.3 778 70.8
Aqoxy7G03085 Aquilegia oxysepala HOM05D004656 ORTHO05D005404 5.3e-312 1073.9 782 70.8
CARHR228190 Cardamine hirsuta HOM05D004656 ORTHO05D005404 5.3e-312 1073.9 771 68.7
BraA01t01228Z Brassica rapa HOM05D004656 ORTHO05D005404 1.1e-311 1072.8 782 68.3
Aa31LG6G3550 Aethionema arabicum HOM05D004656 ORTHO05D005404 8.0e-311 1070.1 778 68.6
Phvul.002G222500 Phaseolus vulgaris HOM05D004656 ORTHO05D005404 1.1e-310 1069.7 783 70.6
BolC1t01500H Brassica oleracea HOM05D004656 ORTHO05D005404 1.4e-310 1069.3 777 68.5
A01p12840 Brassica napus HOM05D004656 ORTHO05D005404 2.3e-310 1068.5 777 68.3
C01p15460 Brassica napus HOM05D004656 ORTHO05D005404 5.3e-310 1067.4 786 67.7
Migut.E00415 Erythranthe guttata HOM05D004656 ORTHO05D005404 4.4e-309 1064.3 779 68.7
VMungo0251G3002 Vigna mungo HOM05D004656 ORTHO05D005404 5.8e-309 1063.9 780 69.9
HanXRQChr17g0551051 Helianthus annuus HOM05D004656 ORTHO05D005404 1.3e-308 1062.8 780 69.0
Nitab4.5_0000190g0180 Nicotiana tabacum HOM05D004656 ORTHO05D005404 1.9e-307 1058.9 838 65.8
Nitab4.5_0003574g0090 Nicotiana tabacum HOM05D004656 ORTHO05D005404 9.3e-307 1056.6 777 69.6
PSO782G2217 Papaver somniferum HOM05D004656 ORTHO05D005404 6.0e-306 1053.9 780 69.7
Peaxi162Scf00588g01013 Petunia axillaris HOM05D004656 ORTHO05D005404 1.0e-305 1053.1 780 69.1
SalBow7G0840 Salvia bowleyana HOM05D004656 ORTHO05D005404 1.6e-303 1045.8 778 67.5
SalBow7G0885 Salvia bowleyana HOM05D004656 ORTHO05D005404 1.6e-303 1045.8 778 67.6
PGR042G3654 Punica granatum HOM05D004656 ORTHO05D005404 2.4e-302 1042.0 780 69.2
BcaNung02789 Brassica carinata HOM05D004656 ORTHO05D005404 9.0e-302 1040.0 803 65.8
Lsat_1_v5_gn_4_57080 Lactuca sativa HOM05D004656 ORTHO05D005404 1.5e-301 1039.3 782 68.7
Manes.15G100000 Manihot esculenta HOM05D004656 ORTHO05D005404 2.6e-301 1038.5 740 72.2
Sp7g19640 Schrenkiella parvula HOM05D004656 ORTHO05D005404 7.6e-301 1036.9 777 67.3
ECA234G0402 Erigeron canadensis HOM05D004656 ORTHO05D005404 3.2e-299 1031.6 783 67.6
Haze_06568 Corylus avellana HOM05D004656 ORTHO05D005404 2.7e-298 1028.5 722 73.5
MBI16_g41806_MAGBIO Magnolia biondii HOM05D004656 ORTHO05D005404 1.8e-297 1025.8 880 62.0
Sc17g0006590 Simmondsia chinensis HOM05D004656 ORTHO05D005404 8.7e-297 1023.5 779 66.6
AUR62016904 Chenopodium quinoa HOM05D004656 ORTHO05D005404 4.6e-290 1001.1 777 65.3
Oeu053939.3 Olea europaea HOM05D004656 ORTHO05D005404 3.0e-289 998.4 778 65.3
Lj2A281G21 Lonicera japonica HOM05D004656 ORTHO05D005404 3.9e-281 971.5 775 67.0
AUR62014723 Chenopodium quinoa HOM05D004656 ORTHO05D005404 1.2e-277 959.9 746 64.9
SGA_v2.0_scaffold92G28242 Striga asiatica HOM05D004656 ORTHO05D005404 3.0e-273 945.3 784 62.2
ATR0580G317 Amborella trichopoda HOM05D004656 ORTHO05D005404 1.8e-262 909.4 783 61.7
HPP92_015366 Vanilla planifolia HOM05D004656 ORTHO05D005404 1.8e-254 882.9 794 58.6
EL10Ac8g20612 Beta vulgaris HOM05D004656 ORTHO05D005404 2.0e-253 879.4 772 60.5
Zm00001eb192820 Zea mays HOM05D004656 ORTHO05D005404 5.2e-225 785.0 776 52.7
Ca_18486_v3 Cicer arietinum L. HOM05D004656 ORTHO05D005404 3.2e-222 775.8 541 73.6
GSVIVG01003202001 Vitis vinifera HOM05D004656 ORTHO05D005404 2.8e-218 762.7 532 74.4
BcaNung02790 Brassica carinata HOM05D004656 ORTHO05D005404 4.6e-213 745.3 499 72.5
TAR626G0166 Trochodendron aralioides HOM05D004656 ORTHO05D005404 3.5e-205 719.2 479 76.4
AL7G32520 Arabidopsis lyrata HOM05D004656 ORTHO05D005404 6.6e-196 688.3 595 61.5
CDE02G2476 Ceratophyllum demersum HOM05D004656 ORTHO05D005404 2.5e-195 686.4 774 51.4
Eucgr.E03497 Eucalyptus grandis HOM05D004656 ORTHO05D005404 1.1e-187 661.0 435 74.0
Pp3c19_17530 Physcomitrium patens HOM05D004656 ORTHO05D005404 7.9e-157 558.5 803 40.8
Eucgr.D02667 Eucalyptus grandis HOM05D004656 ORTHO05D005404 1.5e-155 554.3 405 69.9
Mapoly0038s0098 Marchantia polymorpha HOM05D004656 ORTHO05D005404 2.8e-154 550.1 790 40.3
unitig_8.g3352 Utricularia gibba HOM05D004656 ORTHO05D005404 5.3e-153 545.8 514 57.6
Hma1.2p1_1241F.1_g269840 Hydrangea macrophylla HOM05D004656 ORTHO05D005404 1.0e-143 515.0 508 60.0
AagrBONN_evm.TU.Sc2ySwM_117.1500 Anthoceros agrestis HOM05D004656 ORTHO05D005404 1.5e-115 421.4 749 34.8
BcaC09g51334 Brassica carinata HOM05D004656 ORTHO05D005404 6.2e-109 399.4 444 53.4
CBR_g50890 Chara braunii HOM05D004656 ORTHO05D000048 1.7e-106 391.3 831 32.1
Hund23621 Selenicereus undatus HOM05D004656 ORTHO05D005404 8.3e-106 389.0 379 55.4
BcaC09g51339 Brassica carinata HOM05D004656 ORTHO05D005404 1.1e-102 378.6 449 49.4
Eucgr.E03552 Eucalyptus grandis HOM05D004656 ORTHO05D005404 4.1e-97 360.1 256 71.1
arahy.Tifrunner.gnm1.ann1.QWV34J Arachis hypogaea HOM05D004656 ORTHO05D005404 2.4e-89 334.3 266 66.2
BcaC09g51337 Brassica carinata HOM05D004656 ORTHO05D005404 7.1e-89 332.8 381 50.4
Ca_18485_v3 Cicer arietinum L. HOM05D004656 ORTHO05D005404 3.6e-85 320.5 190 76.3
Eucgr.C00026 Eucalyptus grandis HOM05D004656 ORTHO05D005404 3.3e-78 297.4 182 81.3
SEGI_33901 Sequoiadendron giganteum HOM05D004656 ORTHO05D005404 6.6e-71 273.1 393 39.7
unitig_8.g3351 Utricularia gibba HOM05D004656 ORTHO05D005404 1.8e-68 265.0 229 57.6
SMO119G0264 Selaginella moellendorffii HOM05D004656 ORTHO05D005404 9.0e-60 236.1 770 27.0
RcHm_v2.0_Chr5g0006431 Rosa chinensis HOM05D004656 ORTHO05D005404 7.6e-59 233.0 322 46.9
QL02p031126 Quercus lobata HOM05D004656 ORTHO05D005404 2.1e-53 214.9 174 68.4
SHI02118 Sapria himalayana HOM05D004656 ORTHO05D005404 2.5e-46 191.4 225 46.7
PRCOL_00000091 Prasinoderma coloniale HOM05D004656 ORTHO05D005404 5.3e-36 157.1 462 26.2
SHI02121 Sapria himalayana HOM05D004656 ORTHO05D005404 1.3e-34 152.5 254 38.6
Os02g0785900 Oryza sativa ssp. japonica HOM05D004656 ORTHO05D005404 2.5e-33 148.3 109 61.5
SEGI_08767 Sequoiadendron giganteum HOM05D004656 ORTHO05D005404 2.7e-32 144.8 172 48.3
CSS0005991 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 1.1e-30 139.4 105 66.7
Hund23620 Selenicereus undatus HOM05D004656 ORTHO05D005404 1.5e-30 139.0 86 76.7
MCO05G135 Micromonas commoda HOM05D004656 ORTHO05D005404 3.3e-30 137.9 486 26.5
Zm00001eb125490 Zea mays HOM05D004656 ORTHO05D005404 5.7e-30 137.1 109 58.7
TAR369G0180 Trochodendron aralioides HOM05D004656 ORTHO05D005404 1.7e-29 135.6 71 84.5
CSS0025603 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 2.8e-29 134.8 82 76.8
Zm00001eb384090 Zea mays HOM05D004656 ORTHO05D005404 8.2e-29 133.3 109 57.8
Cre12.g556650 Chlamydomonas reinhardtii HOM05D004656 ORTHO05D005404 4.1e-28 131.0 506 24.1
EL10Ac6g14063 Beta vulgaris HOM05D004656 ORTHO05D005404 5.3e-28 130.6 86 74.4
CSS0042439 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 2.0e-27 128.6 82 74.4
Hma1.2p1_0144F.1_g064710 Hydrangea macrophylla HOM05D004656 ORTHO05D005404 1.0e-26 126.3 61 95.1
EL10Ac9g22460 Beta vulgaris HOM05D004656 ORTHO05D005404 2.2e-26 125.2 84 72.6
CSS0038861 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 8.5e-26 123.2 82 72.0
Eucgr.C00045 Eucalyptus grandis HOM05D004656 ORTHO05D005404 1.1e-25 122.9 79 77.2
CSS0002071 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 9.4e-25 119.8 77 74.0
Eucgr.E01958 Eucalyptus grandis HOM05D004656 ORTHO05D005404 9.4e-25 119.8 89 62.9
Haze_06207 Corylus avellana HOM05D004656 ORTHO05D005404 1.2e-24 119.4 61 90.2
SGA_v2.0_scaffold159G37668 Striga asiatica HOM05D004656 ORTHO05D005404 6.1e-24 117.1 336 30.1
Zm00001eb374130 Zea mays HOM05D004656 ORTHO05D005404 5.7e-22 110.5 61 78.7
Hma1.2p1_1241F.1_g269830 Hydrangea macrophylla HOM05D004656 ORTHO05D005404 3.1e-20 104.8 61 82.0
MELO3C008912.2 Cucumis melo HOM05D004656 ORTHO05D005404 7.7e-19 100.1 55 87.3
MELO3C032683.2 Cucumis melo HOM05D004656 ORTHO05D005404 4.2e-17 94.4 62 67.7
SHI02114 Sapria himalayana HOM05D004656 ORTHO05D005404 9.4e-17 93.2 78 55.1
EL10Ac3g05965 Beta vulgaris HOM05D004656 ORTHO05D005404 3.6e-16 91.3 57 75.4
CSS0033314 Camellia sinensis var. sinensis HOM05D003145 ORTHO05D003586 4.7e-16 90.9 65 69.2
CSS0037848 Camellia sinensis var. sinensis HOM05D003145 ORTHO05D003586 4.7e-16 90.9 65 69.2
Zm00001eb266270 Zea mays HOM05D004656 ORTHO05D005404 2.3e-15 88.6 80 51.2
CSS0023832 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 1.3e-13 82.8 82 54.9
Eucgr.C00011 Eucalyptus grandis HOM05D004656 ORTHO05D005404 2.2e-13 82.0 55 67.3
Eucgr.E03560 Eucalyptus grandis HOM05D004656 ORTHO05D005404 8.3e-13 80.1 55 65.5
Eucgr.E03557 Eucalyptus grandis HOM05D004656 ORTHO05D005404 1.4e-12 79.3 60 61.7
Eucgr.L00388 Eucalyptus grandis HOM05D004656 ORTHO05D005404 2.0e-11 75.5 60 63.3
Eucgr.D02662 Eucalyptus grandis HOM05D004656 ORTHO05D005404 2.1e-08 65.5 79 51.9
SHI02119 Sapria himalayana HOM05D004656 ORTHO05D005404 6.1e-08 63.9 55 58.2
Actinidia29288 Actinidia chinensis HOM05D004656 ORTHO05D005404 1.4e-07 62.8 31 90.3
CSS0036547 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 2.3e-07 62.0 82 43.9


User provided reference genes

Program Settings