Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G036300 Prunus persica HOM05D006902 ORTHO05D008468 1.1e-81 307.0 201 100.0
MD10G1302800 Malus domestica HOM05D006902 ORTHO05D008468 4.2e-62 241.9 204 75.0
FvH4_3g04070 Fragaria vesca HOM05D006902 ORTHO05D008468 3.3e-46 189.1 198 61.1
RcHm_v2.0_Chr5g0006551 Rosa chinensis HOM05D006902 ORTHO05D008468 9.5e-46 187.6 201 67.7
FAN28G0433 Fragaria x ananassa HOM05D006902 ORTHO05D008468 1.5e-43 180.3 201 66.7
FvH4_1g04320 Fragaria vesca HOM05D006902 ORTHO05D008468 7.5e-43 177.9 201 66.7
QL03p053069 Quercus lobata HOM05D006902 ORTHO05D008468 9.2e-41 171.0 179 69.8
Potri.011G043400 Populus trichocarpa HOM05D006902 ORTHO05D008468 2.5e-38 162.9 200 52.0
Sabra11G0030000 Salix brachista HOM05D006902 ORTHO05D008468 6.8e-36 154.8 200 51.0
Thecc.06G198400 Theobroma cacao HOM05D006902 ORTHO05D008468 8.9e-36 154.5 186 62.4
Atru.chr10.2001 Acer truncatum HOM05D006902 ORTHO05D008468 1.2e-35 154.1 203 50.2
CsaV3_4G028920 Cucumis sativus L. HOM05D006902 ORTHO05D008468 1.5e-35 153.7 183 57.9
Sed0006938 Sechium edule HOM05D006902 ORTHO05D008468 2.6e-35 152.9 200 55.0
DCAR_008067 Daucus carota HOM05D006902 ORTHO05D008468 4.4e-35 152.1 189 61.9
Dinv40499 Davidia involucrata HOM05D006902 ORTHO05D008468 7.5e-35 151.4 173 58.4
Hma1.2p1_0144F.1_g064740 Hydrangea macrophylla HOM05D006902 ORTHO05D008468 7.5e-35 151.4 199 55.8
Manes.16G021000 Manihot esculenta HOM05D006902 ORTHO05D008468 9.9e-35 151.0 202 58.4
Ciclev10016776m.g Citrus clementina HOM05D006902 ORTHO05D008468 1.1e-33 147.5 197 56.9
CiPaw.09G158500 Carya illinoinensis HOM05D006902 ORTHO05D008468 5.4e-33 145.2 178 62.4
TWI38G1087 Tripterygium wilfordii HOM05D006902 ORTHO05D008468 9.2e-33 144.4 175 60.0
Potri.004G035200 Populus trichocarpa HOM05D006902 ORTHO05D008468 1.2e-32 144.1 165 52.1
Actinidia24062 Actinidia chinensis HOM05D006902 ORTHO05D008468 1.3e-31 140.6 197 54.3
Lsat_1_v5_gn_4_57121 Lactuca sativa HOM05D006902 ORTHO05D008468 1.7e-31 140.2 196 59.7
PSO063G2673 Papaver somniferum HOM05D006902 ORTHO05D008468 1.7e-31 140.2 196 56.1
ClCG04G003630 Citrullus lanatus HOM05D006902 ORTHO05D008468 5.1e-31 138.7 196 58.2
Gohir.A05G165200 Gossypium hirsutum HOM05D006902 ORTHO05D008468 8.6e-31 137.9 185 55.7
Rhsim02G0120100 Rhododendron simsii HOM05D006902 ORTHO05D008468 1.1e-30 137.5 187 48.7
Nn8g40519 Nelumbo nucifera HOM05D006902 ORTHO05D008468 5.6e-30 135.2 176 47.7
PGSC0003DMG402010824 Solanum tuberosum HOM05D006902 ORTHO05D008468 5.6e-30 135.2 171 50.3
PSO782G4966 Papaver somniferum HOM05D006902 ORTHO05D008468 7.3e-30 134.8 196 54.6
Gohir.D05G168200 Gossypium hirsutum HOM05D006902 ORTHO05D008468 3.6e-29 132.5 185 55.1
Gorai.009G173300 Gossypium raimondii HOM05D006902 ORTHO05D008468 6.2e-29 131.7 185 55.1
Eucgr.D00710 Eucalyptus grandis HOM05D006902 ORTHO05D008468 8.1e-29 131.3 172 59.3
QL05p081948 Quercus lobata HOM05D006902 ORTHO05D008468 8.1e-29 131.3 179 60.3
Sc05g0008060 Simmondsia chinensis HOM05D006902 ORTHO05D008468 1.1e-28 131.0 200 55.0
Sc05g0010000 Simmondsia chinensis HOM05D006902 ORTHO05D008468 1.1e-28 131.0 200 55.0
Migut.H01513 Erythranthe guttata HOM05D006902 ORTHO05D008468 1.8e-28 130.2 187 55.6
FAN25G0692 Fragaria x ananassa HOM05D006902 ORTHO05D008468 4.0e-28 129.0 193 54.9
Sopen10g004990 Solanum pennellii HOM05D006902 ORTHO05D008468 4.0e-28 129.0 163 51.5
CANSAT56G2140 Cannabis sativa HOM05D006902 ORTHO05D008468 1.5e-27 127.1 204 46.6
Eucgr.L03594 Eucalyptus grandis HOM05D006902 ORTHO05D008468 1.5e-27 127.1 167 58.7
Lj4g0003242 Lotus japonicus HOM05D006902 ORTHO05D008468 3.4e-27 125.9 187 53.5
MSTRG.14679 Avicennia marina HOM05D006902 ORTHO05D008468 9.9e-27 124.4 200 53.0
Duzib235G0611 Durio zibethinus HOM05D000306 ORTHO05D000410 6.4e-26 121.7 205 50.2
TPR.G32415 Trifolium pratense HOM05D006902 ORTHO05D008468 6.4e-26 121.7 177 55.9
Lalb_Chr16g0383411 Lupinus albus HOM05D006902 ORTHO05D008468 2.1e-24 116.7 187 53.5
Sabra04G0021000 Salix brachista HOM05D006902 ORTHO05D008468 2.7e-24 116.3 171 45.6
Ca_18489_v3 Cicer arietinum L. HOM05D006902 ORTHO05D008468 2.3e-23 113.2 182 54.4
Ca_29542_v3 Cicer arietinum L. HOM05D006902 ORTHO05D008468 2.3e-23 113.2 182 54.4
THA.LOC104809549 Tarenaya hassleriana HOM05D006902 ORTHO05D008468 2.3e-23 113.2 205 58.5
Psat7g109600 Pisum sativum HOM05D006902 ORTHO05D008468 3.0e-23 112.8 185 57.8
Oeu038228.1 Olea europaea HOM05D006902 ORTHO05D008468 8.7e-23 111.3 192 39.1
SalBow7G0974 Salvia bowleyana HOM05D006902 ORTHO05D008468 3.3e-22 109.4 159 54.1
Sp1g09900 Schrenkiella parvula HOM05D006902 ORTHO05D008468 3.3e-22 109.4 192 55.7
arahy.Tifrunner.gnm1.ann1.EL94R1 Arachis hypogaea HOM05D006902 ORTHO05D008468 1.2e-21 107.5 171 49.7
Aqoxy7G03119 Aquilegia oxysepala HOM05D006902 ORTHO05D008468 1.6e-21 107.1 207 45.4
HanXRQChr17g0551071 Helianthus annuus HOM05D006902 ORTHO05D008468 2.8e-21 106.3 164 56.7
Carub.0001s1082 Capsella rubella HOM05D006902 ORTHO05D008468 3.6e-21 105.9 192 55.2
FAN19G2227 Fragaria x ananassa HOM05D006902 ORTHO05D008468 4.7e-21 105.5 129 62.8
Nitab4.5_0003223g0030 Nicotiana tabacum HOM05D006902 ORTHO05D008468 4.7e-21 105.5 183 56.3
AT1G11240 Arabidopsis thaliana HOM05D006902 ORTHO05D008468 8.1e-21 104.8 186 53.8
FAN23G2525 Fragaria x ananassa HOM05D006902 ORTHO05D008468 8.1e-21 104.8 129 63.6
vmacro15868 Vaccinium macrocarpon HOM05D006902 ORTHO05D008468 1.1e-20 104.4 247 36.4
Cc02_g12510 Coffea canephora HOM05D006902 ORTHO05D008468 1.8e-20 103.6 198 56.1
Glyma.07G190800 Glycine max HOM05D006902 ORTHO05D008468 3.1e-20 102.8 164 52.4
FAN11G0740 Fragaria x ananassa HOM05D000306 ORTHO05D000410 4.0e-20 102.4 94 63.8
arahy.Tifrunner.gnm1.ann1.G41NRI Arachis hypogaea HOM05D006902 ORTHO05D008468 5.3e-20 102.1 171 48.5
FAN26G1405 Fragaria x ananassa HOM05D006902 ORTHO05D008468 6.9e-20 101.7 129 62.0
AUR62014725 Chenopodium quinoa HOM05D006902 ORTHO05D008468 2.0e-19 100.1 184 51.1
Glyma.08G058500 Glycine max HOM05D006902 ORTHO05D008468 2.0e-19 100.1 175 49.7
AL1G22260 Arabidopsis lyrata HOM05D006902 ORTHO05D008468 5.8e-19 98.6 194 54.1
VMungo0251G2276 Vigna mungo HOM05D006902 ORTHO05D008468 5.8e-19 98.6 164 50.6
ATR0580G203 Amborella trichopoda HOM05D006902 ORTHO05D008468 7.6e-19 98.2 196 39.8
Medtr4g090910 Medicago truncatula HOM05D006902 ORTHO05D008468 7.6e-19 98.2 184 51.6
AUR62016906 Chenopodium quinoa HOM05D006902 ORTHO05D008468 9.9e-19 97.8 196 49.5
Phvul.002G222700 Phaseolus vulgaris HOM05D006902 ORTHO05D008468 9.9e-19 97.8 164 50.6
EL10Ac8g20614 Beta vulgaris HOM05D006902 ORTHO05D008468 1.3e-18 97.4 186 51.1
CARHR011470 Cardamine hirsuta HOM05D006902 ORTHO05D008468 1.3e-18 97.4 184 56.0
COL.COLO4_31574 Corchorus olitorius HOM05D000306 ORTHO05D000410 1.3e-18 97.4 153 58.8
PGR004G1238 Punica granatum HOM05D006902 ORTHO05D008468 3.8e-18 95.9 172 52.3
Ah.14g088940 Amaranthus hybridus HOM05D006902 ORTHO05D008468 6.4e-18 95.1 193 48.7
Aa31LG1G3550 Aethionema arabicum HOM05D006902 ORTHO05D008468 8.4e-18 94.7 187 49.7
Ah.09g236070 Amaranthus hybridus HOM05D006902 ORTHO05D008468 8.4e-18 94.7 197 47.2
C05p09500 Brassica napus HOM05D006902 ORTHO05D008468 8.4e-18 94.7 192 51.0
BcaNung04470 Brassica carinata HOM05D006902 ORTHO05D008468 1.1e-17 94.4 190 48.9
ECA234G0685 Erigeron canadensis HOM05D006902 ORTHO05D008468 1.4e-17 94.0 188 51.1
BolC5t29692H Brassica oleracea HOM05D006902 ORTHO05D008468 4.2e-17 92.4 192 50.5
Cpa.g.sc27.115 Carica papaya HOM05D006902 ORTHO05D008468 5.4e-17 92.0 130 50.8
A06p07900 Brassica napus HOM05D006902 ORTHO05D008468 1.2e-16 90.9 192 51.6
BraA06t23989Z Brassica rapa HOM05D006902 ORTHO05D008468 1.2e-16 90.9 192 51.6
MD05G1325000 Malus domestica HOM05D006902 ORTHO05D008468 1.2e-16 90.9 73 67.1
Thhalv10008794m.g Eutrema salsugineum HOM05D006902 ORTHO05D008468 2.1e-16 90.1 182 54.9
Peaxi162Scf00371g01024 Petunia axillaris HOM05D006902 ORTHO05D008468 6.0e-16 88.6 174 44.3
SGA_v2.0_scaffold159G37666 Striga asiatica HOM05D006902 ORTHO05D008468 1.3e-15 87.4 166 48.8
Nitab4.5_0005936g0020 Nicotiana tabacum HOM05D006902 ORTHO05D008468 3.0e-15 86.3 176 48.3
Hund23624 Selenicereus undatus HOM05D006902 ORTHO05D008468 5.1e-15 85.5 105 62.9
unitig_8.g3353 Utricularia gibba HOM05D006902 ORTHO05D008468 2.6e-11 73.2 78 71.8
BolC8t49055H Brassica oleracea HOM05D006902 ORTHO05D008468 3.4e-11 72.8 206 44.2
Cpa.g.c36644 Carica papaya HOM05D006902 ORTHO05D008468 7.6e-11 71.6 63 82.5
TAR636G2458 Trochodendron aralioides HOM05D006902 ORTHO05D008468 4.9e-10 68.9 105 50.5
Os03g0353500 Oryza sativa ssp. japonica HOM05D006902 ORTHO05D008468 3.2e-09 66.2 207 37.2
SEGI_26187 Sequoiadendron giganteum HOM05D006902 ORTHO05D008468 3.2e-09 66.2 168 43.5
BcaC05g24999 Brassica carinata HOM05D006902 ORTHO05D008468 3.5e-08 62.8 87 63.2
BcaC07g38645 Brassica carinata HOM05D006902 ORTHO05D008468 6.0e-08 62.0 205 42.4
Nitab4.5_0003223g0040 Nicotiana tabacum HOM05D006902 ORTHO05D008468 1.0e-07 61.2 105 52.4
Thhalv10015657m.g Eutrema salsugineum HOM05D006902 ORTHO05D008468 1.3e-07 60.8 83 55.4
BcaC05g24986 Brassica carinata HOM05D006902 ORTHO05D008468 1.9e-06 57.0 134 41.8


User provided reference genes

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