Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G033800 Prunus persica HOM05D005121 ORTHO05D006115 3.2e-170 601.7 305 100.0
MD10G1305900 Malus domestica HOM05D005121 ORTHO05D006115 3.4e-156 555.1 305 88.9
MD05G1329000 Malus domestica HOM05D005121 ORTHO05D006115 1.7e-155 552.7 305 89.2
Ciclev10016069m.g Citrus clementina HOM05D005121 ORTHO05D006115 2.2e-150 535.8 305 87.5
Potri.011G040000 Populus trichocarpa HOM05D005121 ORTHO05D006115 2.4e-149 532.3 305 84.9
Nitab4.5_0005620g0020 Nicotiana tabacum HOM05D005121 ORTHO05D006115 9.1e-149 530.4 305 84.6
CsaV3_6G007300 Cucumis sativus L. HOM05D005121 ORTHO05D006115 1.2e-148 530.0 305 83.6
Nitab4.5_0000649g0190 Nicotiana tabacum HOM05D005121 ORTHO05D006115 1.2e-148 530.0 305 82.6
RcHm_v2.0_Chr5g0005701 Rosa chinensis HOM05D005121 ORTHO05D006115 1.2e-148 530.0 305 84.3
Sed0024430 Sechium edule HOM05D005121 ORTHO05D006115 1.5e-148 529.6 305 83.9
MELO3C022396.2 Cucumis melo HOM05D005121 ORTHO05D006115 2.0e-148 529.3 305 83.3
Potri.004G026800 Populus trichocarpa HOM05D005121 ORTHO05D006115 2.0e-148 529.3 305 84.3
TWI38G0490 Tripterygium wilfordii HOM05D005121 ORTHO05D006115 2.0e-148 529.3 305 85.2
Peaxi162Scf01152g00110 Petunia axillaris HOM05D005121 ORTHO05D006115 3.4e-148 528.5 305 83.9
CAN.G424.38 Capsicum annuum HOM05D005121 ORTHO05D006115 7.7e-148 527.3 305 82.0
Eucgr.D00772 Eucalyptus grandis HOM05D005121 ORTHO05D006115 7.7e-148 527.3 305 85.2
Gohir.D10G019900 Gossypium hirsutum HOM05D005121 ORTHO05D006115 7.7e-148 527.3 305 83.6
GSVIVG01003678001 Vitis vinifera HOM05D005121 ORTHO05D006115 7.7e-148 527.3 305 83.6
ClCG06G001360 Citrullus lanatus HOM05D005121 ORTHO05D006115 2.2e-147 525.8 305 83.0
Cc06_g18220 Coffea canephora HOM05D005121 ORTHO05D006115 2.2e-147 525.8 305 82.6
Thecc.06G202500 Theobroma cacao HOM05D005121 ORTHO05D006115 2.2e-147 525.8 305 83.3
Duzib160G0488 Durio zibethinus HOM05D005121 ORTHO05D006115 2.9e-147 525.4 305 84.6
Duzib235G0052 Durio zibethinus HOM05D005121 ORTHO05D006115 2.9e-147 525.4 305 86.6
QL05p080508 Quercus lobata HOM05D005121 ORTHO05D006115 3.8e-147 525.0 304 85.2
HanXRQChr12g0359441 Helianthus annuus HOM05D005121 ORTHO05D006115 5.0e-147 524.6 305 82.3
Ca_00225_v3 Cicer arietinum L. HOM05D005121 ORTHO05D006115 6.5e-147 524.2 305 85.2
FvH4_3g03660 Fragaria vesca HOM05D005121 ORTHO05D006115 6.5e-147 524.2 305 83.3
FAN25G2418 Fragaria x ananassa HOM05D005121 ORTHO05D006115 6.5e-147 524.2 305 83.3
Sabra11G0027500 Salix brachista HOM05D005121 ORTHO05D006115 6.5e-147 524.2 305 83.9
Dinv18977 Davidia involucrata HOM05D005121 ORTHO05D006115 8.5e-147 523.9 305 85.9
MELO3C013201.2 Cucumis melo HOM05D005121 ORTHO05D006115 1.1e-146 523.5 305 83.0
Gorai.011G021100 Gossypium raimondii HOM05D005121 ORTHO05D006115 1.4e-146 523.1 305 85.9
Phvul.006G193700 Phaseolus vulgaris HOM05D005121 ORTHO05D006115 1.4e-146 523.1 305 85.6
FAN21G3866 Fragaria x ananassa HOM05D005121 ORTHO05D006115 1.9e-146 522.7 305 82.6
CANSAT56G0975 Cannabis sativa HOM05D005121 ORTHO05D006115 3.2e-146 521.9 305 84.3
COL.COLO4_31636 Corchorus olitorius HOM05D005121 ORTHO05D006115 3.2e-146 521.9 305 85.6
TWI63G0506 Tripterygium wilfordii HOM05D005121 ORTHO05D006115 3.2e-146 521.9 305 83.0
CsaV3_7G021490 Cucumis sativus L. HOM05D005121 ORTHO05D006115 4.2e-146 521.5 305 82.3
arahy.Tifrunner.gnm1.ann1.XU4W4S Arachis hypogaea HOM05D005121 ORTHO05D006115 5.5e-146 521.2 305 84.9
Gohir.A10G019000 Gossypium hirsutum HOM05D005121 ORTHO05D006115 5.5e-146 521.2 305 85.9
PGSC0003DMG400022347 Solanum tuberosum HOM05D005121 ORTHO05D006115 9.4e-146 520.4 305 83.3
arahy.Tifrunner.gnm1.ann1.ANU5MI Arachis hypogaea HOM05D005121 ORTHO05D006115 1.2e-145 520.0 305 84.9
ClCG09G021600 Citrullus lanatus HOM05D005121 ORTHO05D006115 1.2e-145 520.0 305 81.6
Manes.16G019177 Manihot esculenta HOM05D005121 ORTHO05D006115 1.2e-145 520.0 301 86.4
arahy.Tifrunner.gnm1.ann1.FY8LHX Arachis hypogaea HOM05D005121 ORTHO05D006115 1.6e-145 519.6 305 84.6
Actinidia24048 Actinidia chinensis HOM05D005121 ORTHO05D006115 2.1e-145 519.2 305 81.6
Manes.17G032800 Manihot esculenta HOM05D005121 ORTHO05D006115 2.1e-145 519.2 301 86.4
Medtr2g011480 Medicago truncatula HOM05D005121 ORTHO05D006115 2.1e-145 519.2 305 84.6
Sopen02g024200 Solanum pennellii HOM05D005121 ORTHO05D006115 2.1e-145 519.2 305 83.0
VMungo0540G0293 Vigna mungo HOM05D005121 ORTHO05D006115 2.1e-145 519.2 305 84.6
Glyma.13G247800 Glycine max HOM05D005121 ORTHO05D006115 2.7e-145 518.8 305 84.9
Lalb_Chr18g0060031 Lupinus albus HOM05D005121 ORTHO05D006115 2.7e-145 518.8 305 84.6
Solyc02g079400.3 Solanum lycopersicum HOM05D005121 ORTHO05D006115 3.6e-145 518.5 305 83.0
Rhsim02G0118100 Rhododendron simsii HOM05D005121 ORTHO05D006115 4.7e-145 518.1 305 83.6
FAN16G2329 Fragaria x ananassa HOM05D005121 ORTHO05D006115 6.1e-145 517.7 302 83.1
Lj6g0004146 Lotus japonicus HOM05D005121 ORTHO05D006115 7.9e-145 517.3 305 81.3
ECA234G4718 Erigeron canadensis HOM05D005121 ORTHO05D006115 1.0e-144 516.9 305 82.0
CiPaw.10G115700 Carya illinoinensis HOM05D005121 ORTHO05D006115 1.4e-144 516.5 305 81.3
Glyma.15G066000 Glycine max HOM05D005121 ORTHO05D006115 1.4e-144 516.5 305 84.9
Oeu027963.1 Olea europaea HOM05D005121 ORTHO05D006115 2.3e-144 515.8 305 83.6
PGR031G1397 Punica granatum HOM05D005121 ORTHO05D006115 2.3e-144 515.8 305 83.9
TAR627G0857 Trochodendron aralioides HOM05D005121 ORTHO05D006115 2.3e-144 515.8 305 83.6
DCAR_004161 Daucus carota HOM05D005121 ORTHO05D006115 5.2e-144 514.6 305 80.0
Lj1A1216T23 Lonicera japonica HOM05D005121 ORTHO05D006115 6.7e-144 514.2 307 80.5
Psat1g209560 Pisum sativum HOM05D005121 ORTHO05D006115 1.5e-143 513.1 305 83.0
TPR.G19604 Trifolium pratense HOM05D005121 ORTHO05D006115 1.5e-143 513.1 305 80.7
MSTRG.7276 Avicennia marina HOM05D005121 ORTHO05D006115 2.0e-143 512.7 305 82.0
Nn1g06832 Nelumbo nucifera HOM05D005121 ORTHO05D006115 2.0e-143 512.7 305 83.6
CSS0043949 Camellia sinensis var. sinensis HOM05D005121 ORTHO05D006115 2.6e-143 512.3 305 82.3
Aqoxy7G03433 Aquilegia oxysepala HOM05D005121 ORTHO05D006115 3.3e-143 511.9 305 82.3
PSO210G2069 Papaver somniferum HOM05D005121 ORTHO05D006115 3.3e-143 511.9 305 81.0
unitig_26.g9381 Utricularia gibba HOM05D005121 ORTHO05D006115 4.4e-143 511.5 305 80.3
CSS0003935 Camellia sinensis var. sinensis HOM05D005121 ORTHO05D006115 5.7e-143 511.1 305 82.0
FAN11G1262 Fragaria x ananassa HOM05D005121 ORTHO05D006115 9.7e-143 510.4 330 77.0
Lsat_1_v5_gn_5_78441 Lactuca sativa HOM05D005121 ORTHO05D006115 2.2e-142 509.2 305 79.7
DCAR_008096 Daucus carota HOM05D005121 ORTHO05D006115 1.1e-141 506.9 305 80.7
Migut.M01229 Erythranthe guttata HOM05D005121 ORTHO05D006115 1.1e-141 506.9 305 83.3
AUR62012514 Chenopodium quinoa HOM05D005121 ORTHO05D006115 1.8e-141 506.1 305 80.3
AUR62014685 Chenopodium quinoa HOM05D005121 ORTHO05D006115 2.4e-141 505.8 305 80.0
Oeu030047.2 Olea europaea HOM05D005121 ORTHO05D006115 2.4e-141 505.8 326 78.2
THA.LOC104809541 Tarenaya hassleriana HOM05D005121 ORTHO05D006115 5.9e-140 501.1 307 82.7
SGA_v2.0_scaffold114G31993 Striga asiatica HOM05D005121 ORTHO05D006115 1.7e-139 499.6 308 79.5
Cfa000313 Carpinus fangiana HOM05D005121 ORTHO05D006115 1.9e-138 496.1 300 81.3
Sabra04G0015300 Salix brachista HOM05D005121 ORTHO05D006115 9.4e-138 493.8 372 68.8
Hund21294 Selenicereus undatus HOM05D005121 ORTHO05D006115 9.4e-138 493.8 303 80.9
EL10Ac6g14131 Beta vulgaris HOM05D005121 ORTHO05D006115 1.4e-136 490.0 305 78.4
ATR1132G047 Amborella trichopoda HOM05D005121 ORTHO05D006115 3.0e-136 488.8 305 79.0
CARHR011610 Cardamine hirsuta HOM05D005121 ORTHO05D006115 8.8e-136 487.3 309 79.9
CDE02G1411 Ceratophyllum demersum HOM05D005121 ORTHO05D006115 9.7e-135 483.8 305 78.0
CARHR050750 Cardamine hirsuta HOM05D005121 ORTHO05D006115 3.7e-134 481.9 312 75.6
Carub.0002s0357 Capsella rubella HOM05D005121 ORTHO05D006115 8.2e-134 480.7 312 76.9
CDE05G3522 Ceratophyllum demersum HOM05D005121 ORTHO05D006115 1.1e-133 480.3 305 78.4
Sc24g0000680 Simmondsia chinensis HOM05D005121 ORTHO05D006115 2.4e-133 479.2 307 77.9
Aa31LG2G9240 Aethionema arabicum HOM05D005121 ORTHO05D006115 4.1e-133 478.4 310 76.1
AL2G14620 Arabidopsis lyrata HOM05D005121 ORTHO05D006115 2.7e-132 475.7 312 74.7
AT1G61620 Arabidopsis thaliana HOM05D005121 ORTHO05D006115 1.0e-131 473.8 312 76.0
Os03g0279900 Oryza sativa ssp. japonica HOM05D005121 ORTHO05D006115 1.3e-131 473.4 303 72.9
Sp2g02960 Schrenkiella parvula HOM05D005121 ORTHO05D006115 6.5e-131 471.1 310 74.2
A01p30380 Brassica napus HOM05D005121 ORTHO05D006115 1.1e-130 470.3 306 74.2
C01p38590 Brassica napus HOM05D005121 ORTHO05D006115 1.1e-130 470.3 306 74.2
BraA01t03171Z Brassica rapa HOM05D005121 ORTHO05D006115 1.1e-130 470.3 306 74.2
Thhalv10023604m.g Eutrema salsugineum HOM05D005121 ORTHO05D006115 1.5e-130 469.9 312 73.7
BcaC06g31855 Brassica carinata HOM05D005121 ORTHO05D006115 7.2e-130 467.6 306 73.9
Zm00001eb012710 Zea mays HOM05D005121 ORTHO05D006115 3.6e-129 465.3 303 75.6
Haze_06613 Corylus avellana HOM05D005121 ORTHO05D006115 4.4e-127 458.4 388 62.4
Zm00001eb397440 Zea mays HOM05D005121 ORTHO05D006115 1.7e-126 456.4 305 75.1
Zm00001eb397450 Zea mays HOM05D005121 ORTHO05D006115 3.7e-126 455.3 304 73.4
Zm00001eb397460 Zea mays HOM05D005121 ORTHO05D006115 3.7e-126 455.3 304 73.4
Zm00001eb397470 Zea mays HOM05D005121 ORTHO05D006115 2.4e-125 452.6 304 72.7
Zm00001eb397480 Zea mays HOM05D005121 ORTHO05D006115 1.6e-124 449.9 304 72.7
Mapoly0029s0083 Marchantia polymorpha HOM05D005121 ORTHO05D006115 1.8e-117 426.4 306 67.0
Pp3c9_6940 Physcomitrium patens HOM05D005121 ORTHO05D006115 9.2e-117 424.1 304 67.1
unitig_749.g13632 Utricularia gibba HOM05D005121 ORTHO05D006115 1.0e-115 420.6 305 71.5
Migut.H01530 Erythranthe guttata HOM05D005121 ORTHO05D006115 1.3e-115 420.2 300 68.3
Pp3c15_12040 Physcomitrium patens HOM05D005121 ORTHO05D006115 5.6e-114 414.8 304 65.5
Atru.chr10.2037 Acer truncatum HOM05D005121 ORTHO05D006115 6.8e-112 407.9 235 86.4
Actinidia11821 Actinidia chinensis HOM05D005121 ORTHO05D006115 2.4e-109 399.4 246 82.9
AagrBONN_evm.TU.Sc2ySwM_344.3296 Anthoceros agrestis HOM05D005121 ORTHO05D006115 3.9e-107 392.1 303 63.4
SMO147G0402 Selaginella moellendorffii HOM05D005121 ORTHO05D006115 6.6e-107 391.3 302 62.3
Peaxi162Scf00047g00710 Petunia axillaris HOM05D001486 ORTHO05D004921 4.6e-100 368.6 225 80.0
CBR_g4035 Chara braunii HOM05D005121 ORTHO05D006115 6.0e-100 368.2 309 58.9
vmacro15854 Vaccinium macrocarpon HOM05D005121 ORTHO05D006115 7.5e-95 351.3 225 79.6
Ah.09g236300 Amaranthus hybridus HOM05D005121 ORTHO05D006115 3.3e-90 335.9 228 78.5
HPP92_010075 Vanilla planifolia HOM05D005121 ORTHO05D006115 3.4e-87 325.9 207 75.4
Peaxi162Scf01035g00217 Petunia axillaris HOM05D005121 ORTHO05D006115 1.2e-68 264.2 181 74.0
HanXRQChr10g0310231 Helianthus annuus HOM05D005121 ORTHO05D006115 6.0e-68 261.9 190 71.1
Cpa.g.sc27.158 Carica papaya HOM05D005121 ORTHO05D006115 1.5e-63 247.3 143 81.8
BcaB04g20348 Brassica carinata HOM05D005121 ORTHO05D006115 1.9e-61 240.4 149 74.5
BcaB04g20349 Brassica carinata HOM05D005121 ORTHO05D006115 5.6e-58 228.8 154 73.4
Sed0008986 Sechium edule HOM05D005121 ORTHO05D006115 1.7e-54 217.2 300 46.3
Zm00001eb396290 Zea mays HOM05D005121 ORTHO05D006115 2.2e-54 216.9 153 68.0
CARHR260990 Cardamine hirsuta HOM05D005121 ORTHO05D006115 1.3e-38 164.5 125 65.6
MCO09G390 Micromonas commoda HOM05D005121 ORTHO05D006115 2.9e-38 163.3 303 35.3
Peaxi162Scf00047g00079 Petunia axillaris HOM05D005121 ORTHO05D006115 3.8e-38 162.9 83 85.5
vmacro15853 Vaccinium macrocarpon HOM05D005121 ORTHO05D006115 8.5e-38 161.8 80 91.2
ATR1132G008 Amborella trichopoda HOM05D005121 ORTHO05D006115 3.2e-37 159.8 89 80.9
SHI00053 Sapria himalayana HOM05D005121 ORTHO05D006115 9.4e-37 158.3 136 55.9
Ah.09g236480 Amaranthus hybridus HOM05D005121 ORTHO05D006115 1.2e-36 157.9 79 88.6
BolC1t03821H Brassica oleracea HOM05D005121 ORTHO05D006115 2.1e-36 157.1 80 86.2
Ah.14g088780 Amaranthus hybridus HOM05D005121 ORTHO05D006115 2.6e-34 150.2 203 45.8
Cre02.g142086 Chlamydomonas reinhardtii HOM05D005121 ORTHO05D006115 6.3e-33 145.6 305 34.1
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 5.5e-29 132.5 79 78.5
Hma1.2p1_0155F.1_g068340 Hydrangea macrophylla HOM05D005121 ORTHO05D006115 6.3e-25 119.0 76 72.4
Atru.chr10.2036 Acer truncatum HOM05D005121 ORTHO05D006115 2.0e-23 114.0 60 88.3
Lj6g0012970 Lotus japonicus HOM05D003951 ORTHO05D006115 3.5e-23 113.2 58 86.2
SGA_v2.0_scaffold7G03907 Striga asiatica HOM05D005121 ORTHO05D006115 7.2e-21 105.5 64 78.1
PRCOL_00001084 Prasinoderma coloniale HOM05D005121 ORTHO05D006115 3.0e-19 100.1 295 32.9
TAR626G1242 Trochodendron aralioides HOM05D005121 ORTHO05D006115 1.3e-14 84.7 69 75.4
Cfa022197 Carpinus fangiana HOM05D005121 ORTHO05D006115 6.8e-11 72.4 237 26.6


User provided reference genes

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