Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G030000 Prunus persica HOM05D005409 ORTHO05D006456 0.0e+00 1225.7 623 100.0
MD05G1335400 Malus domestica HOM05D005409 ORTHO05D006456 7.0e-281 970.3 624 81.2
MD10G1310800 Malus domestica HOM05D005409 ORTHO05D006456 1.3e-271 939.5 628 79.5
FAN25G1204 Fragaria x ananassa HOM05D005409 ORTHO05D006456 1.3e-263 912.9 664 73.8
Cfa016400 Carpinus fangiana HOM05D005409 ORTHO05D006456 4.2e-225 785.0 633 66.5
CiPaw.10G113200 Carya illinoinensis HOM05D005409 ORTHO05D006456 1.2e-203 713.8 631 61.5
Duzib192G0995 Durio zibethinus HOM05D005409 ORTHO05D006456 8.5e-202 707.6 633 62.7
Thecc.06G207400 Theobroma cacao HOM05D005409 ORTHO05D006456 3.9e-199 698.7 631 62.1
QL05p077347 Quercus lobata HOM05D005409 ORTHO05D006456 2.0e-195 686.4 684 57.3
Gohir.D09G070300 Gossypium hirsutum HOM05D005409 ORTHO05D006456 7.2e-193 677.9 634 60.6
Gorai.006G084700 Gossypium raimondii HOM05D005409 ORTHO05D006456 7.9e-192 674.5 641 60.1
Duzib235G0390 Durio zibethinus HOM05D005409 ORTHO05D006456 1.4e-191 673.7 644 59.2
Dinv18952 Davidia involucrata HOM05D005409 ORTHO05D006456 1.3e-189 667.2 656 58.1
Ciclev10014614m.g Citrus clementina HOM05D005409 ORTHO05D006456 2.8e-189 666.0 629 58.5
CiPaw.10G113100 Carya illinoinensis HOM05D005409 ORTHO05D006456 4.8e-189 665.2 631 58.5
Gohir.A09G070200 Gossypium hirsutum HOM05D005409 ORTHO05D006456 1.1e-188 664.1 633 60.2
COL.COLO4_33645 Corchorus olitorius HOM05D005409 ORTHO05D006456 2.0e-187 659.8 632 60.8
CANSAT35G0463 Cannabis sativa HOM05D005409 ORTHO05D006456 4.5e-187 658.7 629 59.9
Glyma.07G187300 Glycine max HOM05D005409 ORTHO05D006456 5.9e-187 658.3 632 58.1
Manes.17G030300 Manihot esculenta HOM05D005409 ORTHO05D006456 5.5e-185 651.7 632 57.3
Gohir.D10G017400 Gossypium hirsutum HOM05D005409 ORTHO05D006456 9.4e-185 651.0 630 60.3
Gorai.011G019300 Gossypium raimondii HOM05D005409 ORTHO05D006456 9.4e-185 651.0 630 60.3
Glyma.08G061800 Glycine max HOM05D005409 ORTHO05D006456 1.2e-184 650.6 633 57.2
FvH4_3g03030 Fragaria vesca HOM05D005409 ORTHO05D006456 6.1e-184 648.3 493 70.4
Phvul.002G218900 Phaseolus vulgaris HOM05D005409 ORTHO05D006456 1.8e-183 646.7 633 58.1
CsaV3_1G011380 Cucumis sativus L. HOM05D005409 ORTHO05D006456 4.4e-182 642.1 630 58.4
Gohir.A10G017200 Gossypium hirsutum HOM05D005409 ORTHO05D006456 2.8e-181 639.4 629 59.8
ClCG03G005190 Citrullus lanatus HOM05D005409 ORTHO05D006456 2.7e-179 632.9 628 57.2
TAR624G1144 Trochodendron aralioides HOM05D005409 ORTHO05D006456 5.9e-179 631.7 639 55.7
Lj4g0002185 Lotus japonicus HOM05D005409 ORTHO05D006456 1.3e-178 630.6 637 57.3
TWI63G1109 Tripterygium wilfordii HOM05D005409 ORTHO05D006456 5.5e-177 625.2 645 55.0
VMungo0251G1750 Vigna mungo HOM05D005409 ORTHO05D006456 5.5e-177 625.2 641 56.0
Ca_18454_v3 Cicer arietinum L. HOM05D005409 ORTHO05D006456 3.6e-176 622.5 637 57.8
MELO3C002515.2 Cucumis melo HOM05D005409 ORTHO05D006456 8.8e-175 617.8 630 57.0
RcHm_v2.0_Chr5g0004681 Rosa chinensis HOM05D005409 ORTHO05D006456 1.8e-172 610.1 475 69.7
Sed0006411 Sechium edule HOM05D005409 ORTHO05D006456 3.2e-169 599.4 629 56.4
Lalb_Chr09g0327161 Lupinus albus HOM05D005409 ORTHO05D006456 1.2e-168 597.4 630 57.0
Nn1g06923 Nelumbo nucifera HOM05D005409 ORTHO05D006456 2.6e-166 589.7 639 53.8
TPR.G13934 Trifolium pratense HOM05D005409 ORTHO05D006456 6.3e-165 585.1 640 55.6
Lalb_Chr16g0383301 Lupinus albus HOM05D005409 ORTHO05D006456 7.0e-164 581.6 628 54.3
Psat0s935g0040 Pisum sativum HOM05D005409 ORTHO05D006456 1.6e-163 580.5 642 54.4
TAR626G0140 Trochodendron aralioides HOM05D005409 ORTHO05D006456 1.7e-162 577.0 637 52.6
Cc02_g11840 Coffea canephora HOM05D005409 ORTHO05D006456 3.0e-159 566.2 652 51.4
Medtr4g092050 Medicago truncatula HOM05D005409 ORTHO05D006456 2.9e-157 559.7 636 54.4
Actinidia11830 Actinidia chinensis HOM05D005409 ORTHO05D006456 3.2e-156 556.2 655 51.1
Lj2A276T57 Lonicera japonica HOM05D005409 ORTHO05D006456 8.6e-154 548.1 654 52.0
Solyc02g079880.3 Solanum lycopersicum HOM05D005409 ORTHO05D006456 8.6e-154 548.1 645 50.7
Sc17g0006920 Simmondsia chinensis HOM05D005409 ORTHO05D006456 2.5e-153 546.6 627 51.5
Hund23539 Selenicereus undatus HOM05D005409 ORTHO05D006456 4.3e-153 545.8 641 51.5
PGSC0003DMG400021722 Solanum tuberosum HOM05D005409 ORTHO05D006456 7.3e-153 545.0 646 50.5
Nitab4.5_0006456g0010 Nicotiana tabacum HOM05D005409 ORTHO05D006456 9.5e-153 544.7 648 51.1
Nitab4.5_0000503g0080 Nicotiana tabacum HOM05D005409 ORTHO05D006456 4.7e-152 542.3 650 51.4
Sopen02g024640 Solanum pennellii HOM05D005409 ORTHO05D006456 8.9e-151 538.1 648 50.3
Peaxi162Scf00759g00211 Petunia axillaris HOM05D005409 ORTHO05D006456 1.2e-150 537.7 648 51.4
Haze_06671 Corylus avellana HOM05D005409 ORTHO05D006456 5.8e-150 535.4 439 64.7
Hma1.2p1_0809F.1_g221770 Hydrangea macrophylla HOM05D005409 ORTHO05D006456 8.3e-149 531.6 651 50.4
TWI38G0167 Tripterygium wilfordii HOM05D005409 ORTHO05D006456 4.1e-148 529.3 591 53.1
Rhsim02G0115600 Rhododendron simsii HOM05D005409 ORTHO05D006456 1.7e-146 523.9 700 49.3
Potri.011G031900 Populus trichocarpa HOM05D005409 ORTHO05D006456 3.3e-145 519.6 632 50.8
MSTRG.15953 Avicennia marina HOM05D005409 ORTHO05D006456 1.2e-144 517.7 649 49.8
GSVIVG01006401001 Vitis vinifera HOM05D005409 ORTHO05D006456 1.2e-144 517.7 654 49.2
Eucgr.E03596 Eucalyptus grandis HOM05D005409 ORTHO05D006456 2.3e-143 513.5 541 52.5
EL10As6g23684 Beta vulgaris HOM05D005409 ORTHO05D006456 1.2e-142 511.1 654 50.2
vmacro15844 Vaccinium macrocarpon HOM05D005409 ORTHO05D006456 1.3e-141 507.7 663 48.7
AUR62012574 Chenopodium quinoa HOM05D005409 ORTHO05D006456 5.1e-138 495.7 651 48.2
Sabra11G0025100 Salix brachista HOM05D005409 ORTHO05D006456 8.1e-136 488.4 629 48.8
PGR042G2399 Punica granatum HOM05D005409 ORTHO05D006456 1.8e-135 487.3 633 49.8
Lj1A1221T57 Lonicera japonica HOM05D005409 ORTHO05D006456 3.1e-135 486.5 627 48.6
ECA236G3644 Erigeron canadensis HOM05D005409 ORTHO05D006456 4.0e-135 486.1 638 49.2
Ah.14g088510 Amaranthus hybridus HOM05D005409 ORTHO05D006456 1.5e-134 484.2 653 48.1
Oeu016146.1 Olea europaea HOM05D005409 ORTHO05D006456 2.0e-134 483.8 645 47.6
AUR62014626 Chenopodium quinoa HOM05D005409 ORTHO05D006456 4.1e-132 476.1 651 47.5
Aqoxy1G03830 Aquilegia oxysepala HOM05D005409 ORTHO05D006456 2.7e-131 473.4 675 46.7
DCAR_008109 Daucus carota HOM05D005409 ORTHO05D006456 2.5e-129 466.8 630 48.3
PSO675G2591 Papaver somniferum HOM05D005409 ORTHO05D006456 4.4e-126 456.1 654 46.9
PSO541G2946 Papaver somniferum HOM05D005409 ORTHO05D006456 5.8e-126 455.7 654 46.9
CSS0017238 Camellia sinensis var. sinensis HOM05D005409 ORTHO05D006456 7.1e-124 448.7 633 46.9
MBI02_g26225_MAGBIO Magnolia biondii HOM05D005409 ORTHO05D006456 1.2e-123 448.0 655 48.5
HanXRQChr15g0482781 Helianthus annuus HOM05D005409 ORTHO05D006456 2.7e-123 446.8 649 46.2
Hma1.2p1_0809F.1_g221760 Hydrangea macrophylla HOM05D005409 ORTHO05D006456 1.0e-122 444.9 536 50.0
HanXRQChr15g0482771 Helianthus annuus HOM05D005409 ORTHO05D006456 6.6e-122 442.2 649 46.4
Sabra11G0019200 Salix brachista HOM05D005409 ORTHO05D006456 4.3e-121 439.5 629 45.8
THA.LOC104809524 Tarenaya hassleriana HOM05D005409 ORTHO05D006456 1.8e-119 434.1 639 46.5
Actinidia26760 Actinidia chinensis HOM05D005409 ORTHO05D006456 4.0e-119 433.0 532 48.1
Migut.M01258 Erythranthe guttata HOM05D005409 ORTHO05D006456 2.0e-118 430.6 652 47.1
Actinidia24044 Actinidia chinensis HOM05D005409 ORTHO05D006456 1.4e-116 424.5 487 50.5
Cpa.g.sc81.2 Carica papaya HOM05D005409 ORTHO05D006456 2.4e-116 423.7 438 55.7
Oeu050809.4 Olea europaea HOM05D005409 ORTHO05D006456 3.2e-116 423.3 655 42.3
DCAR_004174 Daucus carota HOM05D005409 ORTHO05D006456 5.4e-116 422.5 616 46.8
Lsat_1_v5_gn_7_18380 Lactuca sativa HOM05D005409 ORTHO05D006456 6.7e-114 415.6 636 44.8
arahy.Tifrunner.gnm1.ann1.XK38U2 Arachis hypogaea HOM05D005409 ORTHO05D006456 2.5e-113 413.7 640 45.9
GSVIVG01030650001 Vitis vinifera HOM05D005409 ORTHO05D006456 7.4e-113 412.1 630 43.7
arahy.Tifrunner.gnm1.ann1.QZ9QK3 Arachis hypogaea HOM05D005409 ORTHO05D006456 3.0e-106 390.2 680 42.9
Sp1g10100 Schrenkiella parvula HOM05D005409 ORTHO05D006456 4.3e-105 386.3 636 43.6
AT1G11480 Arabidopsis thaliana HOM05D005409 ORTHO05D006456 4.8e-104 382.9 636 44.2
Potri.007G119200 Populus trichocarpa HOM05D005409 ORTHO05D006456 2.6e-102 377.1 656 41.9
A06p08100 Brassica napus HOM05D005409 ORTHO05D006456 8.4e-101 372.1 637 43.8
Thhalv10007161m.g Eutrema salsugineum HOM05D005409 ORTHO05D006456 1.2e-99 368.2 637 43.2
CARHR011750 Cardamine hirsuta HOM05D005409 ORTHO05D006456 2.7e-99 367.1 631 42.2
THA.LOC104818924 Tarenaya hassleriana HOM05D005409 ORTHO05D006456 3.5e-99 366.7 598 43.6
Aa31LG1G3270 Aethionema arabicum HOM05D005409 ORTHO05D006456 6.0e-99 365.9 651 42.1
BraA06t24009Z Brassica rapa HOM05D005409 ORTHO05D006456 2.3e-98 364.0 629 43.2
Sabra17G0028000 Salix brachista HOM05D005409 ORTHO05D006456 1.1e-97 361.7 712 39.6
Carub.0001s1109 Capsella rubella HOM05D005409 ORTHO05D006456 7.4e-97 359.0 624 40.9
CDE01G0308 Ceratophyllum demersum HOM05D005409 ORTHO05D006456 1.3e-96 358.2 636 40.6
AL1G22590 Arabidopsis lyrata HOM05D005409 ORTHO05D006456 2.1e-96 357.5 634 43.2
C05p09680 Brassica napus HOM05D005409 ORTHO05D006456 1.5e-94 351.3 638 42.8
BcaC05g25024 Brassica carinata HOM05D005409 ORTHO05D006456 2.6e-94 350.5 638 43.1
SGA_v2.0_scaffold7G03896 Striga asiatica HOM05D005409 ORTHO05D006456 4.5e-94 349.7 697 38.6
Potri.017G041300 Populus trichocarpa HOM05D005409 ORTHO05D006456 7.6e-94 349.0 641 41.5
CDE12G0800 Ceratophyllum demersum HOM05D005409 ORTHO05D006456 1.3e-93 348.2 521 44.3
Actinidia26959 Actinidia chinensis HOM05D005409 ORTHO05D006456 1.1e-92 345.1 474 45.6
BolC5t29709H Brassica oleracea HOM05D005409 ORTHO05D006456 1.6e-91 341.3 622 42.4
SalBow8G4343 Salvia bowleyana HOM05D005409 ORTHO05D006456 7.9e-91 339.0 467 45.4
Sabra07G0096100 Salix brachista HOM05D005409 ORTHO05D006456 1.1e-89 335.1 763 36.3
Atru.chr10.2048 Acer truncatum HOM05D005409 ORTHO05D006456 1.4e-84 318.2 357 52.4
HPP92_000870 Vanilla planifolia HOM05D005409 ORTHO05D006456 1.6e-75 288.1 658 38.3
Oeu050499.1 Olea europaea HOM05D005409 ORTHO05D006456 1.0e-74 285.4 438 42.2
BcaNung07116 Brassica carinata HOM05D005409 ORTHO05D006456 2.9e-69 267.3 439 43.7
RcHm_v2.0_Chr5g0004671 Rosa chinensis HOM05D005409 ORTHO05D006456 1.9e-68 264.6 143 88.8
Atru.chr6.3116 Acer truncatum HOM05D005409 ORTHO05D006456 3.6e-67 260.4 471 41.4
Ah.09g237100 Amaranthus hybridus HOM05D000067 ORTHO05D006456 1.8e-58 231.5 630 33.5
GSVIVG01006635001 Vitis vinifera HOM05D005409 ORTHO05D006456 1.3e-56 225.3 162 69.8
Os07g0546100 Oryza sativa ssp. japonica HOM05D005409 ORTHO05D006456 4.8e-56 223.4 647 34.3
ATR0804G077 Amborella trichopoda HOM05D005409 ORTHO05D006456 7.0e-55 219.5 724 34.1
Cpa.g.sc81.1 Carica papaya HOM05D005409 ORTHO05D006456 4.4e-49 200.3 191 62.3
Atru.chr10.2047 Acer truncatum HOM05D005409 ORTHO05D006456 2.8e-48 197.6 254 48.4
Zm00001eb323520 Zea mays HOM05D005409 ORTHO05D006456 1.8e-47 194.9 646 32.7
Haze_06667 Corylus avellana HOM05D005409 ORTHO05D006456 3.1e-34 151.0 182 49.5
SMO118G0050 Selaginella moellendorffii HOM05D005409 ORTHO05D006456 8.1e-27 126.3 723 26.7
Zm00001eb106500 Zea mays HOM05D005409 ORTHO05D006456 1.5e-25 122.1 432 31.2
QL05p012359 Quercus lobata HOM05D005409 ORTHO05D006456 6.0e-22 110.2 117 51.3
Mapoly0113s0049 Marchantia polymorpha HOM05D005409 ORTHO05D006456 3.0e-21 107.8 1008 25.0
AagrBONN_evm.TU.Sc2ySwM_228.455 Anthoceros agrestis HOM05D005409 ORTHO05D006456 2.1e-19 101.7 133 46.6
Pp3c20_3440 Physcomitrium patens HOM05D005409 ORTHO05D006456 6.8e-18 96.7 108 53.7
Atru.chr6.3115 Acer truncatum HOM05D005409 ORTHO05D006456 1.3e-16 92.4 191 38.2
Actinidia26960 Actinidia chinensis HOM05D005409 ORTHO05D006456 2.3e-13 81.6 85 55.3
CBR_g36658 Chara braunii HOM05D005409 ORTHO05D006456 1.8e-10 72.0 121 40.5
SEGI_29006 Sequoiadendron giganteum HOM05D005409 ORTHO05D006456 1.2e-09 69.3 252 33.7
Nn5g30945 Nelumbo nucifera HOM05D005409 ORTHO05D006456 2.7e-06 58.2 45 57.8


User provided reference genes

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