Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G023900 Prunus persica HOM05D004992 ORTHO05D006004 1.8e-60 235.7 118 100.0
RcHm_v2.0_Chr5g0003701 Rosa chinensis HOM05D004992 ORTHO05D006004 1.9e-38 162.5 118 71.2
FvH4_3g02450 Fragaria vesca HOM05D004992 ORTHO05D006004 8.1e-37 157.1 119 71.4
FAN21G0406 Fragaria x ananassa HOM05D004992 ORTHO05D006004 5.2e-36 154.5 119 69.7
Cfa000249 Carpinus fangiana HOM05D004992 ORTHO05D006004 1.2e-35 153.3 113 68.1
Haze_06774 Corylus avellana HOM05D003428 ORTHO05D004131 1.5e-35 152.9 113 68.1
GSVIVG01012656001 Vitis vinifera HOM05D004992 ORTHO05D006004 1.5e-35 152.9 115 67.8
FAN25G3450 Fragaria x ananassa HOM05D004992 ORTHO05D006004 4.4e-35 151.4 119 70.6
CiPaw.09G089400 Carya illinoinensis HOM05D004992 ORTHO05D006004 8.4e-34 147.1 113 66.4
Potri.004G018600 Populus trichocarpa HOM05D004992 ORTHO05D006004 2.4e-33 145.6 118 64.4
QL05p074036 Quercus lobata HOM05D004992 ORTHO05D006004 3.2e-33 145.2 112 67.0
Ciclev10016836m.g Citrus clementina HOM05D004992 ORTHO05D006004 4.1e-33 144.8 119 67.2
MD10G1317900 Malus domestica HOM05D004992 ORTHO05D006004 9.2e-33 143.7 126 64.3
Duzib235G0746 Durio zibethinus HOM05D004992 ORTHO05D006004 4.6e-32 141.4 118 62.7
Sabra04G0010400 Salix brachista HOM05D003428 ORTHO05D004131 4.6e-32 141.4 118 61.0
Duzib192G0598 Durio zibethinus HOM05D004992 ORTHO05D006004 3.9e-31 138.3 118 62.7
CiPaw.10G069500 Carya illinoinensis HOM05D004992 ORTHO05D006004 5.1e-31 137.9 118 64.4
Manes.17G037200 Manihot esculenta HOM05D004992 ORTHO05D006004 6.6e-31 137.5 119 60.5
Phvul.006G151000 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 6.6e-31 137.5 114 58.8
VMungo0540G0931 Vigna mungo HOM05D004992 ORTHO05D006004 6.6e-31 137.5 114 60.5
Cpa.g.sc198.27 Carica papaya HOM05D004992 ORTHO05D006004 8.6e-31 137.1 118 59.3
Phvul.003G077200 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 7.3e-30 134.0 118 55.1
Lj4g0012462 Lotus japonicus HOM05D004992 ORTHO05D006004 9.6e-30 133.7 115 60.9
Potri.011G000400 Populus trichocarpa HOM05D004992 ORTHO05D006004 2.8e-29 132.1 118 57.6
Glyma.17G015100 Glycine max HOM05D004992 ORTHO05D006004 3.6e-29 131.7 118 55.1
TWI38G1979 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 3.6e-29 131.7 118 60.2
Dinv13873 Davidia involucrata HOM05D004992 ORTHO05D006004 4.7e-29 131.3 117 59.0
Thecc.06G217500 Theobroma cacao HOM05D004992 ORTHO05D006004 1.1e-28 130.2 115 58.3
Gohir.A06G147400 Gossypium hirsutum HOM05D004992 ORTHO05D006004 1.4e-28 129.8 118 57.6
Gohir.D06G153200 Gossypium hirsutum HOM05D004992 ORTHO05D006004 2.4e-28 129.0 118 56.8
Gorai.010G179200 Gossypium raimondii HOM05D004992 ORTHO05D006004 2.4e-28 129.0 118 56.8
CSS0017416 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 4.0e-28 128.3 122 54.9
COL.COLO4_31744 Corchorus olitorius HOM05D004992 ORTHO05D006004 5.2e-28 127.9 116 62.1
Lalb_Chr18g0056231 Lupinus albus HOM05D004992 ORTHO05D006004 8.9e-28 127.1 124 58.1
arahy.Tifrunner.gnm1.ann1.FJ4Y8F Arachis hypogaea HOM05D004992 ORTHO05D006004 1.2e-27 126.7 122 55.7
arahy.Tifrunner.gnm1.ann1.9Z1Z9Z Arachis hypogaea HOM05D004992 ORTHO05D006004 5.8e-27 124.4 122 54.1
Glyma.07G259100 Glycine max HOM05D004992 ORTHO05D006004 5.8e-27 124.4 118 51.7
Sed0007059 Sechium edule HOM05D004992 ORTHO05D006004 9.9e-27 123.6 119 54.6
Ca_00623_v3 Cicer arietinum L. HOM05D004992 ORTHO05D006004 1.3e-26 123.2 121 57.9
CANSAT56G2390 Cannabis sativa HOM05D004992 ORTHO05D006004 1.7e-26 122.9 126 59.5
TWI38G1613 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 2.2e-26 122.5 118 56.8
Glyma.13G206400 Glycine max HOM05D004992 ORTHO05D006004 3.8e-26 121.7 117 57.3
Manes.16G010000 Manihot esculenta HOM05D004992 ORTHO05D006004 3.8e-26 121.7 112 61.6
Medtr2g022820 Medicago truncatula HOM05D004992 ORTHO05D006004 6.4e-26 120.9 116 56.0
arahy.Tifrunner.gnm1.ann1.PC5S43 Arachis hypogaea HOM05D004992 ORTHO05D006004 5.4e-25 117.9 121 55.4
VMungo1215G1625 Vigna mungo HOM05D004992 ORTHO05D006004 2.1e-24 115.9 118 50.0
Sed0000784 Sechium edule HOM05D004992 ORTHO05D006004 2.7e-24 115.5 118 53.4
arahy.Tifrunner.gnm1.ann1.T879FL Arachis hypogaea HOM05D004992 ORTHO05D006004 1.3e-23 113.2 121 52.1
TAR624G0245 Trochodendron aralioides HOM05D004992 ORTHO05D006004 2.3e-23 112.5 110 60.9
ClCG01G022080 Citrullus lanatus HOM05D004992 ORTHO05D006004 3.9e-23 111.7 111 54.1
Nn1g07103 Nelumbo nucifera HOM05D004992 ORTHO05D006004 5.1e-23 111.3 112 58.0
MELO3C002469.2 Cucumis melo HOM05D004992 ORTHO05D006004 6.6e-23 110.9 118 47.5
arahy.Tifrunner.gnm1.ann1.Z4K8V6 Arachis hypogaea HOM05D004992 ORTHO05D006004 1.1e-22 110.2 121 51.2
MELO3C007381.2 Cucumis melo HOM05D004992 ORTHO05D006004 1.1e-22 110.2 109 55.0
ClCG03G004870 Citrullus lanatus HOM05D004992 ORTHO05D006004 1.5e-22 109.8 116 47.4
TPR.G7639 Trifolium pratense HOM05D004992 ORTHO05D006004 2.5e-22 109.0 116 51.7
Hma1.2p1_0091F.1_g046260 Hydrangea macrophylla HOM05D004992 ORTHO05D006004 5.6e-22 107.8 119 48.7
CsaV3_1G010900 Cucumis sativus L. HOM05D004992 ORTHO05D006004 2.8e-21 105.5 115 47.0
CSS0025190 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 1.8e-20 102.8 112 50.9
CSS0030561 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 1.8e-20 102.8 112 50.9
TPR.G37044 Trifolium pratense HOM05D004992 ORTHO05D006004 1.2e-19 100.1 110 52.7
Nitab4.5_0010096g0060 Nicotiana tabacum HOM05D004992 ORTHO05D006004 1.5e-19 99.8 111 51.4
Solyc02g080360.1 Solanum lycopersicum HOM05D004992 ORTHO05D006004 4.5e-19 98.2 111 43.2
PGR042G3122 Punica granatum HOM05D004992 ORTHO05D006004 7.6e-19 97.4 110 45.5
Sopen02g025060 Solanum pennellii HOM05D004992 ORTHO05D006004 7.6e-19 97.4 111 43.2
TPR.G37097 Trifolium pratense HOM05D004992 ORTHO05D006004 1.7e-18 96.3 110 51.8
PGSC0003DMG400016488 Solanum tuberosum HOM05D004992 ORTHO05D006004 8.4e-18 94.0 111 42.3
Manes.03G126800 Manihot esculenta HOM05D004992 ORTHO05D006004 3.2e-17 92.0 118 48.3
Eucgr.E04090 Eucalyptus grandis HOM05D004992 ORTHO05D006004 5.4e-17 91.3 118 44.9
Cc09_g01920 Coffea canephora HOM05D004992 ORTHO05D006004 7.1e-17 90.9 120 44.2
Duzib268G1102 Durio zibethinus HOM05D004992 ORTHO05D006004 7.1e-17 90.9 118 48.3
Medtr4g131880 Medicago truncatula HOM05D004992 ORTHO05D006004 7.1e-17 90.9 114 51.8
AT4G21780 Arabidopsis thaliana HOM05D004992 ORTHO05D006004 2.7e-16 89.0 115 47.0
Eucgr.F03448 Eucalyptus grandis HOM05D004992 ORTHO05D006004 2.7e-16 89.0 109 45.9
AL7G32150 Arabidopsis lyrata HOM05D004992 ORTHO05D006004 6.0e-16 87.8 115 47.0
Prupe.4G209300 Prunus persica HOM05D004992 ORTHO05D006004 1.3e-15 86.7 115 47.0
Thecc.07G043900 Theobroma cacao HOM05D004992 ORTHO05D006004 1.3e-15 86.7 118 47.5
Thhalv10027254m.g Eutrema salsugineum HOM05D004992 ORTHO05D006004 3.0e-15 85.5 121 44.6
Hma1.2p1_0813F.1_g222590 Hydrangea macrophylla HOM05D004992 ORTHO05D006004 3.0e-15 85.5 113 48.7
CsaV3_6G049140 Cucumis sativus L. HOM05D004992 ORTHO05D006004 1.1e-14 83.6 99 48.5
THA.LOC104806295 Tarenaya hassleriana HOM05D004992 ORTHO05D006004 1.1e-14 83.6 115 47.0
BraA01t01254Z Brassica rapa HOM05D004992 ORTHO05D006004 1.9e-14 82.8 124 43.5
Carub.0007s1962 Capsella rubella HOM05D004992 ORTHO05D006004 1.9e-14 82.8 117 45.3
Potri.001G421100 Populus trichocarpa HOM05D004992 ORTHO05D006004 1.9e-14 82.8 115 44.3
BcaNung02246 Brassica carinata HOM05D004992 ORTHO05D006004 2.5e-14 82.4 119 45.4
CARHR228520 Cardamine hirsuta HOM05D004992 ORTHO05D006004 2.5e-14 82.4 117 43.6
Ciclev10009906m.g Citrus clementina HOM05D004992 ORTHO05D006004 2.5e-14 82.4 117 47.0
Nitab4.5_0010096g0020 Nicotiana tabacum HOM05D000001 ORTHO05D009485 3.3e-14 82.0 115 46.1
Oeu051218.1 Olea europaea HOM05D004992 ORTHO05D006004 3.3e-14 82.0 121 42.1
Sed0025492 Sechium edule HOM05D004992 ORTHO05D006004 4.3e-14 81.6 118 40.7
Eucgr.D01305 Eucalyptus grandis HOM05D004992 ORTHO05D006004 5.6e-14 81.3 113 47.8
Eucgr.L03501 Eucalyptus grandis HOM05D004992 ORTHO05D006004 5.6e-14 81.3 113 47.8
Sc17g0007220 Simmondsia chinensis HOM05D004992 ORTHO05D006004 5.6e-14 81.3 132 37.9
Atru.chr10.2180 Acer truncatum HOM05D004992 ORTHO05D006004 1.3e-13 80.1 77 58.4
Peaxi162Scf00262g00051 Petunia axillaris HOM05D004992 ORTHO05D006004 1.6e-13 79.7 113 44.2
Gorai.002G086600 Gossypium raimondii HOM05D004992 ORTHO05D006004 2.8e-13 79.0 116 41.4
BcaC09g51203 Brassica carinata HOM05D004992 ORTHO05D006004 3.7e-13 78.6 125 42.4
C01p15800 Brassica napus HOM05D004992 ORTHO05D006004 3.7e-13 78.6 125 42.4
BolC1t01533H Brassica oleracea HOM05D004992 ORTHO05D006004 3.7e-13 78.6 125 42.4
Gohir.A01G077800 Gossypium hirsutum HOM05D004992 ORTHO05D006004 3.7e-13 78.6 116 41.4
A01p13110 Brassica napus HOM05D004992 ORTHO05D006004 4.8e-13 78.2 124 41.9
Lsat_1_v5_gn_7_17380 Lactuca sativa HOM05D004992 ORTHO05D006004 6.2e-13 77.8 125 42.4
TWI38G2258 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 8.1e-13 77.4 118 40.7
EL10Ac8g20021 Beta vulgaris HOM05D004992 ORTHO05D006004 1.1e-12 77.0 126 40.5
Potri.011G136500 Populus trichocarpa HOM05D004992 ORTHO05D006004 1.8e-12 76.3 112 43.8
arahy.Tifrunner.gnm1.ann1.R1VD00 Arachis hypogaea HOM05D004992 ORTHO05D006004 4.0e-12 75.1 115 40.9
Sp7g19950 Schrenkiella parvula HOM05D004992 ORTHO05D006004 9.0e-12 73.9 120 40.8
Ah.09g235060 Amaranthus hybridus HOM05D004992 ORTHO05D006004 1.2e-11 73.6 133 38.3
arahy.Tifrunner.gnm1.ann1.WBSQ2D Arachis hypogaea HOM05D004992 ORTHO05D006004 1.2e-11 73.6 115 40.0
Gohir.D05G366700 Gossypium hirsutum HOM05D004992 ORTHO05D006004 1.5e-11 73.2 118 40.7
Gorai.009G425100 Gossypium raimondii HOM05D004992 ORTHO05D006004 1.5e-11 73.2 118 40.7
Manes.15G073800 Manihot esculenta HOM05D004992 ORTHO05D006004 2.0e-11 72.8 122 38.5
SGA_v2.0_scaffold7G03870 Striga asiatica HOM05D004992 ORTHO05D006004 2.0e-11 72.8 109 39.4
MBI18_g24808_MAGBIO Magnolia biondii HOM05D004992 ORTHO05D006004 4.5e-11 71.6 111 42.3
Sc16g0006270 Simmondsia chinensis HOM05D004992 ORTHO05D006004 4.5e-11 71.6 111 37.8
Phvul.006G038900 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 5.8e-11 71.2 112 39.3
Phvul.008G265000 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 5.8e-11 71.2 118 36.4
Rhsim04G0000900 Rhododendron simsii HOM05D004992 ORTHO05D006004 7.6e-11 70.9 114 43.9
Rhsim04G0002000 Rhododendron simsii HOM05D004992 ORTHO05D006004 7.6e-11 70.9 114 43.9
Sed0003497 Sechium edule HOM05D004992 ORTHO05D006004 7.6e-11 70.9 115 40.9
PSO675G1893 Papaver somniferum HOM05D004992 ORTHO05D006004 9.9e-11 70.5 115 39.1
Gohir.A04G019200 Gossypium hirsutum HOM05D004992 ORTHO05D006004 1.3e-10 70.1 118 39.8
TPR.G29123 Trifolium pratense HOM05D004992 ORTHO05D006004 2.9e-10 68.9 111 39.6
Lsat_1_v5_gn_9_94121 Lactuca sativa HOM05D004992 ORTHO05D006004 3.8e-10 68.6 118 38.1
Lalb_Chr17g0348391 Lupinus albus HOM05D004992 ORTHO05D006004 3.8e-10 68.6 118 36.4
Migut.M01784 Erythranthe guttata HOM05D004992 ORTHO05D006004 1.1e-09 67.0 112 38.4
Sabra11G0122600 Salix brachista HOM05D004992 ORTHO05D006004 1.4e-09 66.6 110 40.9
Aa31LG6G3760 Aethionema arabicum HOM05D004992 ORTHO05D006004 2.4e-09 65.9 129 36.4
Glyma.18G101800 Glycine max HOM05D004992 ORTHO05D006004 3.2e-09 65.5 114 34.2
CANSAT21G1815 Cannabis sativa HOM05D004992 ORTHO05D006004 4.2e-09 65.1 115 38.3
Glyma.14G025500 Glycine max HOM05D004992 ORTHO05D006004 4.2e-09 65.1 113 35.4
Rhsim06G0215300 Rhododendron simsii HOM05D004992 ORTHO05D006004 4.2e-09 65.1 116 37.1
ATR0752G182 Amborella trichopoda HOM05D004992 ORTHO05D006004 9.3e-09 63.9 111 38.7
Phvul.008G265500 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 1.2e-08 63.5 118 35.6
GSVIVG01002002001 Vitis vinifera HOM05D004992 ORTHO05D006004 1.6e-08 63.2 118 36.4
Peaxi162Scf00203g00113 Petunia axillaris HOM05D004992 ORTHO05D006004 2.7e-08 62.4 103 38.8
DCAR_008138 Daucus carota HOM05D004992 ORTHO05D006004 4.6e-08 61.6 110 35.5
Glyma.02G289600 Glycine max HOM05D004992 ORTHO05D006004 6.0e-08 61.2 113 33.6
DCAR_022550 Daucus carota HOM05D004992 ORTHO05D006004 7.9e-08 60.8 119 35.3
Migut.M01366 Erythranthe guttata HOM05D004992 ORTHO05D006004 1.3e-07 60.1 109 39.4
PGSC0003DMG400014425 Solanum tuberosum HOM05D000017 ORTHO05D001349 1.8e-07 59.7 132 34.1
MSTRG.12965 Avicennia marina HOM05D004992 ORTHO05D006004 2.3e-07 59.3 92 40.2
unitig_62.g23278 Utricularia gibba HOM05D004992 ORTHO05D006004 3.9e-07 58.5 109 34.9
Oeu037355.1 Olea europaea HOM05D004992 ORTHO05D006004 5.1e-07 58.2 111 36.0
CiPaw.12G127900 Carya illinoinensis HOM05D004992 ORTHO05D006004 1.1e-06 57.0 95 43.2
Actinidia26927 Actinidia chinensis HOM05D004992 ORTHO05D006004 7.4e-06 54.3 76 47.4


User provided reference genes

Program Settings