Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G023000 Prunus persica HOM05D007895 ORTHO05D010017 0.0e+00 1317.4 633 100.0
MD10G1319500 Malus domestica HOM05D007895 ORTHO05D010017 0.0e+00 1224.2 633 90.8
MD05G1343800 Malus domestica HOM05D007895 ORTHO05D010017 0.0e+00 1221.8 633 90.5
RcHm_v2.0_Chr5g0003541 Rosa chinensis HOM05D007895 ORTHO05D010017 0.0e+00 1174.5 636 87.9
FvH4_3g02321 Fragaria vesca HOM05D007895 ORTHO05D010017 0.0e+00 1166.4 636 86.6
Thecc.06G218400 Theobroma cacao HOM05D007895 ORTHO05D010017 0.0e+00 1135.2 633 83.7
Potri.011G001800 Populus trichocarpa HOM05D007895 ORTHO05D010017 0.0e+00 1134.8 633 83.6
Cfa000239 Carpinus fangiana HOM05D007895 ORTHO05D010017 0.0e+00 1134.0 633 84.2
Duzib235G1140 Durio zibethinus HOM05D007895 ORTHO05D010017 0.0e+00 1132.9 633 84.0
QL05p073549 Quercus lobata HOM05D007895 ORTHO05D010017 0.0e+00 1126.7 632 82.9
QL05p073789 Quercus lobata HOM05D007895 ORTHO05D010017 0.0e+00 1126.7 632 82.9
TAR627G0668 Trochodendron aralioides HOM05D007895 ORTHO05D010017 0.0e+00 1120.9 633 82.3
Gohir.D05G172500 Gossypium hirsutum HOM05D007895 ORTHO05D010017 0.0e+00 1116.7 633 82.8
Gorai.009G177700 Gossypium raimondii HOM05D007895 ORTHO05D010017 0.0e+00 1115.1 633 82.8
Gohir.A05G169300 Gossypium hirsutum HOM05D007895 ORTHO05D010017 0.0e+00 1113.6 633 82.6
Sabra11G0000700 Salix brachista HOM05D007895 ORTHO05D010017 0.0e+00 1107.8 633 82.1
Manes.17G037900 Manihot esculenta HOM05D007895 ORTHO05D010017 0.0e+00 1097.8 633 81.0
Dinv13880 Davidia involucrata HOM05D007895 ORTHO05D010017 0.0e+00 1089.7 609 83.6
TWI63G1238 Tripterygium wilfordii HOM05D007895 ORTHO05D010017 0.0e+00 1080.5 633 79.5
Glyma.15G106800 Glycine max HOM05D007895 ORTHO05D010017 0.0e+00 1079.3 635 80.6
Glyma.13G205700 Glycine max HOM05D007895 ORTHO05D010017 0.0e+00 1077.8 635 80.5
Hma1.2p1_0057F.1_g031900 Hydrangea macrophylla HOM05D007895 ORTHO05D010017 2.2e-311 1071.6 635 77.8
VMungo0540G0331 Vigna mungo HOM05D007895 ORTHO05D010017 1.5e-310 1068.9 635 80.2
Phvul.006G150500 Phaseolus vulgaris HOM05D007895 ORTHO05D010017 2.1e-309 1065.1 635 80.0
Medtr2g022910 Medicago truncatula HOM05D007895 ORTHO05D010017 1.9e-305 1052.0 635 77.8
COL.COLO4_31754 Corchorus olitorius HOM05D007895 ORTHO05D010017 9.2e-305 1049.7 591 82.7
TPR.G7647 Trifolium pratense HOM05D007895 ORTHO05D010017 9.2e-305 1049.7 635 78.0
PGR004G2409 Punica granatum HOM05D007895 ORTHO05D010017 2.7e-304 1048.1 634 77.3
EL10Ac8g20029 Beta vulgaris HOM05D007895 ORTHO05D010017 4.6e-304 1047.3 633 76.3
Lalb_Chr18g0056281 Lupinus albus HOM05D007895 ORTHO05D010017 1.8e-300 1035.4 635 78.1
Ciclev10017921m.g Citrus clementina HOM05D007895 ORTHO05D010017 4.0e-300 1034.2 633 76.6
Psat1g181720 Pisum sativum HOM05D007895 ORTHO05D010017 2.2e-298 1028.5 636 75.8
CSS0036667 Camellia sinensis var. sinensis HOM05D007895 ORTHO05D010017 1.1e-297 1026.2 633 76.5
Oeu033195.1 Olea europaea HOM05D007895 ORTHO05D010017 1.2e-296 1022.7 641 74.4
Rhsim13G0155200 Rhododendron simsii HOM05D007895 ORTHO05D010017 1.6e-296 1022.3 634 74.8
Nitab4.5_0007482g0010 Nicotiana tabacum HOM05D007895 ORTHO05D010017 1.3e-293 1012.7 633 72.7
Nitab4.5_0003254g0060 Nicotiana tabacum HOM05D007895 ORTHO05D010017 4.8e-293 1010.7 633 72.8
CAN.G569.16 Capsicum annuum HOM05D007895 ORTHO05D010017 7.1e-289 996.9 633 72.7
Lj6g0014344 Lotus japonicus HOM05D007895 ORTHO05D010017 1.5e-286 989.2 605 77.9
Ah.09g235010 Amaranthus hybridus HOM05D007895 ORTHO05D010017 1.5e-278 962.6 622 71.4
MBI18_g12452_MAGBIO Magnolia biondii HOM05D007895 ORTHO05D010017 4.8e-277 957.6 636 72.0
Cc09_g01830 Coffea canephora HOM05D007895 ORTHO05D010017 6.9e-276 953.7 633 71.1
DCAR_004211 Daucus carota HOM05D007895 ORTHO05D010017 3.2e-273 944.9 634 68.6
ATR0752G052 Amborella trichopoda HOM05D007895 ORTHO05D010017 3.2e-249 865.1 644 64.1
THA.LOC104806298 Tarenaya hassleriana HOM05D007895 ORTHO05D010017 9.7e-246 853.6 638 65.0
Lsat_1_v5_gn_7_17681 Lactuca sativa HOM05D007895 ORTHO05D010017 5.3e-244 847.8 638 62.9
CDE02G0632 Ceratophyllum demersum HOM05D007895 ORTHO05D010017 1.1e-241 840.1 633 63.0
BraA01t01263Z Brassica rapa HOM05D007895 ORTHO05D010017 1.2e-235 820.1 638 61.6
Aqoxy1G03251 Aquilegia oxysepala HOM05D007895 ORTHO05D010017 7.7e-235 817.4 534 73.6
BolC1t01543H Brassica oleracea HOM05D007895 ORTHO05D010017 1.9e-233 812.8 638 60.8
BcaNung02255 Brassica carinata HOM05D007895 ORTHO05D010017 1.2e-232 810.1 638 60.7
BcaC09g51191 Brassica carinata HOM05D007895 ORTHO05D010017 3.6e-232 808.5 635 60.5
C01p15890 Brassica napus HOM05D007895 ORTHO05D010017 3.6e-232 808.5 635 60.5
Carub.0007s1948 Capsella rubella HOM05D007895 ORTHO05D010017 5.0e-226 788.1 639 59.3
CDE05G3159 Ceratophyllum demersum HOM05D007895 ORTHO05D010017 5.0e-226 788.1 543 67.4
Sp7g20040 Schrenkiella parvula HOM05D007895 ORTHO05D010017 2.0e-219 766.1 639 58.4
A01p13190 Brassica napus HOM05D007895 ORTHO05D010017 5.9e-219 764.6 638 58.0
Mapoly0063s0045 Marchantia polymorpha HOM05D007895 ORTHO05D010017 2.1e-184 649.8 640 51.2
GSVIVG01002953001 Vitis vinifera HOM05D007895 ORTHO05D010017 2.7e-179 632.9 382 79.1
AagrBONN_evm.TU.Sc2ySwM_117.3222 Anthoceros agrestis HOM05D007895 ORTHO05D010017 7.8e-179 631.3 638 49.1
SMO351G0184 Selaginella moellendorffii HOM05D007895 ORTHO05D010017 3.6e-176 622.5 643 49.0
CiPaw.09G090200 Carya illinoinensis HOM05D007895 ORTHO05D010017 1.1e-145 521.2 303 80.2
Mapoly0021s0002 Marchantia polymorpha HOM05D007895 ORTHO05D010017 1.5e-129 467.6 741 37.2
CANSAT56G1122 Cannabis sativa HOM05D007895 ORTHO05D010017 3.6e-123 446.4 275 78.9
MSTRG.7225 Avicennia marina HOM05D007895 ORTHO05D010017 1.2e-115 421.4 271 73.8
Cpa.g.sc189.18 Carica papaya HOM05D007895 ORTHO05D010017 1.0e-114 418.3 244 81.1
Lalb_Chr15g0087521 Lupinus albus HOM05D007895 ORTHO05D010017 4.7e-107 392.9 224 82.1
Cc00_g03030 Coffea canephora HOM05D007895 ORTHO05D010017 1.4e-106 391.3 247 71.7
Lalb_Chr15g0087511 Lupinus albus HOM05D007895 ORTHO05D010017 2.6e-105 387.1 241 74.3
AUR62021973 Chenopodium quinoa HOM05D007895 ORTHO05D010017 1.3e-104 384.8 272 65.4
AUR62012684 Chenopodium quinoa HOM05D007895 ORTHO05D010017 8.3e-104 382.1 272 64.7
Thhalv10026963m.g Eutrema salsugineum HOM05D007895 ORTHO05D010017 1.1e-100 371.7 256 68.0
CARHR228650 Cardamine hirsuta HOM05D007895 ORTHO05D010017 1.9e-100 370.9 256 68.8
AT4G21890 Arabidopsis thaliana HOM05D007895 ORTHO05D010017 2.8e-99 367.1 252 68.3
Sc05g0009090 Simmondsia chinensis HOM05D007895 ORTHO05D010017 2.6e-97 360.5 252 67.9
Aa31LG6G3880 Aethionema arabicum HOM05D007895 ORTHO05D010017 1.8e-90 337.8 255 63.1
Duzib160G0114 Durio zibethinus HOM05D007895 ORTHO05D010017 4.1e-71 273.5 257 56.8
SalBow8G0130 Salvia bowleyana HOM05D007895 ORTHO05D010017 1.6e-54 218.4 170 61.8
Lalb_Chr15g0087501 Lupinus albus HOM05D007895 ORTHO05D010017 5.6e-52 209.9 130 77.7
Rhsim13G0155300 Rhododendron simsii HOM05D007895 ORTHO05D013379 2.1e-43 181.4 191 52.9
CANSAT01G0136 Cannabis sativa HOM05D001404 ORTHO05D009009 3.0e-37 161.0 368 32.9
Eucgr.B02570 Eucalyptus grandis HOM05D001404 ORTHO05D009009 2.5e-36 157.9 385 32.2
Ca_24163_v3 Cicer arietinum L. HOM05D001404 ORTHO05D002309 3.3e-36 157.5 369 32.0
arahy.Tifrunner.gnm1.ann1.2TJ8DU Arachis hypogaea HOM05D001404 ORTHO05D009009 7.4e-36 156.4 387 31.0
PGR119G0405 Punica granatum HOM05D001404 ORTHO05D009009 1.3e-35 155.6 374 32.4
SMO091G0008 Selaginella moellendorffii HOM05D001404 ORTHO05D009009 1.3e-35 155.6 359 29.2
BraA07t31231Z Brassica rapa HOM05D001404 ORTHO05D009009 2.8e-35 154.5 386 30.1
A07p36630 Brassica napus HOM05D001404 ORTHO05D009009 3.7e-35 154.1 386 30.1
Peaxi162Scf00828g00020 Petunia axillaris HOM05D001404 ORTHO05D009009 1.1e-34 152.5 385 31.2
Potri.010G037600 Populus trichocarpa HOM05D001404 ORTHO05D009009 1.1e-34 152.5 388 31.4
Os07g0481000 Oryza sativa ssp. japonica HOM05D001404 ORTHO05D009009 1.4e-34 152.1 373 31.9
THA.LOC104822951 Tarenaya hassleriana HOM05D001404 ORTHO05D009009 1.4e-34 152.1 374 31.8
Ciclev10031837m.g Citrus clementina HOM05D001404 ORTHO05D009009 3.1e-34 151.0 373 31.4
FAN12G1952 Fragaria x ananassa HOM05D001404 ORTHO05D009009 4.1e-34 150.6 377 29.7
CARHR063240 Cardamine hirsuta HOM05D001404 ORTHO05D002309 9.0e-34 149.4 383 28.5
HanXRQChr17g0570291 Helianthus annuus HOM05D001404 ORTHO05D009009 9.0e-34 149.4 392 31.4
Medtr5g036470 Medicago truncatula HOM05D001404 ORTHO05D009009 9.0e-34 149.4 390 30.8
CiPaw.05G145400 Carya illinoinensis HOM05D001404 ORTHO05D009009 1.2e-33 149.1 370 30.8
Hund25295 Selenicereus undatus HOM05D001404 ORTHO05D009009 1.2e-33 149.1 364 31.3
Thecc.02G239700 Theobroma cacao HOM05D001404 ORTHO05D009009 1.2e-33 149.1 374 31.6
FvH4_4g35220 Fragaria vesca HOM05D001404 ORTHO05D009009 1.5e-33 148.7 383 29.5
RcHm_v2.0_Chr4g0444821 Rosa chinensis HOM05D001404 ORTHO05D009009 1.5e-33 148.7 375 30.4
Lj2g0007192 Lotus japonicus HOM05D001404 ORTHO05D009009 2.6e-33 147.9 396 30.1
CSS0043132 Camellia sinensis var. sinensis HOM05D001404 ORTHO05D002309 4.5e-33 147.1 381 31.0
Mapoly0056s0134 Marchantia polymorpha HOM05D001404 ORTHO05D009009 4.5e-33 147.1 380 32.6
MD16G1084700 Malus domestica HOM05D001404 ORTHO05D009009 7.6e-33 146.4 379 30.3
VMungo1215G3058 Vigna mungo HOM05D001404 ORTHO05D009009 7.6e-33 146.4 390 31.8
Glyma.01G037400 Glycine max HOM05D001404 ORTHO05D009009 1.0e-32 146.0 396 30.1
Lalb_Chr05g0217271 Lupinus albus HOM05D001404 ORTHO05D009009 1.0e-32 146.0 398 29.4
QL03p067270 Quercus lobata HOM05D001404 ORTHO05D009009 1.0e-32 146.0 371 30.7
Oeu028546.1 Olea europaea HOM05D001404 ORTHO05D009009 2.9e-32 144.4 377 32.4
FAN07G0845 Fragaria x ananassa HOM05D001404 ORTHO05D009009 3.8e-32 144.1 379 30.1
Duzib268G0371 Durio zibethinus HOM05D001404 ORTHO05D009009 6.5e-32 143.3 373 31.6
Sp5g25260 Schrenkiella parvula HOM05D001404 ORTHO05D009009 8.5e-32 142.9 384 28.6
C06p44030 Brassica napus HOM05D001404 ORTHO05D009009 1.4e-31 142.1 379 29.3
BolC6t39476H Brassica oleracea HOM05D001404 ORTHO05D009009 1.4e-31 142.1 379 29.3
Thhalv10018717m.g Eutrema salsugineum HOM05D001404 ORTHO05D009009 1.4e-31 142.1 381 28.6
Aa31LG4G10750 Aethionema arabicum HOM05D001404 ORTHO05D009009 2.5e-31 141.4 383 28.2
Psat2g112600 Pisum sativum HOM05D001404 ORTHO05D009009 2.5e-31 141.4 394 29.7
Actinidia08188 Actinidia chinensis HOM05D001404 ORTHO05D009009 3.2e-31 141.0 383 29.8
AL2G29430 Arabidopsis lyrata HOM05D001404 ORTHO05D009009 4.2e-31 140.6 378 28.3
Carub.0002s1684 Capsella rubella HOM05D001404 ORTHO05D009009 7.2e-31 139.8 372 27.4
Gorai.005G187100 Gossypium raimondii HOM05D001404 ORTHO05D009009 9.3e-31 139.4 373 30.8
SalBow2G3257 Salvia bowleyana HOM05D001404 ORTHO05D009009 9.3e-31 139.4 365 33.2
AT1G70150 Arabidopsis thaliana HOM05D001404 ORTHO05D009009 1.2e-30 139.0 380 28.2
CDE10G0936 Ceratophyllum demersum HOM05D001404 ORTHO05D009009 1.2e-30 139.0 371 30.7
Sc14g0008480 Simmondsia chinensis HOM05D001355 ORTHO05D003368 1.2e-30 139.0 372 30.1
AagrBONN_evm.TU.Sc2ySwM_368.625 Anthoceros agrestis HOM05D001404 ORTHO05D009009 1.6e-30 138.7 395 29.9
Cc11_g14260 Coffea canephora HOM05D001404 ORTHO05D009009 1.6e-30 138.7 379 30.6
Lsat_1_v5_gn_4_6141 Lactuca sativa HOM05D001404 ORTHO05D009009 1.6e-30 138.7 390 29.7
Migut.L01385 Erythranthe guttata HOM05D001404 ORTHO05D009009 2.7e-30 137.9 367 30.8
TAR374G0908 Trochodendron aralioides HOM05D001404 ORTHO05D009009 2.7e-30 137.9 390 29.2
HPP92_001781 Vanilla planifolia HOM05D007895 ORTHO05D010017 2.7e-30 137.9 129 58.1
SalBow2G3155 Salvia bowleyana HOM05D001404 ORTHO05D009009 3.6e-30 137.5 377 32.6
Sed0021588 Sechium edule HOM05D001404 ORTHO05D009009 3.6e-30 137.5 406 28.8
MSTRG.7858 Avicennia marina HOM05D001404 ORTHO05D009009 1.0e-29 136.0 391 30.2
Pp3c9_21180 Physcomitrium patens HOM05D001404 ORTHO05D009009 1.0e-29 136.0 378 28.6
GSVIVG01020147001 Vitis vinifera HOM05D001404 ORTHO05D009009 1.0e-29 136.0 379 29.3
Prupe.1G261400 Prunus persica HOM05D001404 ORTHO05D009009 1.3e-29 135.6 372 29.3
PGSC0003DMG401022613 Solanum tuberosum HOM05D001404 ORTHO05D009009 1.3e-29 135.6 372 29.6
Sopen05g002340 Solanum pennellii HOM05D001404 ORTHO05D009009 1.8e-29 135.2 372 29.0
FAN22G1682 Fragaria x ananassa HOM05D001404 ORTHO05D009009 2.3e-29 134.8 379 29.3
Manes.01G195300 Manihot esculenta HOM05D001404 ORTHO05D009009 5.1e-29 133.7 377 30.0
CAN.G159.8 Capsicum annuum HOM05D001404 ORTHO05D009009 8.7e-29 132.9 383 29.0
Solyc05g006410.3 Solanum lycopersicum HOM05D001404 ORTHO05D009009 8.7e-29 132.9 373 29.8
EL10Ac6g13111 Beta vulgaris HOM05D001404 ORTHO05D009009 1.1e-28 132.5 375 30.4
BcaC08g46464 Brassica carinata HOM05D001404 ORTHO05D009009 1.1e-28 132.5 379 28.5
Gohir.A03G143500 Gossypium hirsutum HOM05D001404 ORTHO05D009009 1.1e-28 132.5 373 29.5
ClCG05G024960 Citrullus lanatus HOM05D001404 ORTHO05D009009 1.5e-28 132.1 361 31.0
TWI36G0457 Tripterygium wilfordii HOM05D001404 ORTHO05D009009 1.5e-28 132.1 398 28.9
vmacro01204 Vaccinium macrocarpon HOM05D001404 ORTHO05D009009 1.9e-28 131.7 401 29.7
SHI05275 Sapria himalayana HOM05D001404 ORTHO05D009009 4.3e-28 130.6 379 29.0
SMO238G0008 Selaginella moellendorffii HOM05D001404 ORTHO05D009009 1.3e-27 129.0 346 26.9
COL.COLO4_36283 Corchorus olitorius HOM05D001404 ORTHO05D002309 2.8e-27 127.9 355 31.5
SGA_v2.0_scaffold8G04270 Striga asiatica HOM05D001404 ORTHO05D009009 4.8e-27 127.1 389 28.8
Cpa.g.sc1960.1 Carica papaya HOM05D001404 ORTHO05D009009 1.4e-26 125.6 330 29.7
Gohir.D02G166800 Gossypium hirsutum HOM05D001404 ORTHO05D009009 3.1e-26 124.4 314 30.3
Aqoxy3G00874 Aquilegia oxysepala HOM05D001404 ORTHO05D009009 9.1e-26 122.9 386 28.0
CAN.G328.16 Capsicum annuum HOM05D007895 ORTHO05D010017 9.1e-26 122.9 154 43.5
Nitab4.5_0003602g0020 Nicotiana tabacum HOM05D001404 ORTHO05D009009 1.2e-25 122.5 416 27.4
HPP92_002468 Vanilla planifolia HOM05D001404 ORTHO05D009009 1.2e-25 122.5 304 31.9
Zm00001eb321400 Zea mays HOM05D001404 ORTHO05D009009 1.2e-25 122.5 350 30.3
ECA234G1431 Erigeron canadensis HOM05D001404 ORTHO05D002309 1.5e-25 122.1 400 28.5
Nitab4.5_0002312g0090 Nicotiana tabacum HOM05D001404 ORTHO05D009009 2.0e-25 121.7 318 29.6
FAN17G2278 Fragaria x ananassa HOM05D001404 ORTHO05D009009 5.9e-25 120.2 240 32.5
Haze_12124 Corylus avellana HOM05D001404 ORTHO05D002309 1.0e-24 119.4 311 30.9
arahy.Tifrunner.gnm1.ann1.VUK41S Arachis hypogaea HOM05D001404 ORTHO05D009009 1.1e-23 115.9 249 31.3
Nn4g22934 Nelumbo nucifera HOM05D001404 ORTHO05D009009 2.5e-23 114.8 349 28.7
PSO161G0115 Papaver somniferum HOM05D001404 ORTHO05D009009 3.2e-23 114.4 380 28.7
TPR.G17319 Trifolium pratense HOM05D001404 ORTHO05D009009 3.2e-23 114.4 333 28.2
CBR_g72156 Chara braunii HOM05D001404 ORTHO05D009009 2.3e-21 108.2 293 27.6
Sabra10G0028400 Salix brachista HOM05D001404 ORTHO05D009009 5.1e-21 107.1 318 28.6
Lj6A799T78 Lonicera japonica HOM05D001404 ORTHO05D009009 1.1e-20 105.9 384 27.9
CsaV3_5G031930 Cucumis sativus L. HOM05D001404 ORTHO05D009009 8.2e-19 99.8 307 29.0
Rhsim12G0051800 Rhododendron simsii HOM05D001404 ORTHO05D009009 5.3e-18 97.1 231 32.0
Glyma.02G027500 Glycine max HOM05D001404 ORTHO05D009009 9.1e-18 96.3 254 28.7
Phvul.002G076800 Phaseolus vulgaris HOM05D001404 ORTHO05D009009 1.5e-17 95.5 227 32.6
unitig_749.g13260 Utricularia gibba HOM05D001404 ORTHO05D009009 6.5e-16 90.1 370 26.5
AUR62026309 Chenopodium quinoa HOM05D001404 ORTHO05D009009 7.2e-15 86.7 241 30.3
Dinv24916 Davidia involucrata HOM05D001404 ORTHO05D009009 3.6e-14 84.3 226 31.4
AagrBONN_evm.TU.Sc2ySwM_117.3431 Anthoceros agrestis HOM05D001404 ORTHO05D009009 5.2e-13 80.5 159 34.0
MCO10G058 Micromonas commoda HOM05D001404 ORTHO05D009009 2.6e-12 78.2 429 24.5
ATR0712G045 Amborella trichopoda HOM05D001404 ORTHO05D009009 5.3e-10 70.5 216 25.0
Atru.chr11.1937 Acer truncatum HOM05D001404 ORTHO05D002309 1.6e-09 68.9 96 40.6
SalBow2G0480 Salvia bowleyana HOM05D001404 ORTHO05D009009 5.9e-09 67.0 301 24.9


User provided reference genes

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