Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G022700 Prunus persica HOM05D004301 ORTHO05D005124 1.1e-66 256.5 138 100.0
Ciclev10017125m.g Citrus clementina HOM05D004301 ORTHO05D005124 3.6e-60 235.0 138 89.9
Cpa.g.sc198.42 Carica papaya HOM05D004301 ORTHO05D005124 4.7e-60 234.6 138 89.9
Duzib235G0809 Durio zibethinus HOM05D004301 ORTHO05D005124 1.4e-59 233.0 138 89.1
Dinv18010 Davidia involucrata HOM05D004301 ORTHO05D005124 3.0e-59 231.9 138 89.9
Gohir.D06G153800 Gossypium hirsutum HOM05D004301 ORTHO05D005124 6.7e-59 230.7 138 88.4
Gorai.010G179800 Gossypium raimondii HOM05D004301 ORTHO05D005124 6.7e-59 230.7 138 88.4
Gohir.A06G147900 Gossypium hirsutum HOM05D004301 ORTHO05D005124 8.8e-59 230.3 138 87.7
RcHm_v2.0_Chr5g0030661 Rosa chinensis HOM05D004301 ORTHO05D005124 8.8e-59 230.3 138 89.1
CSS0003131 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 2.0e-58 229.2 138 88.4
CSS0040354 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 5.7e-58 227.6 138 87.7
Lj1A1229G41 Lonicera japonica HOM05D004301 ORTHO05D005124 5.7e-58 227.6 140 87.1
Atru.chr10.2203 Acer truncatum HOM05D004301 ORTHO05D005124 9.7e-58 226.9 140 87.9
CSS0019231 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 1.3e-57 226.5 138 87.7
Thecc.06G088100 Theobroma cacao HOM05D004301 ORTHO05D005124 1.7e-57 226.1 138 86.2
vmacro03693 Vaccinium macrocarpon HOM05D004301 ORTHO05D005124 1.7e-57 226.1 139 88.5
Manes.03G210700 Manihot esculenta HOM05D004301 ORTHO05D005124 2.8e-57 225.3 138 89.1
COL.COLO4_28865 Corchorus olitorius HOM05D004301 ORTHO05D005124 4.8e-57 224.6 138 85.5
Nitab4.5_0007007g0030 Nicotiana tabacum HOM05D004301 ORTHO05D005124 6.3e-57 224.2 139 87.1
Nitab4.5_0007482g0040 Nicotiana tabacum HOM05D004301 ORTHO05D005124 6.3e-57 224.2 139 87.1
FAN16G3380 Fragaria x ananassa HOM05D004301 ORTHO05D005124 8.2e-57 223.8 138 85.5
RcHm_v2.0_Chr5g0030681 Rosa chinensis HOM05D004301 ORTHO05D005124 8.2e-57 223.8 138 87.0
Rhsim13G0155100 Rhododendron simsii HOM05D004301 ORTHO05D005124 1.1e-56 223.4 139 87.8
PGSC0003DMG400016459 Solanum tuberosum HOM05D004301 ORTHO05D005124 1.4e-56 223.0 139 86.3
Rhsim08G0082200 Rhododendron simsii HOM05D004301 ORTHO05D005124 3.1e-56 221.9 139 87.8
SalBow8G0640 Salvia bowleyana HOM05D004301 ORTHO05D005124 4.1e-56 221.5 139 84.9
Sopen02g025120 Solanum pennellii HOM05D004301 ORTHO05D005124 4.1e-56 221.5 139 85.6
TAR626G0955 Trochodendron aralioides HOM05D004301 ORTHO05D005124 7.0e-56 220.7 138 84.8
Hund21400 Selenicereus undatus HOM05D004301 ORTHO05D005124 9.1e-56 220.3 139 84.9
Cc00_g00410 Coffea canephora HOM05D004301 ORTHO05D005124 1.2e-55 219.9 141 85.8
FvH4_3g18180 Fragaria vesca HOM05D004301 ORTHO05D005124 1.2e-55 219.9 138 84.8
Haze_06785 Corylus avellana HOM05D004301 ORTHO05D005124 1.5e-55 219.5 139 86.3
Peaxi162Scf00595g00039 Petunia axillaris HOM05D004301 ORTHO05D005124 1.5e-55 219.5 140 85.0
Cfa000237 Carpinus fangiana HOM05D004301 ORTHO05D005124 2.0e-55 219.2 139 86.3
Solyc02g080430.3 Solanum lycopersicum HOM05D004301 ORTHO05D005124 2.0e-55 219.2 139 84.9
Lj2g0004276 Lotus japonicus HOM05D004301 ORTHO05D005124 3.5e-55 218.4 137 83.2
Lj5g0024394 Lotus japonicus HOM05D004301 ORTHO05D005124 3.5e-55 218.4 137 83.2
TAR629G3276 Trochodendron aralioides HOM05D004301 ORTHO05D005124 4.5e-55 218.0 138 83.3
CAN.G1175.8 Capsicum annuum HOM05D004301 ORTHO05D005124 7.7e-55 217.2 139 84.2
Cc03_g13960 Coffea canephora HOM05D004301 ORTHO05D005124 7.7e-55 217.2 141 84.4
FAN25G1723 Fragaria x ananassa HOM05D004301 ORTHO05D005124 7.7e-55 217.2 138 83.3
PGR004G0513 Punica granatum HOM05D004301 ORTHO05D005124 7.7e-55 217.2 142 83.8
Sc05g0009100 Simmondsia chinensis HOM05D004301 ORTHO05D005124 7.7e-55 217.2 140 83.6
CiPaw.09G090400 Carya illinoinensis HOM05D004301 ORTHO05D005124 1.0e-54 216.9 141 83.7
Manes.09G000400 Manihot esculenta HOM05D004301 ORTHO05D005124 1.3e-54 216.5 138 85.5
Migut.M01306 Erythranthe guttata HOM05D004301 ORTHO05D005124 1.7e-54 216.1 140 82.1
TWI63G1781 Tripterygium wilfordii HOM05D004301 ORTHO05D005124 1.7e-54 216.1 139 84.9
MSTRG.7223 Avicennia marina HOM05D004301 ORTHO05D005124 2.9e-54 215.3 140 83.6
Phvul.007G037700 Phaseolus vulgaris HOM05D004301 ORTHO05D005124 3.8e-54 214.9 137 81.8
Potri.004G017100 Populus trichocarpa HOM05D004301 ORTHO05D005124 6.5e-54 214.2 138 84.1
arahy.Tifrunner.gnm1.ann1.0XE69C Arachis hypogaea HOM05D004301 ORTHO05D005124 1.5e-53 213.0 138 79.7
arahy.Tifrunner.gnm1.ann1.210EWG Arachis hypogaea HOM05D004301 ORTHO05D005124 1.9e-53 212.6 138 79.7
CsaV3_4G017560 Cucumis sativus L. HOM05D004301 ORTHO05D005124 1.9e-53 212.6 139 83.5
MELO3C014729.2 Cucumis melo HOM05D004301 ORTHO05D005124 2.5e-53 212.2 139 82.7
QL05p073536 Quercus lobata HOM05D004301 ORTHO05D005124 2.5e-53 212.2 143 82.5
ATR0752G175 Amborella trichopoda HOM05D004301 ORTHO05D005124 3.2e-53 211.8 138 80.4
THA.LOC104806300 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 3.2e-53 211.8 140 82.1
Oeu033197.1 Olea europaea HOM05D004301 ORTHO05D005124 4.2e-53 211.5 140 82.1
Sabra04G0009400 Salix brachista HOM05D004301 ORTHO05D005124 4.2e-53 211.5 138 82.6
arahy.Tifrunner.gnm1.ann1.6J361A Arachis hypogaea HOM05D004301 ORTHO05D005124 5.5e-53 211.1 138 79.0
Psat3g175280 Pisum sativum HOM05D004301 ORTHO05D005124 5.5e-53 211.1 138 81.2
QL05p073775 Quercus lobata HOM05D004301 ORTHO05D005124 5.5e-53 211.1 143 81.8
Ca_26119_v3 Cicer arietinum L. HOM05D004301 ORTHO05D005124 7.2e-53 210.7 137 80.3
TPR.G23756 Trifolium pratense HOM05D004301 ORTHO05D005124 9.4e-53 210.3 137 80.3
Glyma.10G264300 Glycine max HOM05D004301 ORTHO05D005124 2.1e-52 209.1 137 80.3
SGA_v2.0_scaffold4G01921 Striga asiatica HOM05D004301 ORTHO05D005124 2.1e-52 209.1 143 77.6
HPP92_021475 Vanilla planifolia HOM05D004301 ORTHO05D005124 4.7e-52 208.0 138 81.2
Medtr7g037020 Medicago truncatula HOM05D004301 ORTHO05D005124 6.1e-52 207.6 137 79.6
CANSAT56G0804 Cannabis sativa HOM05D004301 ORTHO05D005124 8.0e-52 207.2 141 79.4
Carub.0006s3270 Capsella rubella HOM05D004301 ORTHO05D005124 1.0e-51 206.8 140 79.3
Lalb_Chr17g0338691 Lupinus albus HOM05D004301 ORTHO05D005124 1.0e-51 206.8 138 78.3
CARHR252750 Cardamine hirsuta HOM05D004301 ORTHO05D005124 1.4e-51 206.5 141 78.7
AT4G04780 Arabidopsis thaliana HOM05D004301 ORTHO05D005124 5.2e-51 204.5 140 79.3
CDE05G1190 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 5.2e-51 204.5 138 79.7
PSO339G4464 Papaver somniferum HOM05D004301 ORTHO05D005124 5.2e-51 204.5 139 80.6
PSO384G5030 Papaver somniferum HOM05D004301 ORTHO05D005124 5.2e-51 204.5 139 80.6
Sp6g04160 Schrenkiella parvula HOM05D004301 ORTHO05D005124 5.2e-51 204.5 140 77.9
AL6G48270 Arabidopsis lyrata HOM05D004301 ORTHO05D005124 6.7e-51 204.1 140 78.6
THA.LOC104813057 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 6.7e-51 204.1 140 77.9
ECA248G0561 Erigeron canadensis HOM05D004301 ORTHO05D005124 8.8e-51 203.8 147 75.5
Lsat_1_v5_gn_1_128621 Lactuca sativa HOM05D004301 ORTHO05D005124 1.5e-50 203.0 164 70.7
Aqoxy3G02575 Aquilegia oxysepala HOM05D004301 ORTHO05D005124 1.3e-49 199.9 148 76.4
MBI16_g31789_MAGBIO Magnolia biondii HOM05D004301 ORTHO05D005124 2.2e-49 199.1 152 73.7
CDE04G1315 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 2.8e-49 198.7 138 76.8
Oeu037360.1 Olea europaea HOM05D004301 ORTHO05D005124 6.3e-49 197.6 141 75.9
FAN12G2174 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.4e-48 196.4 144 75.0
MD10G1319700 Malus domestica HOM05D004301 ORTHO05D005124 1.4e-48 196.4 138 77.5
DCAR_008141 Daucus carota HOM05D004301 ORTHO05D005124 3.1e-48 195.3 140 77.1
HanXRQChr10g0285201 Helianthus annuus HOM05D004301 ORTHO05D005124 3.1e-48 195.3 160 68.1
VMungo0720G3170 Vigna mungo HOM05D004301 ORTHO05D005124 4.1e-48 194.9 172 64.0
FAN07G2330 Fragaria x ananassa HOM05D004301 ORTHO05D005124 7.0e-48 194.1 144 73.6
Cc00_g35050 Coffea canephora HOM05D004301 ORTHO05D005124 9.1e-48 193.7 141 78.0
A09p26100 Brassica napus HOM05D004301 ORTHO05D005124 1.6e-47 193.0 151 70.9
BraA09t38177Z Brassica rapa HOM05D004301 ORTHO05D005124 1.6e-47 193.0 151 70.9
BcaB01g01837 Brassica carinata HOM05D004301 ORTHO05D005124 3.5e-47 191.8 149 71.1
RcHm_v2.0_Chr4g0426811 Rosa chinensis HOM05D004301 ORTHO05D005124 4.5e-47 191.4 146 73.3
FvH4_4g21200 Fragaria vesca HOM05D004301 ORTHO05D005124 1.0e-46 190.3 148 71.6
EL10Ac8g20032 Beta vulgaris HOM05D004301 ORTHO05D005124 1.3e-46 189.9 168 65.5
Ah.09g234990 Amaranthus hybridus HOM05D004301 ORTHO05D005124 1.7e-46 189.5 176 63.1
Aa31LG9G9690 Aethionema arabicum HOM05D004301 ORTHO05D005124 6.5e-46 187.6 140 72.9
Nn7g37600 Nelumbo nucifera HOM05D004301 ORTHO05D005124 6.5e-46 187.6 112 90.2
PSO170G5652 Papaver somniferum HOM05D004301 ORTHO05D005124 6.5e-46 187.6 139 74.8
unitig_748.g7577 Utricularia gibba HOM05D004301 ORTHO05D005124 6.5e-46 187.6 140 72.9
BolC9t56147H Brassica oleracea HOM05D004301 ORTHO05D005124 1.1e-45 186.8 152 69.1
BcaC04g21325 Brassica carinata HOM05D004301 ORTHO05D005124 2.5e-45 185.7 155 67.7
C09p33120 Brassica napus HOM05D004301 ORTHO05D005124 2.5e-45 185.7 155 67.7
AUR62012686 Chenopodium quinoa HOM05D004301 ORTHO05D005124 1.8e-43 179.5 136 74.3
C02p40060 Brassica napus HOM05D004301 ORTHO05D005124 6.8e-43 177.6 135 73.3
ClCG02G024420 Citrullus lanatus HOM05D005410 ORTHO05D007394 6.8e-43 177.6 113 85.0
BraA02t07511Z Brassica rapa HOM05D004301 ORTHO05D005124 3.4e-42 175.3 134 72.4
arahy.Tifrunner.gnm1.ann1.RW8N71 Arachis hypogaea HOM05D004301 ORTHO05D005124 5.7e-42 174.5 114 79.8
SEGI_29072 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 1.3e-41 173.3 136 66.2
FAN20G0317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 8.3e-41 170.6 115 80.9
Mapoly0013s0130 Marchantia polymorpha HOM05D004301 ORTHO05D005124 4.5e-39 164.9 138 63.0
PSO017G1667 Papaver somniferum HOM05D004301 ORTHO05D005124 8.5e-38 160.6 113 78.8
Duzib192G0451 Durio zibethinus HOM05D004301 ORTHO05D005124 7.2e-37 157.5 112 75.9
SEGI_24906 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 1.2e-36 156.8 166 53.0
unitig_32.g11531 Utricularia gibba HOM05D004301 ORTHO05D005124 2.1e-36 156.0 119 73.9
AagrBONN_evm.TU.Sc2ySwM_362.2472 Anthoceros agrestis HOM05D004301 ORTHO05D005124 6.1e-36 154.5 139 63.3
PSO478G1674 Papaver somniferum HOM05D004301 ORTHO05D005124 2.3e-35 152.5 126 72.2
A02p25250 Brassica napus HOM05D004301 ORTHO05D005124 3.7e-33 145.2 135 63.7
BolC2t10033H Brassica oleracea HOM05D004301 ORTHO05D005124 3.1e-32 142.1 135 64.4
Actinidia26923 Actinidia chinensis HOM05D004301 ORTHO05D005124 4.1e-32 141.7 111 73.0
Prupe.1G108500 Prunus persica HOM05D004301 ORTHO05D005124 9.1e-32 140.6 131 62.6
Pp3c1_16690 Physcomitrium patens HOM05D004301 ORTHO05D005124 2.7e-31 139.0 136 56.6
SMO200G0228 Selaginella moellendorffii HOM05D004301 ORTHO05D005124 3.5e-31 138.7 155 56.1
Oeu033198.1 Olea europaea HOM05D004301 ORTHO05D005124 5.9e-31 137.9 97 77.3
CDE05G0994 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 1.3e-30 136.7 118 63.6
Zm00001eb173130 Zea mays HOM05D004301 ORTHO05D005124 3.8e-30 135.2 168 51.8
BcaC03g16234 Brassica carinata HOM05D004301 ORTHO05D005124 1.9e-29 132.9 109 69.7
Gorai.005G123500 Gossypium raimondii HOM05D004301 ORTHO05D005124 4.2e-29 131.7 81 88.9
CBR_g6572 Chara braunii HOM05D004301 ORTHO05D005124 1.0e-27 127.1 135 54.8
Gohir.D09G045050 Gossypium hirsutum HOM05D004301 ORTHO05D005124 1.5e-26 123.2 80 83.8
Nitab4.5_0003254g0080 Nicotiana tabacum HOM05D004301 ORTHO05D005124 1.5e-26 123.2 80 83.8
Gohir.D02G172033 Gossypium hirsutum HOM05D004301 ORTHO05D005124 2.0e-26 122.9 80 83.8
Psat5g160160 Pisum sativum HOM05D004301 ORTHO05D005124 7.5e-26 120.9 85 76.5
Gorai.006G117000 Gossypium raimondii HOM05D004301 ORTHO05D005124 9.8e-26 120.6 77 85.7
Gohir.D10G075550 Gossypium hirsutum HOM05D004301 ORTHO05D005124 2.2e-25 119.4 76 86.8
BcaC03g16233 Brassica carinata HOM05D004301 ORTHO05D005124 2.9e-25 119.0 115 63.5
Psat5g160080 Pisum sativum HOM05D004301 ORTHO05D005124 8.3e-25 117.5 85 75.3
BcaB05g23708 Brassica carinata HOM05D004301 ORTHO05D005124 9.2e-24 114.0 138 50.7
AUR62021971 Chenopodium quinoa HOM05D004301 ORTHO05D005124 1.6e-23 113.2 69 84.1
Eucgr.G02030 Eucalyptus grandis HOM05D004301 ORTHO05D005124 4.6e-23 111.7 69 87.0
CAN.G138.7 Capsicum annuum HOM05D004301 ORTHO05D005124 2.9e-22 109.0 132 50.8
FAN21G3317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 8.6e-22 107.5 69 78.3
Gorai.001G171600 Gossypium raimondii HOM05D001075 ORTHO05D001779 4.0e-19 98.6 100 60.0
Nitab4.5_0003254g0090 Nicotiana tabacum HOM05D004301 ORTHO05D005124 6.8e-19 97.8 58 86.2
Medtr1g107580 Medicago truncatula HOM05D004301 ORTHO05D005124 4.1e-16 88.6 70 67.1
RcHm_v2.0_Chr4g0426791 Rosa chinensis HOM05D004301 ORTHO05D005124 1.6e-15 86.7 77 62.3
Aqoxy3G02572 Aquilegia oxysepala HOM05D004301 ORTHO05D005124 2.7e-15 85.9 57 80.7
Os08g0135600 Oryza sativa ssp. japonica HOM05D004301 ORTHO05D005124 2.7e-15 85.9 69 69.6
MCO03G202 Micromonas commoda HOM05D004301 ORTHO05D005124 3.3e-13 79.0 130 38.5
A05p31460 Brassica napus HOM05D004301 ORTHO05D005124 2.0e-10 69.7 72 58.3
BraA05t21985Z Brassica rapa HOM05D004301 ORTHO05D005124 2.0e-10 69.7 72 58.3
SGA_v2.0_scaffold14G06848 Striga asiatica HOM05D004301 ORTHO05D005124 5.8e-10 68.2 61 57.4
C05p45830 Brassica napus HOM05D004301 ORTHO05D005124 5.1e-06 55.1 49 59.2
A06p38190 Brassica napus HOM05D004301 ORTHO05D005124 6.6e-06 54.7 110 41.8
C05p45820 Brassica napus HOM05D004301 ORTHO05D005124 6.6e-06 54.7 51 56.9
BraA06t26734Z Brassica rapa HOM05D004301 ORTHO05D005124 6.6e-06 54.7 110 41.8
A07p00860 Brassica napus HOM05D004301 ORTHO05D005124 8.6e-06 54.3 37 67.6
BraA07t27884Z Brassica rapa HOM05D004301 ORTHO05D005124 8.6e-06 54.3 37 67.6


User provided reference genes

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