Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G022200 Prunus persica HOM05D005226 ORTHO05D004666 5.8e-53 210.7 112 100.0
MD05G1344200 Malus domestica HOM05D005226 ORTHO05D004666 2.1e-42 175.6 114 85.1
MD00G1206700 Malus domestica HOM05D005226 ORTHO05D004666 2.2e-39 165.6 114 80.7
MD10G1320200 Malus domestica HOM05D005226 ORTHO05D004666 2.2e-39 165.6 114 80.7
RcHm_v2.0_Chr5g0003391 Rosa chinensis HOM05D005226 ORTHO05D004666 9.4e-35 150.2 100 79.0
FAN25G2807 Fragaria x ananassa HOM05D005226 ORTHO05D004666 1.4e-33 146.4 100 79.0
Duzib235G0113 Durio zibethinus HOM05D005226 ORTHO05D004666 5.1e-33 144.4 110 70.0
FvH4_3g02270 Fragaria vesca HOM05D005226 ORTHO05D004666 8.8e-33 143.7 100 78.0
COL.COLO4_31758 Corchorus olitorius HOM05D005226 ORTHO05D004666 1.1e-32 143.3 109 68.8
Duzib160G0401 Durio zibethinus HOM05D005226 ORTHO05D004666 2.0e-29 132.5 109 66.1
Thecc.06G219100 Theobroma cacao HOM05D005226 ORTHO05D004666 2.6e-29 132.1 103 69.9
Thecc.06G087600 Theobroma cacao HOM05D005226 ORTHO05D004666 3.2e-27 125.2 104 66.3
Medtr2g022960 Medicago truncatula HOM05D005226 ORTHO05D004666 4.2e-27 124.8 104 64.4
Ciclev10017536m.g Citrus clementina HOM05D005226 ORTHO05D004666 5.5e-27 124.4 109 65.1
Nn1g03549 Nelumbo nucifera HOM05D005226 ORTHO05D004666 9.4e-27 123.6 107 63.6
QL05p073519 Quercus lobata HOM05D005226 ORTHO05D004666 2.1e-26 122.5 107 61.7
QL05p073756 Quercus lobata HOM05D005226 ORTHO05D004666 2.1e-26 122.5 107 61.7
TPR.G7637 Trifolium pratense HOM05D005226 ORTHO05D004666 2.1e-26 122.5 104 62.5
Gohir.D10G013300 Gossypium hirsutum HOM05D005226 ORTHO05D004666 2.7e-26 122.1 106 59.4
Gorai.011G015000 Gossypium raimondii HOM05D005226 ORTHO05D004666 2.7e-26 122.1 106 59.4
Gohir.A05G169600 Gossypium hirsutum HOM05D005226 ORTHO05D004666 6.1e-26 120.9 107 65.4
Gorai.009G178000 Gossypium raimondii HOM05D005226 ORTHO05D004666 6.1e-26 120.9 107 65.4
Duzib192G0836 Durio zibethinus HOM05D005226 ORTHO05D004666 8.0e-26 120.6 107 63.6
Gohir.A10G013400 Gossypium hirsutum HOM05D005226 ORTHO05D004666 8.0e-26 120.6 106 59.4
Manes.16G008100 Manihot esculenta HOM05D005226 ORTHO05D004666 1.8e-25 119.4 116 60.3
Sabra04G0009100 Salix brachista HOM05D005226 ORTHO05D004666 1.8e-25 119.4 105 67.6
ClCG01G022050 Citrullus lanatus HOM05D005226 ORTHO05D004666 2.3e-25 119.0 95 64.2
Gohir.D05G172800 Gossypium hirsutum HOM05D005226 ORTHO05D004666 5.2e-25 117.9 107 64.5
Potri.004G016800 Populus trichocarpa HOM05D005226 ORTHO05D004666 8.8e-25 117.1 109 65.1
Glyma.15G107000 Glycine max HOM05D005226 ORTHO05D004666 2.0e-24 115.9 95 61.1
TAR624G0719 Trochodendron aralioides HOM05D005226 ORTHO05D004666 4.4e-24 114.8 107 57.9
Glyma.13G205400 Glycine max HOM05D005226 ORTHO05D004666 5.7e-24 114.4 95 61.1
Lj6g0027274 Lotus japonicus HOM05D005226 ORTHO05D004666 9.7e-24 113.6 104 59.6
CiPaw.09G090600 Carya illinoinensis HOM05D005226 ORTHO05D004666 1.7e-23 112.8 104 64.4
TAR627G0695 Trochodendron aralioides HOM05D005226 ORTHO05D004666 1.7e-23 112.8 84 69.0
Aqoxy1G03603 Aquilegia oxysepala HOM05D005226 ORTHO05D004666 2.2e-23 112.5 109 59.6
Nn5g29365 Nelumbo nucifera HOM05D005226 ORTHO05D004666 2.8e-23 112.1 113 59.3
CiPaw.10G070100 Carya illinoinensis HOM05D005226 ORTHO05D004666 3.7e-23 111.7 97 64.9
CsaV3_6G049110 Cucumis sativus L. HOM05D005226 ORTHO05D004666 3.7e-23 111.7 109 54.1
Lalb_Chr15g0087551 Lupinus albus HOM05D005226 ORTHO05D004666 3.7e-23 111.7 102 57.8
Potri.011G002100 Populus trichocarpa HOM05D005226 ORTHO05D004666 3.7e-23 111.7 105 65.7
CANSAT56G2875 Cannabis sativa HOM05D005226 ORTHO05D004666 1.8e-22 109.4 97 62.9
MELO3C007384.2 Cucumis melo HOM05D005226 ORTHO05D004666 2.4e-22 109.0 109 54.1
Phvul.006G150300 Phaseolus vulgaris HOM05D005226 ORTHO05D004666 3.1e-22 108.6 108 55.6
Cc09_g01800 Coffea canephora HOM05D005226 ORTHO05D004666 5.3e-22 107.8 108 54.6
Cfa000235 Carpinus fangiana HOM05D005226 ORTHO05D004666 1.6e-21 106.3 107 59.8
Sed0005209 Sechium edule HOM05D005226 ORTHO05D004666 1.6e-21 106.3 95 61.1
CAN.G569.14 Capsicum annuum HOM05D005226 ORTHO05D004666 2.0e-21 105.9 112 50.0
TWI38G0534 Tripterygium wilfordii HOM05D005226 ORTHO05D004666 2.0e-21 105.9 100 58.0
Sed0011520 Sechium edule HOM05D005226 ORTHO05D004666 2.6e-21 105.5 114 54.4
ClCG03G004790 Citrullus lanatus HOM05D005226 ORTHO05D004666 4.5e-21 104.8 94 60.6
Dinv20040 Davidia involucrata HOM05D005226 ORTHO05D004666 4.5e-21 104.8 90 66.7
VMungo0540G0286 Vigna mungo HOM05D005226 ORTHO05D004666 4.5e-21 104.8 95 53.7
Cfa021903 Carpinus fangiana HOM05D005226 ORTHO05D004666 7.7e-21 104.0 109 58.7
Haze_06787 Corylus avellana HOM05D005226 ORTHO05D004666 7.7e-21 104.0 114 58.8
Sed0027353 Sechium edule HOM05D005226 ORTHO05D004666 7.7e-21 104.0 96 62.5
Lalb_Chr18g0056301 Lupinus albus HOM05D005226 ORTHO05D004666 1.7e-20 102.8 97 55.7
Rhsim02G0108700 Rhododendron simsii HOM05D005226 ORTHO05D004666 1.7e-20 102.8 89 61.8
Rhsim02G0109500 Rhododendron simsii HOM05D005226 ORTHO05D004666 1.7e-20 102.8 89 61.8
MELO3C002462.2 Cucumis melo HOM05D005226 ORTHO05D004666 3.8e-20 101.7 101 53.5
Haze_09878 Corylus avellana HOM05D005226 ORTHO05D004666 5.0e-20 101.3 110 59.1
Eucgr.E04074 Eucalyptus grandis HOM05D005226 ORTHO05D004666 1.1e-19 100.1 91 59.3
Hma1.2p1_1142F.1_g260990 Hydrangea macrophylla HOM05D005226 ORTHO05D004666 1.9e-19 99.4 96 56.2
CsaV3_1G010830 Cucumis sativus L. HOM05D005226 ORTHO05D004666 2.5e-19 99.0 95 55.8
Eucgr.D01311 Eucalyptus grandis HOM05D005226 ORTHO05D004666 4.2e-19 98.2 107 53.3
Eucgr.E04072 Eucalyptus grandis HOM05D005226 ORTHO05D004666 4.2e-19 98.2 91 58.2
Eucgr.D01314 Eucalyptus grandis HOM05D005226 ORTHO05D004666 1.2e-18 96.7 107 52.3
Aqoxy4G01362 Aquilegia oxysepala HOM05D005226 ORTHO05D004666 1.6e-18 96.3 82 61.0
Nitab4.5_0003254g0050 Nicotiana tabacum HOM05D005226 ORTHO05D004666 1.6e-18 96.3 98 56.1
Rhsim02G0108200 Rhododendron simsii HOM05D005226 ORTHO05D004666 2.1e-18 95.9 90 57.8
Eucgr.L02166 Eucalyptus grandis HOM05D005226 ORTHO05D004666 2.7e-18 95.5 107 52.3
Migut.M01309 Erythranthe guttata HOM05D005226 ORTHO05D004666 8.0e-18 94.0 113 45.1
DCAR_004212 Daucus carota HOM05D005226 ORTHO05D004666 1.4e-17 93.2 100 54.0
Eucgr.E04071 Eucalyptus grandis HOM05D005226 ORTHO05D004666 1.4e-17 93.2 91 56.0
Nitab4.5_0000005g0440 Nicotiana tabacum HOM05D005226 ORTHO05D004666 1.4e-17 93.2 116 51.7
Solyc02g080450.1 Solanum lycopersicum HOM05D005226 ORTHO05D004666 1.4e-17 93.2 106 50.9
PGR042G2779 Punica granatum HOM05D005226 ORTHO05D004666 2.3e-17 92.4 96 54.2
DCAR_008143 Daucus carota HOM05D005226 ORTHO05D004666 3.0e-17 92.0 96 57.3
PGR004G1778 Punica granatum HOM05D005226 ORTHO05D004666 4.0e-17 91.7 105 49.5
Sopen02g025140 Solanum pennellii HOM05D005226 ORTHO05D004666 4.0e-17 91.7 106 50.0
Atru.chr10.2207 Acer truncatum HOM05D005226 ORTHO05D004666 5.2e-17 91.3 116 49.1
Nitab4.5_0006137g0040 Nicotiana tabacum HOM05D005226 ORTHO05D004666 1.5e-16 89.7 99 53.5
Gohir.D06G153975 Gossypium hirsutum HOM05D005226 ORTHO05D004666 3.3e-16 88.6 119 50.4
Gorai.010G180000 Gossypium raimondii HOM05D005226 ORTHO05D004666 3.3e-16 88.6 119 49.6
Oeu051213.1 Olea europaea HOM05D005226 ORTHO05D004666 4.4e-16 88.2 87 54.0
Gohir.A06G148050 Gossypium hirsutum HOM05D005226 ORTHO05D004666 1.3e-15 86.7 120 49.2
PGSC0003DMG400004522 Solanum tuberosum HOM05D005226 ORTHO05D004666 4.8e-15 84.7 94 51.1
PGSC0003DMG400016491 Solanum tuberosum HOM05D005226 ORTHO05D004666 4.8e-15 84.7 101 49.5
Oeu033894.1 Olea europaea HOM05D005226 ORTHO05D004666 6.3e-15 84.3 107 47.7
PSO832G1518 Papaver somniferum HOM05D005226 ORTHO05D004666 1.8e-14 82.8 94 50.0
Rhsim02G0109000 Rhododendron simsii HOM05D005226 ORTHO05D004666 1.8e-14 82.8 76 59.2
MSTRG.13145 Avicennia marina HOM05D005226 ORTHO05D004666 2.4e-14 82.4 78 57.7
SGA_v2.0_scaffold4G01918 Striga asiatica HOM05D005226 ORTHO05D004666 3.1e-14 82.0 109 43.1
Peaxi162Scf00565g00021 Petunia axillaris HOM05D005226 ORTHO05D004666 2.0e-13 79.3 81 49.4
Carub.0001s1129 Capsella rubella HOM05D005226 ORTHO05D004666 7.7e-13 77.4 114 46.5
PSO210G5560 Papaver somniferum HOM05D005226 ORTHO05D004666 7.7e-13 77.4 94 47.9
Nitab4.5_0000389g0060 Nicotiana tabacum HOM05D005226 ORTHO05D004666 1.3e-12 76.6 84 53.6
SGA_v2.0_scaffold89G27461 Striga asiatica HOM05D005226 ORTHO05D004666 1.3e-12 76.6 109 38.5
Peaxi162Scf00262g00094 Petunia axillaris HOM05D005226 ORTHO05D004666 1.7e-12 76.3 83 51.8
MBI18_g02740_MAGBIO Magnolia biondii HOM05D005226 ORTHO05D004666 2.2e-12 75.9 99 44.4
THA.LOC104818840 Tarenaya hassleriana HOM05D005226 ORTHO05D004666 3.8e-12 75.1 113 46.9
Thhalv10009573m.g Eutrema salsugineum HOM05D005226 ORTHO05D004666 6.5e-12 74.3 113 43.4
Glyma.18G063800 Glycine max HOM05D005226 ORTHO05D004666 8.5e-12 73.9 90 48.9
AT1G11655 Arabidopsis thaliana HOM05D005226 ORTHO05D004666 1.9e-11 72.8 109 45.0
SalBow8G4932 Salvia bowleyana HOM05D005226 ORTHO05D004666 2.5e-11 72.4 97 45.4
BcaB01g02575 Brassica carinata HOM05D009543 ORTHO05D004666 5.5e-11 71.2 115 40.9
arahy.Tifrunner.gnm1.ann1.0GES1T Arachis hypogaea HOM05D005226 ORTHO05D004666 9.4e-11 70.5 63 65.1
arahy.Tifrunner.gnm1.ann1.1P1WAU Arachis hypogaea HOM05D005226 ORTHO05D004666 9.4e-11 70.5 63 65.1
CARHR011960 Cardamine hirsuta HOM05D005226 ORTHO05D004666 9.4e-11 70.5 103 42.7
HanXRQChr16g0515991 Helianthus annuus HOM05D005226 ORTHO05D004666 9.4e-11 70.5 84 50.0
C08p14770 Brassica napus HOM05D005226 ORTHO05D004666 1.2e-10 70.1 114 41.2
BcaNung04807 Brassica carinata HOM05D005226 ORTHO05D004666 1.6e-10 69.7 109 40.4
C03p36430 Brassica napus HOM05D009543 ORTHO05D004666 1.6e-10 69.7 122 39.3
BolC3t15955H Brassica oleracea HOM05D009543 ORTHO05D004666 1.6e-10 69.7 122 39.3
Lsat_1_v5_gn_4_59601 Lactuca sativa HOM05D005226 ORTHO05D004666 2.1e-10 69.3 83 49.4
Medtr3g463740 Medicago truncatula HOM05D005226 ORTHO05D004666 2.1e-10 69.3 71 52.1
A03p30180 Brassica napus HOM05D009543 ORTHO05D004666 2.7e-10 68.9 122 38.5
BraA03t12202Z Brassica rapa HOM05D009543 ORTHO05D004666 2.7e-10 68.9 122 38.5
AL1G22790 Arabidopsis lyrata HOM05D005226 ORTHO05D004666 4.7e-10 68.2 113 44.2
BolC5t29718H Brassica oleracea HOM05D005226 ORTHO05D004666 8.0e-10 67.4 109 40.4
ECA234G1355 Erigeron canadensis HOM05D005226 ORTHO05D004666 1.0e-09 67.0 89 46.1
AT4G04745 Arabidopsis thaliana HOM05D009543 ORTHO05D004666 1.8e-09 66.2 78 47.4
A06p08210 Brassica napus HOM05D005226 ORTHO05D004666 1.8e-09 66.2 109 40.4
BraA06t24021Z Brassica rapa HOM05D005226 ORTHO05D004666 1.8e-09 66.2 109 40.4
Thhalv10029169m.g Eutrema salsugineum HOM05D009543 ORTHO05D004666 1.8e-09 66.2 78 47.4
BcaC07g38677 Brassica carinata HOM05D005226 ORTHO05D004666 2.3e-09 65.9 114 41.2
C08p48100 Brassica napus HOM05D005226 ORTHO05D004666 2.3e-09 65.9 113 38.1
BolC8t49112H Brassica oleracea HOM05D005226 ORTHO05D004666 2.3e-09 65.9 114 41.2
Aa31LG1G3110 Aethionema arabicum HOM05D005226 ORTHO05D004666 3.0e-09 65.5 68 50.0
A09p64400 Brassica napus HOM05D005226 ORTHO05D004666 3.0e-09 65.5 109 39.4
BraA09t41784Z Brassica rapa HOM05D005226 ORTHO05D004666 3.0e-09 65.5 109 39.4
Carub.0006s3264 Capsella rubella HOM05D009543 ORTHO05D004666 3.0e-09 65.5 82 45.1
Peaxi162Scf00565g00036 Petunia axillaris HOM05D005226 ORTHO05D004666 3.0e-09 65.5 81 50.6
AL6G48230 Arabidopsis lyrata HOM05D009543 ORTHO05D004666 4.0e-09 65.1 78 47.4
THA.LOC104806304 Tarenaya hassleriana HOM05D005226 ORTHO05D004666 4.0e-09 65.1 81 45.7
BcaC09g51183 Brassica carinata HOM05D009543 ORTHO05D004666 6.8e-09 64.3 78 46.2
A08p33360 Brassica napus HOM05D005226 ORTHO05D004666 6.8e-09 64.3 113 41.6
C01p15970 Brassica napus HOM05D009543 ORTHO05D004666 6.8e-09 64.3 78 46.2
BolC1t01557H Brassica oleracea HOM05D009543 ORTHO05D004666 6.8e-09 64.3 78 46.2
ATR0752G088 Amborella trichopoda HOM05D005226 ORTHO05D004666 1.2e-08 63.5 106 40.6
AL7G31950 Arabidopsis lyrata HOM05D009543 ORTHO05D004666 1.2e-08 63.5 77 48.1
BcaC07g41768 Brassica carinata HOM05D005226 ORTHO05D004666 1.2e-08 63.5 100 38.0
BcaC05g25032 Brassica carinata HOM05D005226 ORTHO05D004666 1.5e-08 63.2 109 39.4
BcaNung02262 Brassica carinata HOM05D009543 ORTHO05D004666 1.5e-08 63.2 78 44.9
CARHR252810 Cardamine hirsuta HOM05D009543 ORTHO05D004666 1.5e-08 63.2 122 38.5
Sp6g04195 Schrenkiella parvula HOM05D009543 ORTHO05D004666 1.5e-08 63.2 125 36.8
BraA01t01269Z Brassica rapa HOM05D009543 ORTHO05D004666 2.6e-08 62.4 78 44.9
Thhalv10026583m.g Eutrema salsugineum HOM05D009543 ORTHO05D004666 3.4e-08 62.0 76 47.4
TPR.G21187 Trifolium pratense HOM05D005226 ORTHO05D004666 3.4e-08 62.0 62 51.6
arahy.Tifrunner.gnm1.ann1.89FC4C Arachis hypogaea HOM05D005226 ORTHO05D004666 4.4e-08 61.6 101 42.6
BraA08t35253Z Brassica rapa HOM05D005226 ORTHO05D004666 4.4e-08 61.6 113 40.7
C05p09770 Brassica napus HOM05D005226 ORTHO05D004666 5.7e-08 61.2 109 39.4
BcaB03g13244 Brassica carinata HOM05D005226 ORTHO05D004666 7.5e-08 60.8 89 40.4
BcaB08g37410 Brassica carinata HOM05D005226 ORTHO05D004666 7.5e-08 60.8 100 38.0
CARHR228690 Cardamine hirsuta HOM05D009543 ORTHO05D004666 7.5e-08 60.8 97 38.1
A09p26130 Brassica napus HOM05D009543 ORTHO05D004666 3.7e-07 58.5 79 43.0
BraA09t38180Z Brassica rapa HOM05D009543 ORTHO05D004666 3.7e-07 58.5 79 43.0
BcaB01g01831 Brassica carinata HOM05D009543 ORTHO05D004666 6.3e-07 57.8 78 43.6
AT4G21902 Arabidopsis thaliana HOM05D009543 ORTHO05D004666 8.3e-07 57.4 77 41.6
BcaC04g21321 Brassica carinata HOM05D009543 ORTHO05D004666 8.3e-07 57.4 78 42.3
C09p33170 Brassica napus HOM05D009543 ORTHO05D004666 8.3e-07 57.4 78 42.3
BolC9t56151H Brassica oleracea HOM05D009543 ORTHO05D004666 8.3e-07 57.4 78 42.3
Aa31LG6G3890 Aethionema arabicum HOM05D005226 ORTHO05D004666 1.8e-06 56.2 82 46.3
unitig_26.g9388 Utricularia gibba HOM05D005226 ORTHO05D004666 4.1e-06 55.1 88 40.9
Nitab4.5_0000389g0090 Nicotiana tabacum HOM05D005226 ORTHO05D004666 9.1e-06 53.9 62 48.4
Sp7g20070 Schrenkiella parvula HOM05D009543 ORTHO05D004666 9.1e-06 53.9 78 41.0


User provided reference genes

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