Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G021400 Prunus persica HOM05D000355 ORTHO05D000227 9.8e-89 330.1 166 100.0
MD10G1320900 Malus domestica HOM05D000355 ORTHO05D000227 1.7e-64 249.6 154 81.2
MD05G1345500 Malus domestica HOM05D000355 ORTHO05D000227 2.9e-64 248.8 154 80.5
RcHm_v2.0_Chr5g0003211 Rosa chinensis HOM05D000355 ORTHO05D000227 1.8e-58 229.6 153 78.4
FvH4_3g02140 Fragaria vesca HOM05D000355 ORTHO05D000227 1.2e-54 216.9 156 75.0
FAN21G2006 Fragaria x ananassa HOM05D000355 ORTHO05D000227 2.7e-54 215.7 156 75.0
FAN25G1866 Fragaria x ananassa HOM05D000355 ORTHO05D000227 1.0e-53 213.8 156 74.4
Cfa000230 Carpinus fangiana HOM05D000355 ORTHO05D000227 3.3e-44 182.2 157 66.2
Haze_06796 Corylus avellana HOM05D000355 ORTHO05D000227 2.1e-43 179.5 155 66.5
TWI38G1631 Tripterygium wilfordii HOM05D000355 ORTHO05D000227 2.8e-43 179.1 157 63.1
Thecc.06G219800 Theobroma cacao HOM05D000355 ORTHO05D000227 1.8e-42 176.4 161 62.7
Duzib235G0252 Durio zibethinus HOM05D000355 ORTHO05D000227 4.0e-42 175.3 159 62.9
CiPaw.09G091200 Carya illinoinensis HOM05D000355 ORTHO05D000227 6.9e-42 174.5 163 62.6
Ciclev10016695m.g Citrus clementina HOM05D000355 ORTHO05D000227 1.3e-40 170.2 156 62.8
Dinv13886 Davidia involucrata HOM05D001857 ORTHO05D004244 1.7e-40 169.9 153 61.4
TWI63G0815 Tripterygium wilfordii HOM05D000355 ORTHO05D000227 2.9e-40 169.1 157 61.8
COL.COLO4_31766 Corchorus olitorius HOM05D000355 ORTHO05D000227 3.8e-40 168.7 164 61.0
Duzib192G1078 Durio zibethinus HOM05D000355 ORTHO05D000227 1.9e-39 166.4 161 60.2
Manes.16G007600 Manihot esculenta HOM05D000355 ORTHO05D000227 2.4e-39 166.0 163 60.7
Manes.17G038700 Manihot esculenta HOM05D000355 ORTHO05D000227 2.7e-38 162.5 163 58.9
Duzib160G0644 Durio zibethinus HOM05D000355 ORTHO05D000227 4.6e-38 161.8 161 58.4
Gohir.D09G069000 Gossypium hirsutum HOM05D000355 ORTHO05D000227 6.0e-38 161.4 158 58.9
Gorai.006G083200 Gossypium raimondii HOM05D000355 ORTHO05D000227 6.0e-38 161.4 158 58.9
Sopen02g025200 Solanum pennellii HOM05D000355 ORTHO05D000227 1.0e-37 160.6 162 58.6
Solyc02g080510.1 Solanum lycopersicum HOM05D000355 ORTHO05D000227 2.3e-37 159.5 159 58.5
Gohir.A05G170000 Gossypium hirsutum HOM05D000355 ORTHO05D000227 3.9e-37 158.7 163 57.7
TWI38G1026 Tripterygium wilfordii HOM05D000355 ORTHO05D000227 5.1e-37 158.3 151 62.3
Atru.chr10.2215 Acer truncatum HOM05D000355 ORTHO05D000227 8.7e-37 157.5 175 55.4
PGSC0003DMG400016455 Solanum tuberosum HOM05D000355 ORTHO05D000227 1.1e-36 157.1 160 57.5
Potri.011G003300 Populus trichocarpa HOM05D000355 ORTHO05D000227 1.5e-36 156.8 163 55.8
Gorai.009G178300 Gossypium raimondii HOM05D000355 ORTHO05D000227 2.5e-36 156.0 163 58.3
Gohir.A09G069100 Gossypium hirsutum HOM05D000355 ORTHO05D000227 3.3e-36 155.6 158 57.6
DCAR_004215 Daucus carota HOM05D000355 ORTHO05D000227 4.3e-36 155.2 154 57.8
Nitab4.5_0011951g0010 Nicotiana tabacum HOM05D000355 ORTHO05D000227 1.6e-35 153.3 160 59.4
CANSAT56G1471 Cannabis sativa HOM05D000355 ORTHO05D000227 2.1e-35 152.9 164 59.8
Gohir.D05G173100 Gossypium hirsutum HOM05D000355 ORTHO05D000227 2.1e-35 152.9 163 57.1
Nn1g03533 Nelumbo nucifera HOM05D000355 ORTHO05D000227 3.7e-35 152.1 153 56.2
Actinidia26918 Actinidia chinensis HOM05D000355 ORTHO05D000227 6.2e-35 151.4 148 59.5
Rhsim13G0154400 Rhododendron simsii HOM05D000355 ORTHO05D000227 6.2e-35 151.4 164 55.5
CSS0010485 Camellia sinensis var. sinensis HOM05D000355 ORTHO05D000227 1.4e-34 150.2 158 58.9
Nitab4.5_0000005g0470 Nicotiana tabacum HOM05D000355 ORTHO05D000227 2.4e-34 149.4 156 59.6
Nitab4.5_0000389g0020 Nicotiana tabacum HOM05D000355 ORTHO05D000227 2.4e-34 149.4 156 56.4
Sabra04G0007900 Salix brachista HOM05D000355 ORTHO05D000227 3.1e-34 149.1 164 56.7
Sed0010791 Sechium edule HOM05D000355 ORTHO05D000227 3.1e-34 149.1 155 58.7
MELO3C007387.2 Cucumis melo HOM05D000355 ORTHO05D000227 6.9e-34 147.9 158 57.6
CsaV3_6G049080 Cucumis sativus L. HOM05D000355 ORTHO05D000227 9.0e-34 147.5 158 57.6
Rhsim02G0107100 Rhododendron simsii HOM05D000355 ORTHO05D000227 1.5e-33 146.7 156 57.1
CiPaw.10G070600 Carya illinoinensis HOM05D000355 ORTHO05D000227 2.0e-33 146.4 160 55.0
Nitab4.5_0006137g0010 Nicotiana tabacum HOM05D000355 ORTHO05D000227 5.8e-33 144.8 160 56.9
Potri.004G015700 Populus trichocarpa HOM05D000355 ORTHO05D000227 5.8e-33 144.8 161 57.1
Gorai.011G014400 Gossypium raimondii HOM05D000355 ORTHO05D000227 1.7e-32 143.3 177 52.0
PGSC0003DMG400012665 Solanum tuberosum HOM05D000355 ORTHO05D000227 1.7e-32 143.3 157 57.3
Gohir.D10G012700 Gossypium hirsutum HOM05D000355 ORTHO05D000227 2.2e-32 142.9 177 52.0
CAN.G569.11 Capsicum annuum HOM05D000355 ORTHO05D000227 6.5e-32 141.4 155 55.5
Lsat_1_v5_gn_4_60620 Lactuca sativa HOM05D000355 ORTHO05D000227 1.1e-31 140.6 156 54.5
Sed0010808 Sechium edule HOM05D000355 ORTHO05D000227 1.1e-31 140.6 155 56.8
Gohir.A10G012800 Gossypium hirsutum HOM05D000355 ORTHO05D000227 1.4e-31 140.2 164 56.1
Peaxi162Scf00262g00123 Petunia axillaris HOM05D000355 ORTHO05D000227 2.5e-31 139.4 165 55.8
Migut.H01570 Erythranthe guttata HOM05D000355 ORTHO05D000227 3.2e-31 139.0 165 55.8
ClCG01G022020 Citrullus lanatus HOM05D000355 ORTHO05D000227 4.2e-31 138.7 159 56.6
Ca_00653_v3 Cicer arietinum L. HOM05D000355 ORTHO05D000227 7.1e-31 137.9 161 54.7
TPR.G40850 Trifolium pratense HOM05D000355 ORTHO05D000227 1.2e-30 137.1 167 54.5
DCAR_008151 Daucus carota HOM05D000355 ORTHO05D000227 1.6e-30 136.7 158 52.5
CSS0035426 Camellia sinensis var. sinensis HOM05D000355 ORTHO05D000227 4.6e-30 135.2 161 54.7
Peaxi162Scf00331g00061 Petunia axillaris HOM05D000355 ORTHO05D000227 4.6e-30 135.2 155 56.8
Cpa.g.sc152.10 Carica papaya HOM05D000355 ORTHO05D000227 6.0e-30 134.8 164 54.3
Lalb_Chr20g0118621 Lupinus albus HOM05D000355 ORTHO05D000227 6.0e-30 134.8 160 55.6
Sed0025693 Sechium edule HOM05D000355 ORTHO05D000227 1.0e-29 134.0 155 56.8
Glyma.15G107700 Glycine max HOM05D000355 ORTHO05D000227 1.3e-29 133.7 152 54.6
Solyc02g032800.1 Solanum lycopersicum HOM05D000355 ORTHO05D000227 1.3e-29 133.7 159 55.3
Glyma.13G205000 Glycine max HOM05D000355 ORTHO05D000227 1.8e-29 133.3 148 56.8
Sabra11G0001400 Salix brachista HOM05D000355 ORTHO05D000227 1.8e-29 133.3 156 52.6
HanXRQChr16g0516141 Helianthus annuus HOM05D000355 ORTHO05D000227 2.3e-29 132.9 157 53.5
arahy.Tifrunner.gnm1.ann1.8F6M4K Arachis hypogaea HOM05D000355 ORTHO05D000227 5.1e-29 131.7 153 52.9
VMungo0540G1899 Vigna mungo HOM05D000355 ORTHO05D000227 8.7e-29 131.0 155 52.9
MSTRG.13144 Avicennia marina HOM05D000355 ORTHO05D000227 1.9e-28 129.8 163 54.6
Lalb_Chr18g0056341 Lupinus albus HOM05D000355 ORTHO05D000227 3.3e-28 129.0 159 54.1
arahy.Tifrunner.gnm1.ann1.3A3GYI Arachis hypogaea HOM05D000355 ORTHO05D000227 4.3e-28 128.6 153 52.9
arahy.Tifrunner.gnm1.ann1.JF0SCD Arachis hypogaea HOM05D000355 ORTHO05D000227 7.4e-28 127.9 164 48.8
Lj2P269T16 Lonicera japonica HOM05D000355 ORTHO05D000227 7.4e-28 127.9 157 52.9
QL05p073277 Quercus lobata HOM05D000355 ORTHO05D000227 7.4e-28 127.9 184 48.9
SGA_v2.0_scaffold89G27462 Striga asiatica HOM05D000355 ORTHO05D000227 7.4e-28 127.9 165 49.7
Hma1.2p1_1047F.1_g251600 Hydrangea macrophylla HOM05D000355 ORTHO05D000227 9.6e-28 127.5 156 53.8
TAR624G0410 Trochodendron aralioides HOM05D000355 ORTHO05D000227 1.3e-27 127.1 153 52.3
MSTRG.14640 Avicennia marina HOM05D000355 ORTHO05D000227 2.8e-27 125.9 158 52.5
Migut.M01314 Erythranthe guttata HOM05D000355 ORTHO05D000227 4.8e-27 125.2 159 49.7
PGR042G0836 Punica granatum HOM05D000355 ORTHO05D000227 4.8e-27 125.2 177 49.7
arahy.Tifrunner.gnm1.ann1.85V0ID Arachis hypogaea HOM05D000355 ORTHO05D000227 1.4e-26 123.6 164 47.6
Lj1g0021211 Lotus japonicus HOM05D000355 ORTHO05D000227 2.4e-26 122.9 166 51.8
Oeu037364.1 Olea europaea HOM05D000355 ORTHO05D000227 2.4e-26 122.9 164 50.6
Oeu063915.2 Olea europaea HOM05D000355 ORTHO05D000227 2.4e-26 122.9 165 49.1
ECA236G4353 Erigeron canadensis HOM05D000355 ORTHO05D000227 3.1e-26 122.5 154 50.6
Psat1g181120 Pisum sativum HOM05D000355 ORTHO05D000227 3.1e-26 122.5 159 52.8
Phvul.006G150000 Phaseolus vulgaris HOM05D000355 ORTHO05D000227 4.0e-26 122.1 155 50.3
SalBow1G8099 Salvia bowleyana HOM05D000355 ORTHO05D000227 4.0e-26 122.1 158 53.2
SGA_v2.0_scaffold4313G54467 Striga asiatica HOM05D000355 ORTHO05D000227 4.0e-26 122.1 156 51.9
Nn024s41557 Nelumbo nucifera HOM05D000355 ORTHO05D000227 6.9e-26 121.3 156 48.7
Medtr2g023070 Medicago truncatula HOM05D000355 ORTHO05D000227 9.0e-26 120.9 172 50.6
TAR626G1224 Trochodendron aralioides HOM05D000355 ORTHO05D000227 1.5e-25 120.2 150 51.3
Hma1.2p1_0091F.1_g046400 Hydrangea macrophylla HOM05D000355 ORTHO05D000227 2.0e-25 119.8 161 52.2
Sopen02g011200 Solanum pennellii HOM05D000355 ORTHO05D000227 2.0e-25 119.8 150 53.3
Lj6g0017882 Lotus japonicus HOM05D000355 ORTHO05D000227 3.4e-25 119.0 162 50.0
SalBow8G3224 Salvia bowleyana HOM05D000355 ORTHO05D000227 3.4e-25 119.0 152 50.0
MSTRG.7216 Avicennia marina HOM05D000355 ORTHO05D000227 1.3e-24 117.1 153 51.0
Oeu033200.1 Olea europaea HOM05D000355 ORTHO05D000227 1.7e-24 116.7 166 49.4
Aa31LG1G3070 Aethionema arabicum HOM05D000355 ORTHO05D000227 2.2e-24 116.3 157 47.8
Sopen02g011090 Solanum pennellii HOM05D000355 ORTHO05D000227 3.8e-24 115.5 157 51.0
Aqoxy1G02165 Aquilegia oxysepala HOM05D000355 ORTHO05D000227 5.0e-24 115.2 163 43.6
Ah.09g234950 Amaranthus hybridus HOM05D000355 ORTHO05D000227 6.5e-24 114.8 176 47.2
HanXRQChr05g0129441 Helianthus annuus HOM05D000355 ORTHO05D000227 6.5e-24 114.8 157 52.2
Lsat_1_v5_gn_7_15820 Lactuca sativa HOM05D000355 ORTHO05D000227 5.5e-23 111.7 160 47.5
PSO675G3322 Papaver somniferum HOM05D000355 ORTHO05D000227 7.1e-23 111.3 172 42.4
EL10Ac8g20050 Beta vulgaris HOM05D000355 ORTHO05D000227 2.1e-22 109.8 172 45.9
PSO541G1048 Papaver somniferum HOM05D000355 ORTHO05D000227 2.1e-22 109.8 175 41.1
AT1G11700 Arabidopsis thaliana HOM05D000355 ORTHO05D000227 4.6e-22 108.6 161 47.8
Sp1g10310 Schrenkiella parvula HOM05D000355 ORTHO05D000227 7.9e-22 107.8 156 46.2
MBI18_g14478_MAGBIO Magnolia biondii HOM05D000355 ORTHO05D000227 1.0e-21 107.5 181 44.2
PGR004G2354 Punica granatum HOM05D000355 ORTHO05D000227 1.0e-21 107.5 165 47.3
BcaC07g41764 Brassica carinata HOM05D000355 ORTHO05D000227 1.3e-21 107.1 157 47.8
BolC8t52340H Brassica oleracea HOM05D000355 ORTHO05D000227 1.8e-21 106.7 157 47.8
Thhalv10008790m.g Eutrema salsugineum HOM05D000355 ORTHO05D000227 5.1e-21 105.1 160 45.0
Psat0s762g0080 Pisum sativum HOM05D000355 ORTHO05D000227 5.1e-21 105.1 158 44.3
Carub.0001s1134 Capsella rubella HOM05D000355 ORTHO05D000227 6.7e-21 104.8 158 46.2
C08p48030 Brassica napus HOM05D000355 ORTHO05D000227 8.7e-21 104.4 154 47.4
Phvul.003G078300 Phaseolus vulgaris HOM05D000355 ORTHO05D000227 8.7e-21 104.4 159 48.4
AL1G22840 Arabidopsis lyrata HOM05D000355 ORTHO05D000227 1.1e-20 104.0 158 46.8
MBI02_g07161_MAGBIO Magnolia biondii HOM05D000355 ORTHO05D000227 1.1e-20 104.0 152 50.0
Ca_21087_v3 Cicer arietinum L. HOM05D000355 ORTHO05D000227 1.5e-20 103.6 155 48.4
Ca_30195_v3 Cicer arietinum L. HOM05D000355 ORTHO05D000227 1.5e-20 103.6 155 48.4
Lalb_Chr15g0087571 Lupinus albus HOM05D000355 ORTHO05D000227 1.5e-20 103.6 165 46.7
Sc05g0009190 Simmondsia chinensis HOM05D000355 ORTHO05D000227 1.5e-20 103.6 157 46.5
VMungo1215G0011 Vigna mungo HOM05D000355 ORTHO05D000227 3.3e-20 102.4 165 46.7
AUR62012702 Chenopodium quinoa HOM05D000355 ORTHO05D000227 5.7e-20 101.7 173 43.9
AT1G61930 Arabidopsis thaliana HOM05D000355 ORTHO05D000227 9.7e-20 100.9 157 45.2
CARHR012010 Cardamine hirsuta HOM05D000355 ORTHO05D000227 1.6e-19 100.1 159 47.2
Glyma.07G260100 Glycine max HOM05D000355 ORTHO05D000227 1.6e-19 100.1 163 46.0
CARHR050400 Cardamine hirsuta HOM05D000355 ORTHO05D000227 2.8e-19 99.4 158 44.9
Ca_00638_v3 Cicer arietinum L. HOM05D000355 ORTHO05D000227 6.3e-19 98.2 94 58.5
Thhalv10023699m.g Eutrema salsugineum HOM05D000355 ORTHO05D000227 1.1e-18 97.4 156 43.6
Glyma.17G013900 Glycine max HOM05D000355 ORTHO05D000227 1.1e-18 97.4 155 47.1
TAR627G1061 Trochodendron aralioides HOM05D000355 ORTHO05D000227 1.1e-18 97.4 154 46.1
AL2G14140 Arabidopsis lyrata HOM05D000355 ORTHO05D000227 2.4e-18 96.3 157 43.3
ClCG03G004760 Citrullus lanatus HOM05D000355 ORTHO05D000227 3.1e-18 95.9 157 40.8
MELO3C002459.2 Cucumis melo HOM05D000355 ORTHO05D000227 4.1e-18 95.5 157 43.3
Ca_00639_v3 Cicer arietinum L. HOM05D000355 ORTHO05D000227 5.3e-18 95.1 94 57.4
Medtr4g132020 Medicago truncatula HOM05D000355 ORTHO05D000227 9.0e-18 94.4 155 42.6
Sp2g02630 Schrenkiella parvula HOM05D000355 ORTHO05D000227 1.2e-17 94.0 157 42.7
A06p08260 Brassica napus HOM05D000355 ORTHO05D000227 1.5e-17 93.6 163 43.6
A09p16600 Brassica napus HOM05D000355 ORTHO05D000227 3.4e-17 92.4 156 41.7
BraA06t24025Z Brassica rapa HOM05D000355 ORTHO05D000227 3.4e-17 92.4 162 42.6
Aa31LG2G8920 Aethionema arabicum HOM05D000355 ORTHO05D000227 4.5e-17 92.0 158 41.8
C05p09810 Brassica napus HOM05D000355 ORTHO05D000227 4.5e-17 92.0 162 42.6
BraA09t37296Z Brassica rapa HOM05D000355 ORTHO05D000227 4.5e-17 92.0 156 41.0
BcaC05g25039 Brassica carinata HOM05D000355 ORTHO05D000227 5.9e-17 91.7 162 42.6
Sed0005849 Sechium edule HOM05D000355 ORTHO05D000227 1.7e-16 90.1 155 38.7
BolC5t29722H Brassica oleracea HOM05D000355 ORTHO05D000227 2.2e-16 89.7 161 41.6
BcaC04g22363 Brassica carinata HOM05D000355 ORTHO05D000227 3.8e-16 89.0 156 40.4
Actinidia05519 Actinidia chinensis HOM05D000355 ORTHO05D000227 5.0e-16 88.6 152 42.1
Lj1A1229T48 Lonicera japonica HOM05D000355 ORTHO05D000227 5.0e-16 88.6 154 39.6
CsaV3_1G010800 Cucumis sativus L. HOM05D000355 ORTHO05D000227 6.5e-16 88.2 158 43.0
C09p20150 Brassica napus HOM05D000355 ORTHO05D000227 1.1e-15 87.4 156 39.7
BolC9t54921H Brassica oleracea HOM05D000355 ORTHO05D000227 1.1e-15 87.4 156 39.7
BcaB07g31295 Brassica carinata HOM05D000355 ORTHO05D000227 7.2e-15 84.7 161 37.9
unitig_37.g12152 Utricularia gibba HOM05D057828 ORTHO05D000227 9.4e-15 84.3 129 45.7
THA.LOC104818811 Tarenaya hassleriana HOM05D000355 ORTHO05D000227 4.6e-14 82.0 174 40.2
Lj4g0011714 Lotus japonicus HOM05D000355 ORTHO05D000227 1.0e-13 80.9 154 37.7
TPR.G36991 Trifolium pratense HOM05D000355 ORTHO05D000227 1.8e-13 80.1 132 43.2
ECA234G1056 Erigeron canadensis HOM05D000355 ORTHO05D000227 3.9e-13 79.0 103 48.5
AUR62021957 Chenopodium quinoa HOM05D000355 ORTHO05D000227 1.5e-12 77.0 114 44.7
AUR62044529 Chenopodium quinoa HOM05D000355 ORTHO05D000227 1.5e-12 77.0 114 44.7
Carub.0002s0313 Capsella rubella HOM05D000355 ORTHO05D000227 2.0e-12 76.6 160 39.4
unitig_748.g7584 Utricularia gibba HOM05D000355 ORTHO05D000227 2.0e-12 76.6 161 42.9
GSVIVG01012733001 Vitis vinifera HOM05D000355 ORTHO05D000227 7.4e-12 74.7 110 49.1
Thhalv10026386m.g Eutrema salsugineum HOM05D000355 ORTHO05D000227 3.7e-11 72.4 155 36.8
Oeu013639.1 Olea europaea HOM05D000355 ORTHO05D000227 3.7e-11 72.4 122 45.9
Sp7g20120 Schrenkiella parvula HOM05D000355 ORTHO05D000227 1.7e-08 63.5 150 38.0
AT4G21930 Arabidopsis thaliana HOM05D000355 ORTHO05D000227 2.2e-08 63.2 152 36.8
CDE12G0514 Ceratophyllum demersum HOM05D000355 ORTHO05D000227 3.8e-08 62.4 130 36.2
ATR0794G025 Amborella trichopoda HOM05D000355 ORTHO05D000227 6.5e-08 61.6 135 37.0
THA.LOC104813102 Tarenaya hassleriana HOM05D000355 ORTHO05D000227 1.4e-07 60.5 152 34.9
Carub.0007s1941 Capsella rubella HOM05D000355 ORTHO05D000227 3.2e-07 59.3 152 34.2
AL7G31900 Arabidopsis lyrata HOM05D000355 ORTHO05D000227 5.5e-07 58.5 148 33.8
CDE01G0314 Ceratophyllum demersum HOM05D000355 ORTHO05D000227 5.5e-07 58.5 134 35.8
CARHR228730 Cardamine hirsuta HOM05D000355 ORTHO05D000227 9.4e-07 57.8 152 31.6
GSVIVG01012731001 Vitis vinifera HOM05D000355 ORTHO05D000227 1.2e-06 57.4 52 63.5


User provided reference genes

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