Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G020700 Prunus persica HOM05D002014 ORTHO05D001958 1.3e-49 199.9 137 100.0
Prupe.4G017300 Prunus persica HOM05D002014 ORTHO05D001958 3.2e-45 185.3 99 96.0
MD10G1324900 Malus domestica HOM05D002014 ORTHO05D001958 3.7e-25 118.6 97 66.0
Prupe.4G199900 Prunus persica HOM05D002014 ORTHO05D001958 8.0e-20 100.9 61 82.0
Thecc.06G225200 Theobroma cacao HOM05D002014 ORTHO05D001958 1.6e-15 86.7 116 46.6
FAN20G2181 Fragaria x ananassa HOM05D002014 ORTHO05D001958 1.1e-13 80.5 113 45.1
arahy.Tifrunner.gnm1.ann1.DPYD9S Arachis hypogaea HOM05D002014 ORTHO05D001958 3.2e-13 79.0 98 43.9
arahy.Tifrunner.gnm1.ann1.DG0M13 Arachis hypogaea HOM05D002014 ORTHO05D001958 5.5e-13 78.2 100 43.0
Prupe.4G239000 Prunus persica HOM05D002014 ORTHO05D001958 5.5e-13 78.2 99 52.5
arahy.Tifrunner.gnm1.ann1.HIXG1Y Arachis hypogaea HOM05D002014 ORTHO05D001958 1.2e-12 77.0 103 44.7
FAN24G0143 Fragaria x ananassa HOM05D002014 ORTHO05D001958 1.6e-12 76.6 113 45.1
RcHm_v2.0_Chr4g0430691 Rosa chinensis HOM05D002014 ORTHO05D001958 1.6e-12 76.6 121 43.0
arahy.Tifrunner.gnm1.ann1.J355LQ Arachis hypogaea HOM05D002014 ORTHO05D001958 2.1e-12 76.3 99 43.4
FvH4_2g01120 Fragaria vesca HOM05D002014 ORTHO05D001958 2.1e-12 76.3 113 43.4
FvH4_7g17590 Fragaria vesca HOM05D002014 ORTHO05D001958 2.1e-12 76.3 100 47.0
FAN06G0196 Fragaria x ananassa HOM05D002014 ORTHO05D001958 2.1e-12 76.3 100 47.0
FAN06G4303 Fragaria x ananassa HOM05D002014 ORTHO05D001958 2.1e-12 76.3 100 47.0
arahy.Tifrunner.gnm1.ann1.RRTI1V Arachis hypogaea HOM05D002014 ORTHO05D001958 2.7e-12 75.9 103 43.7
Duzib235G1176 Durio zibethinus HOM05D002014 ORTHO05D001958 2.7e-12 75.9 119 42.9
RcHm_v2.0_Chr5g0002451 Rosa chinensis HOM05D002014 ORTHO05D001958 2.7e-12 75.9 121 43.0
FAN21G0073 Fragaria x ananassa HOM05D002014 ORTHO05D001958 6.1e-12 74.7 121 42.1
Prupe.4G020300 Prunus persica HOM05D002014 ORTHO05D001958 6.1e-12 74.7 104 41.3
Duzib235G0981 Durio zibethinus HOM05D002014 ORTHO05D001958 8.0e-12 74.3 119 42.9
FAN25G1699 Fragaria x ananassa HOM05D002014 ORTHO05D001958 8.0e-12 74.3 121 41.3
Glyma.15G110600 Glycine max HOM05D002014 ORTHO05D001958 8.0e-12 74.3 94 50.0
FAN25G0379 Fragaria x ananassa HOM05D002014 ORTHO05D001958 1.4e-11 73.6 104 45.2
Cfa000183 Carpinus fangiana HOM05D002014 ORTHO05D001958 3.0e-11 72.4 106 46.2
RcHm_v2.0_Chr5g0002461 Rosa chinensis HOM05D002014 ORTHO05D001958 4.0e-11 72.0 121 42.1
FvH4_3g01660 Fragaria vesca HOM05D002014 ORTHO05D001958 5.2e-11 71.6 104 44.2
FAN10G4021 Fragaria x ananassa HOM05D002014 ORTHO05D001958 1.2e-10 70.5 100 47.0
Duzib235G0547 Durio zibethinus HOM05D002014 ORTHO05D001958 1.5e-10 70.1 117 46.2
FAN03G3151 Fragaria x ananassa HOM05D002014 ORTHO05D001958 2.0e-10 69.7 100 46.0
Lsat_1_v5_gn_7_15460 Lactuca sativa HOM05D002014 ORTHO05D001958 2.0e-10 69.7 103 43.7
Prupe.4G017000 Prunus persica HOM05D002014 ORTHO05D001958 2.6e-10 69.3 118 43.2
Gorai.009G180900 Gossypium raimondii HOM05D002014 ORTHO05D001958 3.4e-10 68.9 112 41.1
Gohir.A05G172400 Gossypium hirsutum HOM05D002014 ORTHO05D001958 4.4e-10 68.6 113 44.2
MD10G1325200 Malus domestica HOM05D002014 ORTHO05D001958 5.7e-10 68.2 117 38.5
Gohir.D05G175500 Gossypium hirsutum HOM05D002014 ORTHO05D001958 1.3e-09 67.0 112 40.2
Lsat_1_v5_gn_7_15400 Lactuca sativa HOM05D002014 ORTHO05D001958 1.7e-09 66.6 98 42.9
Thecc.06G225300 Theobroma cacao HOM05D002014 ORTHO05D001958 2.2e-09 66.2 122 41.0
Dinv13928 Davidia involucrata HOM05D002014 ORTHO05D001958 2.8e-09 65.9 117 44.4
Lj6g0008980 Lotus japonicus HOM05D002014 ORTHO05D001958 2.8e-09 65.9 88 46.6
QL05p072432 Quercus lobata HOM05D002014 ORTHO05D001958 2.8e-09 65.9 107 43.0
QL12p029974 Quercus lobata HOM05D002014 ORTHO05D001958 2.8e-09 65.9 107 43.0
Rhsim13G0151700 Rhododendron simsii HOM05D002014 ORTHO05D001958 3.7e-09 65.5 105 39.0
FvH4_3g01670 Fragaria vesca HOM05D002014 ORTHO05D001958 4.8e-09 65.1 80 50.0
MD07G1060300 Malus domestica HOM05D002014 ORTHO05D001958 4.8e-09 65.1 117 37.6
COL.COLO4_31810 Corchorus olitorius HOM05D002014 ORTHO05D001958 8.3e-09 64.3 89 42.7
COL.COLO4_31812 Corchorus olitorius HOM05D002014 ORTHO05D001958 8.3e-09 64.3 117 40.2
FAN01G2575 Fragaria x ananassa HOM05D002014 ORTHO05D001958 1.1e-08 63.9 100 45.0
Lsat_1_v5_gn_7_15340 Lactuca sativa HOM05D002014 ORTHO05D001958 1.1e-08 63.9 105 40.0
MD10G1325100 Malus domestica HOM05D002014 ORTHO05D001958 1.1e-08 63.9 113 40.7
Manes.16G003600 Manihot esculenta HOM05D002014 ORTHO05D001958 1.1e-08 63.9 122 34.4
Oeu016058.1 Olea europaea HOM05D002014 ORTHO05D001958 1.1e-08 63.9 112 42.0
Potri.011G009000 Populus trichocarpa HOM05D002014 ORTHO05D001958 1.1e-08 63.9 118 39.8
Gohir.A05G172200 Gossypium hirsutum HOM05D002014 ORTHO05D001958 1.4e-08 63.5 108 38.9
Glyma.09G006200 Glycine max HOM05D002014 ORTHO05D001958 2.4e-08 62.8 94 43.6
Manes.16G003800 Manihot esculenta HOM05D002014 ORTHO05D001958 2.4e-08 62.8 120 34.2
Medtr2g024010 Medicago truncatula HOM05D002014 ORTHO05D001958 2.4e-08 62.8 97 40.2
Potri.004G007000 Populus trichocarpa HOM05D002014 ORTHO05D001958 2.4e-08 62.8 120 40.0
RcHm_v2.0_Chr5g0002441 Rosa chinensis HOM05D002014 ORTHO05D001958 2.4e-08 62.8 54 53.7
MBI10_g43120_MAGBIO Magnolia biondii HOM05D002014 ORTHO05D001958 3.1e-08 62.4 99 39.4
Potri.011G008804 Populus trichocarpa HOM05D002014 ORTHO05D001958 3.1e-08 62.4 118 38.1
Potri.011G009100 Populus trichocarpa HOM05D002014 ORTHO05D001958 3.1e-08 62.4 121 39.7
RcHm_v2.0_Chr4g0430681 Rosa chinensis HOM05D002014 ORTHO05D001958 3.1e-08 62.4 125 34.4
TPR.G13073 Trifolium pratense HOM05D002014 ORTHO05D001958 3.1e-08 62.4 95 38.9
Duzib235G0137 Durio zibethinus HOM05D002014 ORTHO05D001958 4.1e-08 62.0 117 43.6
Gorai.009G180600 Gossypium raimondii HOM05D002014 ORTHO05D001958 4.1e-08 62.0 108 38.9
Prupe.4G017100 Prunus persica HOM05D002014 ORTHO05D001958 4.1e-08 62.0 63 52.4
TAR626G0649 Trochodendron aralioides HOM05D002014 ORTHO05D001958 4.1e-08 62.0 112 42.0
Glyma.17G011100 Glycine max HOM05D002014 ORTHO05D001958 5.4e-08 61.6 94 42.6
Lj6g0005865 Lotus japonicus HOM05D002014 ORTHO05D001958 5.4e-08 61.6 85 47.1
MD10G1325000 Malus domestica HOM05D002014 ORTHO05D001958 5.4e-08 61.6 121 41.3
RcHm_v2.0_Chr5g0002511 Rosa chinensis HOM05D002014 ORTHO05D001958 5.4e-08 61.6 100 42.0
RcHm_v2.0_Chr5g0002521 Rosa chinensis HOM05D002014 ORTHO05D001958 5.4e-08 61.6 100 42.0
CANSAT56G2270 Cannabis sativa HOM05D002014 ORTHO05D001958 7.0e-08 61.2 100 42.0
HanXRQChr01g0004071 Helianthus annuus HOM05D002014 ORTHO05D001958 7.0e-08 61.2 106 37.7
QL05p072457 Quercus lobata HOM05D002014 ORTHO05D001958 7.0e-08 61.2 107 41.1
TAR624G0852 Trochodendron aralioides HOM05D002014 ORTHO05D001958 9.1e-08 60.8 120 42.5
Lj6g0003684 Lotus japonicus HOM05D002014 ORTHO05D001958 1.2e-07 60.5 85 47.1
Thecc.06G225500 Theobroma cacao HOM05D002014 ORTHO05D001958 1.2e-07 60.5 122 38.5
TPR.G13153 Trifolium pratense HOM05D002014 ORTHO05D001958 1.2e-07 60.5 95 37.9
Nn1g07225 Nelumbo nucifera HOM05D002014 ORTHO05D001958 1.6e-07 60.1 111 40.5
Medtr2g100600 Medicago truncatula HOM05D002014 ORTHO05D001958 2.0e-07 59.7 96 36.5
Nn1g07228 Nelumbo nucifera HOM05D002014 ORTHO05D001958 2.0e-07 59.7 89 41.6
Nn5g28102 Nelumbo nucifera HOM05D002014 ORTHO05D001958 2.0e-07 59.7 122 36.1
Phvul.003G081100 Phaseolus vulgaris HOM05D002014 ORTHO05D001958 2.0e-07 59.7 94 43.6
Gohir.D05G175200 Gossypium hirsutum HOM05D002014 ORTHO05D001958 2.7e-07 59.3 109 37.6
Manes.16G003700 Manihot esculenta HOM05D002014 ORTHO05D001958 2.7e-07 59.3 120 32.5
A06p09490 Brassica napus HOM05D002014 ORTHO05D001958 3.5e-07 58.9 96 38.5
C05p11210 Brassica napus HOM05D002014 ORTHO05D001958 3.5e-07 58.9 96 38.5
BolC5t29869H Brassica oleracea HOM05D002014 ORTHO05D001958 3.5e-07 58.9 96 38.5
BraA06t24139Z Brassica rapa HOM05D002014 ORTHO05D001958 3.5e-07 58.9 96 38.5
CSS0009792 Camellia sinensis var. sinensis HOM05D002014 ORTHO05D001958 3.5e-07 58.9 61 50.8
Lj6g0024439 Lotus japonicus HOM05D002014 ORTHO05D001958 3.5e-07 58.9 118 36.4
MD05G1350300 Malus domestica HOM05D002014 ORTHO05D001958 3.5e-07 58.9 58 55.2
Thecc.06G225800 Theobroma cacao HOM05D002014 ORTHO05D001958 3.5e-07 58.9 121 38.0
CiPaw.09G095900 Carya illinoinensis HOM05D002014 ORTHO05D001958 4.5e-07 58.5 123 35.0
CiPaw.09G096000 Carya illinoinensis HOM05D002014 ORTHO05D001958 4.5e-07 58.5 123 34.1
Dinv20088 Davidia involucrata HOM05D002014 ORTHO05D001958 4.5e-07 58.5 72 45.8
Potri.004G007100 Populus trichocarpa HOM05D002014 ORTHO05D001958 4.5e-07 58.5 120 40.0
Sabra11G0009000 Salix brachista HOM05D002014 ORTHO05D012114 4.5e-07 58.5 102 44.1
BcaC05g25238 Brassica carinata HOM05D002014 ORTHO05D001958 5.9e-07 58.2 96 38.5
Cpa.g.sc152.41 Carica papaya HOM05D002014 ORTHO05D001958 5.9e-07 58.2 76 42.1
ECA248G0686 Erigeron canadensis HOM05D000131 ORTHO05D000086 5.9e-07 58.2 64 50.0
Gorai.009G180500 Gossypium raimondii HOM05D002014 ORTHO05D001958 5.9e-07 58.2 109 37.6
Gorai.009G180800 Gossypium raimondii HOM05D002014 ORTHO05D001958 5.9e-07 58.2 113 40.7
HanXRQChr15g0470481 Helianthus annuus HOM05D002014 ORTHO05D001958 5.9e-07 58.2 84 46.4
Potri.011G008932 Populus trichocarpa HOM05D002014 ORTHO05D001958 5.9e-07 58.2 123 39.0
QL12p029986 Quercus lobata HOM05D002014 ORTHO05D001958 5.9e-07 58.2 111 36.0
Cpa.g.sc152.40 Carica papaya HOM05D002014 ORTHO05D001958 7.7e-07 57.8 59 47.5
CiPaw.09G095700 Carya illinoinensis HOM05D002014 ORTHO05D001958 7.7e-07 57.8 123 35.0
Ciclev10023606m.g Citrus clementina HOM05D002014 ORTHO05D001958 7.7e-07 57.8 110 36.4
Gohir.A05G172151 Gossypium hirsutum HOM05D002014 ORTHO05D001958 7.7e-07 57.8 109 36.7
Lj6C71T2 Lonicera japonica HOM05D002014 ORTHO05D001958 7.7e-07 57.8 55 52.7
Lj6C72G5 Lonicera japonica HOM05D002014 ORTHO05D001958 7.7e-07 57.8 55 52.7
Lj6C74T0 Lonicera japonica HOM05D002014 ORTHO05D001958 7.7e-07 57.8 55 52.7
TPR.G13107 Trifolium pratense HOM05D002014 ORTHO05D001958 7.7e-07 57.8 92 37.0
VMungo0540G0755 Vigna mungo HOM05D002014 ORTHO05D001958 7.7e-07 57.8 113 35.4
Aqoxy4G01492 Aquilegia oxysepala HOM05D002014 ORTHO05D001958 1.0e-06 57.4 60 48.3
HanXRQChr01g0006441 Helianthus annuus HOM05D002014 ORTHO05D001958 1.0e-06 57.4 103 39.8
Aqoxy4G01347 Aquilegia oxysepala HOM05D002014 ORTHO05D001958 1.3e-06 57.0 76 42.1
BolC8t52316H Brassica oleracea HOM05D002014 ORTHO05D001958 1.3e-06 57.0 108 37.0
BolC8t52319H Brassica oleracea HOM05D002014 ORTHO05D001958 1.3e-06 57.0 108 37.0
Hma1.2p1_0298F.1_g117580 Hydrangea macrophylla HOM05D002014 ORTHO05D001958 1.3e-06 57.0 106 42.5
Phvul.006G147300 Phaseolus vulgaris HOM05D002014 ORTHO05D001958 1.3e-06 57.0 123 35.0
Sabra11G0007100 Salix brachista HOM05D002014 ORTHO05D001958 1.3e-06 57.0 78 43.6
TWI63G0638 Tripterygium wilfordii HOM05D002014 ORTHO05D001958 1.3e-06 57.0 95 40.0
BcaB08g37439 Brassica carinata HOM05D002014 ORTHO05D001958 1.7e-06 56.6 105 36.2
Cfa000182 Carpinus fangiana HOM05D002014 ORTHO05D001958 1.7e-06 56.6 130 33.8
Haze_06833 Corylus avellana HOM05D002014 ORTHO05D001958 1.7e-06 56.6 128 33.6
Haze_06838 Corylus avellana HOM05D002014 ORTHO05D001958 1.7e-06 56.6 128 33.6
Lsat_1_v5_gn_1_129340 Lactuca sativa HOM05D002014 ORTHO05D001958 1.7e-06 56.6 108 38.0
Nn1g07227 Nelumbo nucifera HOM05D002014 ORTHO05D001958 1.7e-06 56.6 61 47.5
BcaB08g37444 Brassica carinata HOM05D002014 ORTHO05D001958 2.3e-06 56.2 105 37.1
A09p64180 Brassica napus HOM05D002014 ORTHO05D001958 2.3e-06 56.2 108 37.0
Gohir.A05G172300 Gossypium hirsutum HOM05D002014 ORTHO05D001958 2.3e-06 56.2 114 38.6
Gohir.D05G175400 Gossypium hirsutum HOM05D002014 ORTHO05D001958 2.3e-06 56.2 111 36.0
Lj6C73T1 Lonicera japonica HOM05D002014 ORTHO05D001958 2.3e-06 56.2 108 36.1
Sp1g10600 Schrenkiella parvula HOM05D002014 ORTHO05D001958 2.3e-06 56.2 106 36.8
Solyc02g080920.3 Solanum lycopersicum HOM05D002014 ORTHO05D001958 2.3e-06 56.2 126 34.1
THA.LOC104809483 Tarenaya hassleriana HOM05D002014 ORTHO05D001958 2.3e-06 56.2 115 39.1
ECA236G0221 Erigeron canadensis HOM05D002014 ORTHO05D001958 2.9e-06 55.8 87 46.0
Hma1.2p1_0298F.1_g117590 Hydrangea macrophylla HOM05D002014 ORTHO05D001958 2.9e-06 55.8 46 56.5
Lj6C9T0 Lonicera japonica HOM05D002014 ORTHO05D001958 2.9e-06 55.8 108 37.0
Psat1g178760 Pisum sativum HOM05D002014 ORTHO05D001958 2.9e-06 55.8 88 40.9
Potri.004G006900 Populus trichocarpa HOM05D002014 ORTHO05D001958 2.9e-06 55.8 61 49.2
Actinidia11865 Actinidia chinensis HOM05D000131 ORTHO05D000086 3.8e-06 55.5 54 50.0
CiPaw.09G096100 Carya illinoinensis HOM05D002014 ORTHO05D001958 3.8e-06 55.5 116 33.6
CsaV3_1G010450 Cucumis sativus L. HOM05D002014 ORTHO05D001958 3.8e-06 55.5 46 56.5
FAN25G2113 Fragaria x ananassa HOM05D002014 ORTHO05D001958 3.8e-06 55.5 114 35.1
MD05G1350400 Malus domestica HOM05D002014 ORTHO05D001958 3.8e-06 55.5 97 35.1
Potri.004G007200 Populus trichocarpa HOM05D002014 ORTHO05D001958 3.8e-06 55.5 121 35.5
A09p64210 Brassica napus HOM05D002014 ORTHO05D001958 5.0e-06 55.1 105 35.2
BraA09t41764Z Brassica rapa HOM05D002014 ORTHO05D001958 5.0e-06 55.1 105 35.2
CAN.G1014.30 Capsicum annuum HOM05D002014 ORTHO05D001958 5.0e-06 55.1 63 46.0
ClCG03G004450 Citrullus lanatus HOM05D002014 ORTHO05D001958 5.0e-06 55.1 46 54.3
Dinv20093 Davidia involucrata HOM05D002014 ORTHO05D001958 5.0e-06 55.1 70 44.3
Lj6C73T0 Lonicera japonica HOM05D002014 ORTHO05D001958 5.0e-06 55.1 75 45.3
Psat1g178720 Pisum sativum HOM05D002014 ORTHO05D001958 5.0e-06 55.1 98 35.7
Sp6g13120 Schrenkiella parvula HOM05D002014 ORTHO05D001958 5.0e-06 55.1 102 39.2
Actinidia26893 Actinidia chinensis HOM05D000131 ORTHO05D000086 6.6e-06 54.7 119 37.0
BcaB02g06440 Brassica carinata HOM05D002014 ORTHO05D001958 6.6e-06 54.7 108 37.0
Dinv20086 Davidia involucrata HOM05D002014 ORTHO05D001958 6.6e-06 54.7 111 40.5
Dinv20087 Davidia involucrata HOM05D000131 ORTHO05D000086 6.6e-06 54.7 111 40.5
Nn5g28113 Nelumbo nucifera HOM05D002014 ORTHO05D001958 6.6e-06 54.7 127 33.1
Thecc.06G225900 Theobroma cacao HOM05D002014 ORTHO05D001958 6.6e-06 54.7 87 40.2
C08p47810 Brassica napus HOM05D002014 ORTHO05D001958 8.6e-06 54.3 105 34.3
MELO3C002433.2 Cucumis melo HOM05D002014 ORTHO05D001958 8.6e-06 54.3 46 54.3
Duzib160G0758 Durio zibethinus HOM05D002014 ORTHO05D001958 8.6e-06 54.3 58 43.1
PGSC0003DMG400016438 Solanum tuberosum HOM05D002014 ORTHO05D001958 8.6e-06 54.3 45 51.1
HPP92_008837 Vanilla planifolia HOM05D002014 ORTHO05D001958 8.6e-06 54.3 97 38.1


User provided reference genes

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