Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G014700 Prunus persica HOM05D004496 ORTHO05D005513 4.7e-162 574.7 345 100.0
MD10G1327300 Malus domestica HOM05D004496 ORTHO05D005513 1.6e-109 400.2 369 67.5
MD05G1352700 Malus domestica HOM05D004496 ORTHO05D005513 3.6e-101 372.5 363 68.6
FAN25G1366 Fragaria x ananassa HOM05D004496 ORTHO05D005513 2.9e-79 299.7 351 56.1
FvH4_3g01370 Fragaria vesca HOM05D004496 ORTHO05D005513 3.9e-71 272.7 349 53.3
TAR627G0966 Trochodendron aralioides HOM05D004496 ORTHO05D005513 5.0e-71 272.3 348 58.3
TAR627G0164 Trochodendron aralioides HOM05D004496 ORTHO05D005513 8.6e-71 271.6 348 58.3
Nn1g03388 Nelumbo nucifera HOM05D004496 ORTHO05D005513 4.3e-70 269.2 361 52.6
Ciclev10015792m.g Citrus clementina HOM05D004496 ORTHO05D005513 2.8e-69 266.5 347 52.2
Dinv13941 Davidia involucrata HOM05D004496 ORTHO05D005513 1.4e-68 264.2 319 57.4
Dinv20109 Davidia involucrata HOM05D004496 ORTHO05D005950 4.0e-68 262.7 313 56.9
Sabra11G0011700 Salix brachista HOM05D004496 ORTHO05D005513 6.8e-68 261.9 351 54.7
Sabra11G0008600 Salix brachista HOM05D004496 ORTHO05D005513 4.4e-67 259.2 351 51.6
Sabra11G0010200 Salix brachista HOM05D004496 ORTHO05D005513 9.8e-67 258.1 351 51.6
TAR624G0763 Trochodendron aralioides HOM05D001218 ORTHO05D003142 1.7e-66 257.3 333 55.3
Psat1g175480 Pisum sativum HOM05D004496 ORTHO05D005513 2.9e-66 256.5 336 51.2
RcHm_v2.0_Chr5g0001991 Rosa chinensis HOM05D004496 ORTHO05D005513 4.9e-66 255.8 352 54.5
MSTRG.7183 Avicennia marina HOM05D004496 ORTHO05D005513 3.5e-64 249.6 369 46.9
CiPaw.09G098400 Carya illinoinensis HOM05D004496 ORTHO05D005513 7.8e-64 248.4 350 50.0
CiPaw.10G074800 Carya illinoinensis HOM05D004496 ORTHO05D005513 1.0e-63 248.1 345 52.5
TWI38G0680 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 1.3e-63 247.7 359 55.4
Nn1g07279 Nelumbo nucifera HOM05D004496 ORTHO05D005513 8.6e-63 245.0 384 49.5
Ca_00696_v3 Cicer arietinum L. HOM05D004496 ORTHO05D005513 2.5e-62 243.4 353 50.1
CsaV3_6G048690 Cucumis sativus L. HOM05D004496 ORTHO05D005513 7.3e-62 241.9 337 54.3
Nitab4.5_0006125g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 9.5e-62 241.5 354 48.6
MELO3C007420.2 Cucumis melo HOM05D004496 ORTHO05D005513 1.2e-61 241.1 337 56.4
Duzib192G0344 Durio zibethinus HOM05D004496 ORTHO05D005513 1.2e-61 241.1 335 51.0
Hma1.2p1_0298F.1_g117440 Hydrangea macrophylla HOM05D004496 ORTHO05D005513 6.2e-61 238.8 372 50.0
Phvul.006G145400 Phaseolus vulgaris HOM05D004496 ORTHO05D005513 6.2e-61 238.8 326 56.1
TWI38G0464 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 6.2e-61 238.8 350 50.3
Glyma.15G112200 Glycine max HOM05D004496 ORTHO05D005513 3.1e-60 236.5 317 54.6
ClCG01G021640 Citrullus lanatus HOM05D004496 ORTHO05D005513 6.8e-60 235.3 362 50.3
Gohir.A05G173300 Gossypium hirsutum HOM05D004496 ORTHO05D005513 8.9e-60 235.0 345 51.9
Lalb_Chr18g0056781 Lupinus albus HOM05D004496 ORTHO05D005513 2.0e-59 233.8 320 55.0
CANSAT56G2524 Cannabis sativa HOM05D004496 ORTHO05D005513 2.6e-59 233.4 392 46.7
Gohir.D05G176300 Gossypium hirsutum HOM05D004496 ORTHO05D005513 4.4e-59 232.6 343 49.9
Cpa.g.sc3209.1 Carica papaya HOM05D004496 ORTHO05D005513 1.3e-58 231.1 348 52.3
Glyma.09G007852 Glycine max HOM05D004496 ORTHO05D005513 1.3e-58 231.1 324 53.4
PGSC0003DMG400016725 Solanum tuberosum HOM05D004496 ORTHO05D005513 4.9e-58 229.2 359 45.4
Lj2P264T22 Lonicera japonica HOM05D004496 ORTHO05D005513 6.4e-58 228.8 349 47.6
Potri.011G015500 Populus trichocarpa HOM05D004496 ORTHO05D005513 1.1e-57 228.0 353 49.6
Duzib235G0420 Durio zibethinus HOM05D004496 ORTHO05D005513 1.4e-57 227.6 344 53.2
Medtr2g024980 Medicago truncatula HOM05D004496 ORTHO05D005513 2.4e-57 226.9 349 49.0
Rhsim13G0149900 Rhododendron simsii HOM05D004496 ORTHO05D005513 2.4e-57 226.9 347 49.3
Glyma.07G263700 Glycine max HOM05D004496 ORTHO05D005513 3.2e-57 226.5 329 51.1
Migut.M01368 Erythranthe guttata HOM05D004496 ORTHO05D005513 1.2e-56 224.6 352 45.2
MSTRG.13128 Avicennia marina HOM05D004496 ORTHO05D005513 4.6e-56 222.6 373 44.0
Solyc02g081150.1 Solanum lycopersicum HOM05D004496 ORTHO05D005513 5.1e-55 219.2 360 44.7
CAN.G1014.49 Capsicum annuum HOM05D004496 ORTHO05D005513 8.6e-55 218.4 319 48.3
Lalb_Chr15g0087811 Lupinus albus HOM05D004496 ORTHO05D005513 8.6e-55 218.4 324 49.4
Thecc.06G228600 Theobroma cacao HOM05D004496 ORTHO05D005513 8.6e-55 218.4 348 47.7
Nitab4.5_0009517g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 1.5e-54 217.6 361 47.4
BraA01t01298Z Brassica rapa HOM05D004496 ORTHO05D005513 4.3e-54 216.1 351 45.6
Sopen02g025790 Solanum pennellii HOM05D004496 ORTHO05D005513 4.3e-54 216.1 361 45.7
TWI63G1509 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 4.3e-54 216.1 356 54.2
Haze_06861 Corylus avellana HOM05D004496 ORTHO05D005513 5.6e-54 215.7 355 47.3
A01p13560 Brassica napus HOM05D004496 ORTHO05D005513 7.3e-54 215.3 351 45.6
Actinidia26886 Actinidia chinensis HOM05D004496 ORTHO05D005513 1.6e-53 214.2 325 50.5
Lj6g0013804 Lotus japonicus HOM05D004496 ORTHO05D005513 1.6e-53 214.2 328 46.6
Phvul.003G081900 Phaseolus vulgaris HOM05D004496 ORTHO05D005513 1.6e-53 214.2 332 47.3
vmacro03662 Vaccinium macrocarpon HOM05D004496 ORTHO05D005513 3.6e-53 213.0 365 46.6
Carub.0007s1912 Capsella rubella HOM05D004496 ORTHO05D005513 6.8e-52 208.8 350 47.1
THA.LOC104812981 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 8.9e-52 208.4 362 46.1
Cfa000158 Carpinus fangiana HOM05D004496 ORTHO05D005513 1.5e-51 207.6 359 46.0
Sabra04G0002100 Salix brachista HOM05D004496 ORTHO05D005513 4.4e-51 206.1 353 45.9
C07p51660 Brassica napus HOM05D004496 ORTHO05D005513 7.6e-51 205.3 346 44.2
BcaNung00807 Brassica carinata HOM05D004496 ORTHO05D005513 9.9e-51 204.9 341 46.9
Nitab4.5_0005882g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 1.3e-50 204.5 341 43.1
Potri.006G270100 Populus trichocarpa HOM05D004496 ORTHO05D005513 1.3e-50 204.5 333 47.1
Potri.004G003900 Populus trichocarpa HOM05D004496 ORTHO05D005513 2.2e-50 203.8 346 45.7
BcaC09g51153 Brassica carinata HOM05D004496 ORTHO05D005513 3.8e-50 203.0 353 44.2
C01p16430 Brassica napus HOM05D004496 ORTHO05D005513 3.8e-50 203.0 353 44.2
BolC1t01593H Brassica oleracea HOM05D004496 ORTHO05D005513 3.8e-50 203.0 353 44.2
Sed0016463 Sechium edule HOM05D004496 ORTHO05D005513 3.8e-50 203.0 286 53.5
GSVIVG01004818001 Vitis vinifera HOM05D004496 ORTHO05D005513 3.8e-50 203.0 243 53.9
DCAR_002205 Daucus carota HOM05D004496 ORTHO05D005513 6.4e-50 202.2 352 46.3
TAR626G0621 Trochodendron aralioides HOM05D004496 ORTHO05D005513 1.4e-49 201.1 343 47.8
CSS0046352 Camellia sinensis var. sinensis HOM05D004496 ORTHO05D005513 2.4e-49 200.3 336 49.4
Nitab4.5_0000005g0040 Nicotiana tabacum HOM05D004496 ORTHO05D005513 2.4e-49 200.3 341 42.5
A03p53360 Brassica napus HOM05D004496 ORTHO05D005513 3.2e-49 199.9 354 43.5
SalBow8G1688 Salvia bowleyana HOM05D004496 ORTHO05D005513 3.2e-49 199.9 343 43.7
VMungo1215G0904 Vigna mungo HOM05D004496 ORTHO05D005513 3.2e-49 199.9 329 44.4
Sed0021394 Sechium edule HOM05D004496 ORTHO05D005513 4.1e-49 199.5 344 44.8
Atru.chr10.2286 Acer truncatum HOM05D004496 ORTHO05D005513 5.4e-49 199.1 331 47.1
AL7G31460 Arabidopsis lyrata HOM05D004496 ORTHO05D005513 5.4e-49 199.1 345 48.4
CARHR229080 Cardamine hirsuta HOM05D004496 ORTHO05D005513 5.4e-49 199.1 348 47.1
Lj4g0028181 Lotus japonicus HOM05D004496 ORTHO05D005513 5.4e-49 199.1 331 53.5
AT4G22190 Arabidopsis thaliana HOM05D004496 ORTHO05D005513 9.2e-49 198.4 352 53.1
Sp7g20330 Schrenkiella parvula HOM05D004496 ORTHO05D005513 1.2e-48 198.0 359 42.9
Migut.H01591 Erythranthe guttata HOM05D004496 ORTHO05D005513 1.6e-48 197.6 367 43.1
BcaNung01704 Brassica carinata HOM05D004496 ORTHO05D005513 2.7e-48 196.8 346 43.1
THA.LOC104806318 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 2.7e-48 196.8 357 43.4
Gorai.009G181700 Gossypium raimondii HOM05D004496 ORTHO05D005513 2.3e-47 193.7 315 50.2
Thhalv10025698m.g Eutrema salsugineum HOM05D004496 ORTHO05D005513 3.0e-47 193.4 348 42.8
PGR042G2934 Punica granatum HOM05D004496 ORTHO05D005513 3.0e-47 193.4 376 42.3
Aqoxy1G03511 Aquilegia oxysepala HOM05D004496 ORTHO05D005513 5.1e-47 192.6 385 43.9
QL05p071740 Quercus lobata HOM05D004496 ORTHO05D005513 5.1e-47 192.6 358 50.6
Thhalv10028862m.g Eutrema salsugineum HOM05D004496 ORTHO05D005513 8.6e-47 191.8 326 43.6
BcaNung03756 Brassica carinata HOM05D004496 ORTHO05D005513 1.1e-46 191.4 351 43.0
Actinidia02342 Actinidia chinensis HOM05D004496 ORTHO05D005513 3.3e-46 189.9 325 45.8
Peaxi162Scf00708g00013 Petunia axillaris HOM05D004496 ORTHO05D005513 7.3e-46 188.7 327 46.8
Aa31LG6G4310 Aethionema arabicum HOM05D004496 ORTHO05D005513 2.1e-45 187.2 351 45.9
PGR004G2243 Punica granatum HOM05D004496 ORTHO05D005513 3.1e-44 183.3 341 45.7
Manes.16G002700 Manihot esculenta HOM05D004496 ORTHO05D005513 4.0e-44 183.0 354 43.5
arahy.Tifrunner.gnm1.ann1.SI7QTZ Arachis hypogaea HOM05D004496 ORTHO05D005513 5.2e-44 182.6 328 43.6
PSO210G3984 Papaver somniferum HOM05D004496 ORTHO05D005513 1.2e-43 181.4 422 42.4
Gohir.D06G157600 Gossypium hirsutum HOM05D004496 ORTHO05D005513 1.3e-42 177.9 312 44.6
CDE04G1983 Ceratophyllum demersum HOM05D004496 ORTHO05D005513 1.7e-42 177.6 331 39.9
Gorai.010G184200 Gossypium raimondii HOM05D004496 ORTHO05D005513 2.2e-42 177.2 312 44.6
Lsat_1_v5_gn_7_14880 Lactuca sativa HOM05D004496 ORTHO05D005513 2.9e-42 176.8 346 42.5
arahy.Tifrunner.gnm1.ann1.EH65IB Arachis hypogaea HOM05D004496 ORTHO05D005513 4.9e-42 176.0 330 42.4
Manes.17G027100 Manihot esculenta HOM05D004496 ORTHO05D005513 2.4e-41 173.7 303 50.2
PSO832G0430 Papaver somniferum HOM05D004496 ORTHO05D005513 1.6e-40 171.0 417 42.0
SGA_v2.0_scaffold89G27486 Striga asiatica HOM05D004496 ORTHO05D005513 1.3e-39 167.9 356 44.9
Lsat_1_v5_gn_4_61701 Lactuca sativa HOM05D004496 ORTHO05D005513 1.7e-39 167.5 354 42.4
Medtr4g132690 Medicago truncatula HOM05D004496 ORTHO05D005513 1.1e-38 164.9 331 44.7
MBI19_g19808_MAGBIO Magnolia biondii HOM05D004496 ORTHO05D005513 4.3e-38 162.9 365 40.5
THA.LOC104813445 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 9.6e-38 161.8 334 44.3
Potri.006G282500 Populus trichocarpa HOM05D004496 ORTHO05D005513 1.6e-37 161.0 358 41.9
Oeu007154.1 Olea europaea HOM05D004496 ORTHO05D005513 2.8e-37 160.2 295 43.4
Potri.006G282000 Populus trichocarpa HOM05D004496 ORTHO05D005513 1.4e-36 157.9 354 41.2
Peaxi162Scf00294g00097 Petunia axillaris HOM05D004496 ORTHO05D005513 6.9e-36 155.6 317 40.7
EL10Ac8g20132 Beta vulgaris HOM05D004496 ORTHO05D005513 1.2e-35 154.8 301 40.5
HanXRQChr15g0470781 Helianthus annuus HOM05D004496 ORTHO05D005513 5.8e-35 152.5 329 45.0
Sc17g0007590 Simmondsia chinensis HOM05D004496 ORTHO05D005513 5.8e-35 152.5 331 40.8
Ah.09g234500 Amaranthus hybridus HOM05D004496 ORTHO05D005950 1.1e-33 148.3 321 43.3
Oeu003154.1 Olea europaea HOM05D004496 ORTHO05D005513 2.1e-32 144.1 314 40.4
BcaNung03755 Brassica carinata HOM05D004496 ORTHO05D005513 3.5e-32 143.3 259 42.9
Nn1g01506 Nelumbo nucifera HOM05D004496 ORTHO05D005513 3.9e-31 139.8 154 54.5
HPP92_023384 Vanilla planifolia HOM05D004496 ORTHO05D005513 1.1e-30 138.3 334 38.3
Sp6g04650 Schrenkiella parvula HOM05D004496 ORTHO05D005513 1.9e-30 137.5 340 36.5
unitig_26.g9398 Utricularia gibba HOM05D004496 ORTHO05D005513 1.9e-30 137.5 329 39.5
ATR0059G030 Amborella trichopoda HOM05D004496 ORTHO05D005513 5.6e-30 136.0 377 36.6
Nn2g15240 Nelumbo nucifera HOM05D004496 ORTHO05D005513 4.8e-29 132.9 270 40.7
Aa31LG9G9910 Aethionema arabicum HOM05D004496 ORTHO05D005950 3.1e-28 130.2 213 42.7
Gohir.A06G151400 Gossypium hirsutum HOM05D004496 ORTHO05D005513 9.0e-28 128.6 227 46.3
ECA236G1118 Erigeron canadensis HOM05D004496 ORTHO05D005513 1.2e-27 128.3 330 37.3
CDE07G1551 Ceratophyllum demersum HOM05D004496 ORTHO05D005513 5.8e-27 125.9 287 38.0
COL.COLO4_31834 Corchorus olitorius HOM05D004496 ORTHO05D005513 6.4e-26 122.5 139 54.0
Nn3g21624 Nelumbo nucifera HOM05D004496 ORTHO05D005513 2.7e-24 117.1 284 39.4
Lj1P1236T60 Lonicera japonica HOM05D004496 ORTHO05D005513 2.3e-23 114.0 137 49.6
Potri.006G283300 Populus trichocarpa HOM05D004496 ORTHO05D005513 8.7e-23 112.1 319 35.7
Psat4g004280 Pisum sativum HOM05D004496 ORTHO05D005513 7.4e-22 109.0 255 38.4
Nn1g06547 Nelumbo nucifera HOM05D004496 ORTHO05D005513 1.8e-20 104.4 95 60.0
Ca_21060_v3 Cicer arietinum L. HOM05D004496 ORTHO05D005513 3.4e-19 100.1 244 39.3
unitig_749.g13622 Utricularia gibba HOM05D004496 ORTHO05D005513 3.8e-18 96.7 322 30.4
TPR.G37047 Trifolium pratense HOM05D004496 ORTHO05D005513 1.1e-17 95.1 214 41.1
BraA03t14400Z Brassica rapa HOM05D004496 ORTHO05D005513 7.1e-17 92.4 141 43.3
Eucgr.D01366 Eucalyptus grandis HOM05D004496 ORTHO05D005513 2.1e-16 90.9 151 41.7
SGA_v2.0_scaffold4G01894 Striga asiatica HOM05D004496 ORTHO05D005513 3.5e-16 90.1 345 36.2
Zm00001eb169380 Zea mays HOM05D004496 ORTHO05D005513 1.6e-13 81.3 363 31.7
Zm00001eb112850 Zea mays HOM05D004496 ORTHO05D005513 1.4e-12 78.2 346 31.2
Nn2g15668 Nelumbo nucifera HOM05D004496 ORTHO05D005513 6.9e-12 75.9 97 48.5
HPP92_008063 Vanilla planifolia HOM05D004496 ORTHO05D005513 3.8e-10 70.1 165 35.2
Os01g0922100 Oryza sativa ssp. japonica HOM05D004496 ORTHO05D005513 3.6e-08 63.5 153 35.9
Os11g0497350 Oryza sativa ssp. japonica HOM05D004496 ORTHO05D005513 1.0e-07 62.0 350 33.1
Oeu049699.1 Olea europaea HOM05D004496 ORTHO05D005513 3.0e-07 60.5 62 51.6
SEGI_09538 Sequoiadendron giganteum HOM05D009256 ORTHO05D004725 5.1e-07 59.7 175 32.6
Zm00001eb143140 Zea mays HOM05D004496 ORTHO05D005513 9.7e-06 55.5 157 37.6


User provided reference genes

Program Settings