Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G012200 Prunus persica HOM05D005126 ORTHO05D006169 2.1e-57 225.3 104 100.0
Prupe.4G030200 Prunus persica HOM05D005126 ORTHO05D006169 2.8e-49 198.4 101 88.1
QL05p077365 Quercus lobata HOM05D005126 ORTHO05D006169 2.9e-46 188.3 102 85.3
MD10G1310700 Malus domestica HOM05D005126 ORTHO05D006169 2.4e-45 185.3 100 82.0
RcHm_v2.0_Chr5g0004701 Rosa chinensis HOM05D005126 ORTHO05D006169 3.2e-45 184.9 101 81.2
FAN21G2838 Fragaria x ananassa HOM05D005126 ORTHO05D006169 4.2e-45 184.5 101 81.2
MD05G1335200 Malus domestica HOM05D005126 ORTHO05D006169 5.4e-45 184.1 100 82.0
Sc05g0008390 Simmondsia chinensis HOM05D005126 ORTHO05D006169 1.6e-44 182.6 104 79.8
FAN25G1045 Fragaria x ananassa HOM05D005126 ORTHO05D006169 2.7e-44 181.8 98 80.6
Dinv17855 Davidia involucrata HOM05D005126 ORTHO05D006169 3.5e-44 181.4 102 81.4
THA.LOC104809525 Tarenaya hassleriana HOM05D005126 ORTHO05D006169 7.9e-44 180.3 96 85.4
Ciclev10007263m.g Citrus clementina HOM05D005126 ORTHO05D006169 1.0e-43 179.9 103 79.6
Cc02_g11860 Coffea canephora HOM05D005126 ORTHO05D006169 1.7e-43 179.1 95 86.3
MELO3C007347.2 Cucumis melo HOM05D005126 ORTHO05D006169 1.7e-43 179.1 97 82.5
CsaV3_6G049470 Cucumis sativus L. HOM05D005126 ORTHO05D006169 1.7e-43 179.1 97 82.5
DCAR_004173 Daucus carota HOM05D005126 ORTHO05D006169 1.7e-43 179.1 102 80.4
Actinidia05547 Actinidia chinensis HOM05D005126 ORTHO05D006169 2.3e-43 178.7 102 79.4
Cfa000280 Carpinus fangiana HOM05D005126 ORTHO05D006169 2.3e-43 178.7 102 79.4
PGR031G2928 Punica granatum HOM05D005126 ORTHO05D006169 2.3e-43 178.7 96 83.3
Hund23540 Selenicereus undatus HOM05D005126 ORTHO05D006169 2.3e-43 178.7 104 76.9
Eucgr.H00119 Eucalyptus grandis HOM05D005126 ORTHO05D006169 3.9e-43 177.9 102 78.4
Thhalv10023224m.g Eutrema salsugineum HOM05D005126 ORTHO05D006169 3.9e-43 177.9 96 84.4
Manes.15G164500 Manihot esculenta HOM05D005126 ORTHO05D006169 3.9e-43 177.9 103 78.6
Thecc.06G207200 Theobroma cacao HOM05D005126 ORTHO05D006169 3.9e-43 177.9 97 83.5
TAR624G1039 Trochodendron aralioides HOM05D005126 ORTHO05D006169 3.9e-43 177.9 101 79.2
ClCG01G022310 Citrullus lanatus HOM05D005126 ORTHO05D006169 5.1e-43 177.6 95 84.2
CANSAT35G0768 Cannabis sativa HOM05D005126 ORTHO05D006169 6.6e-43 177.2 103 76.7
Gohir.A06G208600 Gossypium hirsutum HOM05D005126 ORTHO05D006169 6.6e-43 177.2 96 84.4
Gohir.D06G212500 Gossypium hirsutum HOM05D005126 ORTHO05D006169 6.6e-43 177.2 96 84.4
Gorai.010G253600 Gossypium raimondii HOM05D005126 ORTHO05D006169 6.6e-43 177.2 96 84.4
CAN.G424.91 Capsicum annuum HOM05D005126 ORTHO05D006169 8.7e-43 176.8 102 77.5
AUR62006818 Chenopodium quinoa HOM05D005126 ORTHO05D006169 1.1e-42 176.4 104 76.0
Haze_06662 Corylus avellana HOM05D005126 ORTHO05D006169 1.1e-42 176.4 95 84.2
Lj2C276T6 Lonicera japonica HOM05D005126 ORTHO05D006169 1.5e-42 176.0 103 78.6
Oeu045309.1 Olea europaea HOM05D005126 ORTHO05D006169 1.5e-42 176.0 102 79.4
PGSC0003DMG400021720 Solanum tuberosum HOM05D005126 ORTHO05D006169 1.9e-42 175.6 103 76.7
CiPaw.09G152800 Carya illinoinensis HOM05D005126 ORTHO05D006169 2.5e-42 175.3 102 79.4
TWI63G0986 Tripterygium wilfordii HOM05D005126 ORTHO05D006169 2.5e-42 175.3 102 78.4
EL10Ac4g09560 Beta vulgaris HOM05D005126 ORTHO05D006169 3.3e-42 174.9 104 76.9
Sopen02g024620 Solanum pennellii HOM05D005126 ORTHO05D006169 3.3e-42 174.9 103 76.7
Sed0023382 Sechium edule HOM05D005126 ORTHO05D006169 4.3e-42 174.5 96 81.2
CSS0033857 Camellia sinensis var. sinensis HOM05D005126 ORTHO05D006169 5.6e-42 174.1 102 78.4
FvH4_3g03041 Fragaria vesca HOM05D005126 ORTHO05D006169 5.6e-42 174.1 117 70.1
Nitab4.5_0006456g0050 Nicotiana tabacum HOM05D005126 ORTHO05D006169 7.3e-42 173.7 103 75.7
SGA_v2.0_scaffold216G42402 Striga asiatica HOM05D005126 ORTHO05D006169 1.3e-41 172.9 95 82.1
Nn1g03751 Nelumbo nucifera HOM05D005126 ORTHO05D006169 1.6e-41 172.6 102 77.5
Potri.011G032200 Populus trichocarpa HOM05D005126 ORTHO05D006169 1.6e-41 172.6 102 76.5
MSTRG.4220 Avicennia marina HOM05D005126 ORTHO05D006169 2.1e-41 172.2 102 77.5
Nitab4.5_0000503g0120 Nicotiana tabacum HOM05D005126 ORTHO05D006169 2.1e-41 172.2 97 79.4
Sp2g02860 Schrenkiella parvula HOM05D005126 ORTHO05D006169 2.1e-41 172.2 96 82.3
vmacro03741 Vaccinium macrocarpon HOM05D005126 ORTHO05D006169 2.1e-41 172.2 95 82.1
Aqoxy4G01910 Aquilegia oxysepala HOM05D005126 ORTHO05D006169 3.6e-41 171.4 95 81.1
BraA01t03188Z Brassica rapa HOM05D005126 ORTHO05D006169 3.6e-41 171.4 96 80.2
Carub.0002s0337 Capsella rubella HOM05D005126 ORTHO05D006169 3.6e-41 171.4 95 83.2
CARHR050640 Cardamine hirsuta HOM05D005126 ORTHO05D006169 3.6e-41 171.4 95 83.2
MBI07_g11719_MAGBIO Magnolia biondii HOM05D005126 ORTHO05D006169 6.2e-41 170.6 95 80.0
arahy.Tifrunner.gnm1.ann1.JX13SW Arachis hypogaea HOM05D005126 ORTHO05D006169 8.1e-41 170.2 101 78.2
Glyma.08G061700 Glycine max HOM05D005126 ORTHO05D006169 8.1e-41 170.2 96 81.2
Glyma.07G187500 Glycine max HOM05D005126 ORTHO05D006169 1.1e-40 169.9 96 81.2
AT1G61690 Arabidopsis thaliana HOM05D005126 ORTHO05D006169 1.4e-40 169.5 95 80.0
Hma1.2p1_0809F.1_g221780 Hydrangea macrophylla HOM05D005126 ORTHO05D006169 1.4e-40 169.5 95 81.1
PSO210G4646 Papaver somniferum HOM05D005126 ORTHO05D006169 1.4e-40 169.5 93 81.7
Sabra11G0025300 Salix brachista HOM05D005126 ORTHO05D006169 3.1e-40 168.3 102 74.5
AL2G14430 Arabidopsis lyrata HOM05D005126 ORTHO05D006169 4.0e-40 167.9 94 81.9
BcaB04g20363 Brassica carinata HOM05D005126 ORTHO05D006169 4.0e-40 167.9 95 80.0
VMungo0251G0970 Vigna mungo HOM05D005126 ORTHO05D006169 4.0e-40 167.9 96 80.2
C01p38950 Brassica napus HOM05D005126 ORTHO05D006169 5.3e-40 167.5 94 80.9
BolC1t03845H Brassica oleracea HOM05D005126 ORTHO05D006169 5.3e-40 167.5 94 80.9
Lalb_Chr09g0327171 Lupinus albus HOM05D005126 ORTHO05D006169 5.3e-40 167.5 96 79.2
A01p30560 Brassica napus HOM05D005126 ORTHO05D006169 6.9e-40 167.2 94 79.8
Lsat_1_v5_gn_7_18540 Lactuca sativa HOM05D005126 ORTHO05D006169 6.9e-40 167.2 101 73.3
Phvul.002G219000 Phaseolus vulgaris HOM05D005126 ORTHO05D006169 1.5e-39 166.0 96 79.2
HanXRQChr05g0130831 Helianthus annuus HOM05D005126 ORTHO05D006169 2.0e-39 165.6 95 76.8
Migut.N00381 Erythranthe guttata HOM05D005126 ORTHO05D006169 2.6e-39 165.2 93 77.4
Lj4g0001880 Lotus japonicus HOM05D005126 ORTHO05D006169 5.8e-39 164.1 94 80.9
ATR0804G089 Amborella trichopoda HOM05D005126 ORTHO05D006169 7.6e-39 163.7 95 76.8
Ca_18455_v3 Cicer arietinum L. HOM05D005126 ORTHO05D006169 7.6e-39 163.7 96 78.1
Psat7g105840 Pisum sativum HOM05D005126 ORTHO05D006169 7.6e-39 163.7 96 79.2
Aa31LG2G9130 Aethionema arabicum HOM05D005126 ORTHO05D006169 2.2e-38 162.2 95 75.8
ECA236G2220 Erigeron canadensis HOM05D005126 ORTHO05D006169 6.4e-38 160.6 95 74.7
PSO832G1831 Papaver somniferum HOM05D005126 ORTHO05D006169 8.4e-38 160.2 93 78.5
Potri.004G030500 Populus trichocarpa HOM05D005126 ORTHO05D006169 8.4e-38 160.2 96 76.0
Medtr4g092040 Medicago truncatula HOM05D005126 ORTHO05D006169 1.9e-37 159.1 96 77.1
CDE01G0539 Ceratophyllum demersum HOM05D005126 ORTHO05D006169 3.2e-37 158.3 96 70.8
SEGI_24274 Sequoiadendron giganteum HOM05D005126 ORTHO05D006169 3.2e-37 158.3 95 74.7
Prupe.4G011500 Prunus persica HOM05D005126 ORTHO05D006169 1.6e-36 156.0 114 69.3
Os03g0669800 Oryza sativa ssp. japonica HOM05D005126 ORTHO05D006169 5.1e-35 151.0 94 70.2
Gohir.A10G017400 Gossypium hirsutum HOM05D005126 ORTHO05D006169 9.6e-34 146.7 97 69.1
Gohir.D10G017600 Gossypium hirsutum HOM05D005126 ORTHO05D006169 9.6e-34 146.7 97 70.1
Gorai.011G019500 Gossypium raimondii HOM05D005126 ORTHO05D006169 9.6e-34 146.7 97 70.1
Ah.06g190720 Amaranthus hybridus HOM05D005126 ORTHO05D006169 1.3e-33 146.4 104 65.4
CSS0026607 Camellia sinensis var. sinensis HOM05D005126 ORTHO05D006169 1.6e-33 146.0 102 67.6
SMO141G0003 Selaginella moellendorffii HOM05D005126 ORTHO05D006169 3.7e-33 144.8 83 74.7
GSVIVG01006404001 Vitis vinifera HOM05D005126 ORTHO05D006169 1.2e-31 139.8 104 63.5
Mapoly0032s0118 Marchantia polymorpha HOM05D005126 ORTHO05D006169 4.5e-31 137.9 83 71.1
AagrBONN_evm.TU.Sc2ySwM_368.2701 Anthoceros agrestis HOM05D005126 ORTHO05D006169 1.3e-30 136.3 95 63.2
AUR62000477 Chenopodium quinoa HOM05D005126 ORTHO05D006169 1.4e-29 132.9 104 61.5
Pp3c16_8350 Physcomitrium patens HOM05D005126 ORTHO05D006169 3.0e-27 125.2 100 53.0
COL.COLO4_33008 Corchorus olitorius HOM05D005126 ORTHO05D006169 3.9e-27 124.8 102 62.7
SalBow4G2671 Salvia bowleyana HOM05D005126 ORTHO05D006169 1.1e-26 123.2 65 83.1
TAR626G0500 Trochodendron aralioides HOM05D005126 ORTHO05D006169 1.4e-21 106.3 64 73.4
Oeu022112.1 Olea europaea HOM05D005126 ORTHO05D006169 1.6e-20 102.8 60 75.0
Oeu015946.3 Olea europaea HOM05D005126 ORTHO05D006169 3.0e-19 98.6 57 75.4
unitig_736.g22481 Utricularia gibba HOM05D005126 ORTHO05D006169 3.0e-19 98.6 51 82.4
Duzib160G0882 Durio zibethinus HOM05D005126 ORTHO05D006169 3.2e-13 78.6 48 70.8
arahy.Tifrunner.gnm1.ann1.7M140W Arachis hypogaea HOM05D005126 ORTHO05D006169 7.2e-13 77.4 38 89.5
Ah.10g026840 Amaranthus hybridus HOM05D005126 ORTHO05D006169 1.4e-11 73.2 38 84.2
Rhsim13G0163000 Rhododendron simsii HOM05D005126 ORTHO05D006169 1.8e-11 72.8 38 81.6
TPR.G13921 Trifolium pratense HOM05D005126 ORTHO05D006169 4.8e-09 64.7 44 70.5
HanXRQChr14g0429841 Helianthus annuus HOM05D003211 ORTHO05D003621 2.6e-07 58.9 66 39.4
Lsat_1_v5_gn_2_9160 Lactuca sativa HOM05D003211 ORTHO05D003621 2.6e-07 58.9 93 34.4
ECA238G1606 Erigeron canadensis HOM05D003211 ORTHO05D003621 5.9e-07 57.8 59 40.7
Migut.H02184 Erythranthe guttata HOM05D003211 ORTHO05D003621 5.9e-07 57.8 59 42.4
HanXRQChr06g0183801 Helianthus annuus HOM05D003211 ORTHO05D003621 5.9e-07 57.8 59 42.4
Nitab4.5_0009349g0010 Nicotiana tabacum HOM05D003211 ORTHO05D003621 5.9e-07 57.8 59 42.4
Nitab4.5_0000188g0210 Nicotiana tabacum HOM05D003211 ORTHO05D003621 7.7e-07 57.4 59 42.4
Cc07_g11110 Coffea canephora HOM05D003211 ORTHO05D003621 1.0e-06 57.0 79 38.0
Lalb_Chr03g0033451 Lupinus albus HOM05D003211 ORTHO05D003621 1.3e-06 56.6 59 42.4
CDE12G0914 Ceratophyllum demersum HOM05D005126 ORTHO05D006169 1.7e-06 56.2 40 57.5
Ah.11g040010 Amaranthus hybridus HOM05D003211 ORTHO05D003621 2.2e-06 55.8 59 42.4
Os06g0724100 Oryza sativa ssp. japonica HOM05D003211 ORTHO05D003621 2.2e-06 55.8 59 40.7
Solyc02g062000.4 Solanum lycopersicum HOM05D003211 ORTHO05D003621 2.2e-06 55.8 59 40.7
Sopen02g012960 Solanum pennellii HOM05D003211 ORTHO05D003621 2.2e-06 55.8 59 40.7
PGSC0003DMG400023883 Solanum tuberosum HOM05D003211 ORTHO05D003621 2.2e-06 55.8 59 40.7
arahy.Tifrunner.gnm1.ann1.PQ7T65 Arachis hypogaea HOM05D003211 ORTHO05D003621 3.8e-06 55.1 59 40.7
arahy.Tifrunner.gnm1.ann1.R2EEBA Arachis hypogaea HOM05D003211 ORTHO05D003621 3.8e-06 55.1 59 40.7
CSS0036463 Camellia sinensis var. sinensis HOM05D003211 ORTHO05D003621 3.8e-06 55.1 59 42.4
CSS0039753 Camellia sinensis var. sinensis HOM05D003211 ORTHO05D003621 3.8e-06 55.1 59 42.4
Hund01677 Selenicereus undatus HOM05D003211 ORTHO05D003621 3.8e-06 55.1 59 40.7
Zm00001eb228270 Zea mays HOM05D003211 ORTHO05D003621 3.8e-06 55.1 59 40.7
A08p29490 Brassica napus HOM05D003211 ORTHO05D003621 6.5e-06 54.3 59 40.7
BraA08t34886Z Brassica rapa HOM05D003211 ORTHO05D003621 6.5e-06 54.3 59 40.7
ClCG03G011230 Citrullus lanatus HOM05D000903 ORTHO05D000731 8.5e-06 53.9 49 46.9
MD08G1009900 Malus domestica HOM05D003211 ORTHO05D003621 8.5e-06 53.9 59 39.0
THA.LOC104809587 Tarenaya hassleriana HOM05D003211 ORTHO05D003621 8.5e-06 53.9 60 41.7
unitig_26.g9886 Utricularia gibba HOM05D003211 ORTHO05D003621 8.5e-06 53.9 67 38.8


User provided reference genes

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