Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G011100 Prunus persica HOM05D005487 ORTHO05D007280 3.9e-273 944.1 454 100.0
MD10G1331100 Malus domestica HOM05D005487 ORTHO05D007280 6.8e-233 810.4 417 91.4
FvH4_3g01030 Fragaria vesca HOM05D005487 ORTHO05D007280 2.7e-229 798.5 419 88.8
RcHm_v2.0_Chr5g0001571 Rosa chinensis HOM05D005487 ORTHO05D007280 4.2e-227 791.2 417 88.7
FAN21G2054 Fragaria x ananassa HOM05D005487 ORTHO05D007280 4.7e-226 787.7 419 88.1
Atru.chr1.2460 Acer truncatum HOM05D005487 ORTHO05D007280 5.7e-224 780.8 419 87.8
QL05p069756 Quercus lobata HOM05D005487 ORTHO05D007280 1.1e-222 776.5 420 86.4
CiPaw.10G077700 Carya illinoinensis HOM05D005487 ORTHO05D007280 1.6e-221 772.7 421 85.0
Cfa000109 Carpinus fangiana HOM05D005487 ORTHO05D007280 8.6e-220 766.9 421 84.8
Manes.09G070300 Manihot esculenta HOM05D005487 ORTHO05D007280 9.5e-219 763.5 420 85.7
Duzib192G1033 Durio zibethinus HOM05D005487 ORTHO05D007280 1.4e-217 759.6 417 85.4
PGR004G0814 Punica granatum HOM05D005487 ORTHO05D007280 4.0e-217 758.1 419 83.5
Actinidia26862 Actinidia chinensis HOM05D005487 ORTHO05D007280 5.2e-217 757.7 418 82.8
Thecc.06G232800 Theobroma cacao HOM05D005487 ORTHO05D007280 5.2e-217 757.7 418 84.4
CSS0007892 Camellia sinensis var. sinensis HOM05D005487 ORTHO05D007280 6.8e-217 757.3 419 84.0
Actinidia11881 Actinidia chinensis HOM05D005487 ORTHO05D007280 1.3e-215 753.1 418 83.5
Sed0025030 Sechium edule HOM05D005487 ORTHO05D007280 3.7e-215 751.5 419 82.3
FAN25G0861 Fragaria x ananassa HOM05D005487 ORTHO05D007280 8.3e-215 750.4 397 88.7
Nn1g07355 Nelumbo nucifera HOM05D005487 ORTHO05D007280 8.3e-215 750.4 419 82.6
TAR724G0004 Trochodendron aralioides HOM05D005487 ORTHO05D007280 1.4e-214 749.6 419 82.8
TAR629G3393 Trochodendron aralioides HOM05D005487 ORTHO05D007280 1.8e-214 749.2 419 82.1
Potri.006G009200 Populus trichocarpa HOM05D005487 ORTHO05D007280 4.1e-214 748.0 419 83.1
Rhsim13G0146300 Rhododendron simsii HOM05D005487 ORTHO05D007280 5.4e-214 747.7 446 79.4
RhsimUnG0109400 Rhododendron simsii HOM05D005487 ORTHO05D007280 5.4e-214 747.7 446 79.4
Ciclev10015367m.g Citrus clementina HOM05D005487 ORTHO05D007280 1.2e-213 746.5 421 82.4
Lj2C262G3 Lonicera japonica HOM05D005487 ORTHO05D007280 3.0e-212 741.9 413 83.3
Nn1g03329 Nelumbo nucifera HOM05D005487 ORTHO05D007280 3.0e-212 741.9 418 82.3
Cpa.g.sc75.119 Carica papaya HOM05D005487 ORTHO05D007280 5.0e-212 741.1 417 83.5
TWI38G0871 Tripterygium wilfordii HOM05D005487 ORTHO05D007280 5.0e-212 741.1 419 82.6
Eucgr.L00543 Eucalyptus grandis HOM05D005487 ORTHO05D007280 6.6e-212 740.7 452 78.1
CANSAT56G2574 Cannabis sativa HOM05D005487 ORTHO05D007280 2.5e-211 738.8 421 81.5
Oeu044422.1 Olea europaea HOM05D005487 ORTHO05D007280 5.6e-211 737.6 419 80.9
Nitab4.5_0000143g0260 Nicotiana tabacum HOM05D005487 ORTHO05D007280 9.5e-211 736.9 421 81.5
HanXRQChr10g0284101 Helianthus annuus HOM05D005487 ORTHO05D007280 1.2e-210 736.5 423 81.6
Hma1.2p1_0135F.1_g061730 Hydrangea macrophylla HOM05D005487 ORTHO05D007280 2.1e-210 735.7 419 81.4
Gohir.A06G205600 Gossypium hirsutum HOM05D005487 ORTHO05D007280 4.0e-209 731.5 417 82.3
Gohir.A05G174500 Gossypium hirsutum HOM05D005487 ORTHO05D007280 1.2e-208 729.9 417 82.7
arahy.Tifrunner.gnm1.ann1.8PBE23 Arachis hypogaea HOM05D005487 ORTHO05D007280 1.5e-208 729.6 421 79.8
COL.COLO4_31878 Corchorus olitorius HOM05D005487 ORTHO05D007280 2.6e-208 728.8 415 82.4
arahy.Tifrunner.gnm1.ann1.61KG5W Arachis hypogaea HOM05D005487 ORTHO05D007280 3.4e-208 728.4 421 79.8
Gorai.010G250300 Gossypium raimondii HOM05D005487 ORTHO05D007280 4.4e-208 728.0 417 81.5
Nitab4.5_0001198g0060 Nicotiana tabacum HOM05D005487 ORTHO05D007280 5.8e-208 727.6 419 80.4
Gorai.009G182900 Gossypium raimondii HOM05D005487 ORTHO05D007280 9.8e-208 726.9 417 82.5
Gohir.D05G177500 Gossypium hirsutum HOM05D005487 ORTHO05D007280 2.2e-207 725.7 417 82.3
Gohir.D06G215900 Gossypium hirsutum HOM05D005487 ORTHO05D007280 2.2e-207 725.7 417 81.3
PSO210G3736 Papaver somniferum HOM05D005487 ORTHO05D007280 2.2e-207 725.7 417 80.1
PSO764G0115 Papaver somniferum HOM05D005487 ORTHO05D007280 2.9e-207 725.3 418 79.9
Ca_00719_v3 Cicer arietinum L. HOM05D005487 ORTHO05D007280 6.4e-207 724.2 419 80.2
BolC5t29858H Brassica oleracea HOM05D005487 ORTHO05D007280 8.3e-207 723.8 456 76.1
EL10Ac8g20177 Beta vulgaris HOM05D005487 ORTHO05D007280 1.1e-206 723.4 419 79.2
MBI19_g29429_MAGBIO Magnolia biondii HOM05D005487 ORTHO05D007280 1.1e-206 723.4 418 79.7
Sp1g10720 Schrenkiella parvula HOM05D005487 ORTHO05D007280 1.4e-206 723.0 419 79.5
GSVIVG01003351001 Vitis vinifera HOM05D005487 ORTHO05D007280 1.9e-206 722.6 421 80.0
Psat1g176520 Pisum sativum HOM05D005487 ORTHO05D007280 2.4e-206 722.2 419 79.7
CAN.G1186.29 Capsicum annuum HOM05D005487 ORTHO05D007280 3.2e-206 721.8 420 80.2
BcaB02g06431 Brassica carinata HOM05D005487 ORTHO05D007280 4.1e-206 721.5 420 79.0
ClCG01G021500 Citrullus lanatus HOM05D005487 ORTHO05D007280 4.1e-206 721.5 422 79.9
Lsat_1_v5_gn_8_64401 Lactuca sativa HOM05D005487 ORTHO05D007280 7.0e-206 720.7 437 79.2
TPR.G13057 Trifolium pratense HOM05D005487 ORTHO05D007280 2.0e-205 719.2 419 79.5
CsaV3_6G048520 Cucumis sativus L. HOM05D005487 ORTHO05D007280 2.7e-205 718.8 419 80.2
Sopen11g006950 Solanum pennellii HOM05D005487 ORTHO05D007280 3.5e-205 718.4 419 79.0
MELO3C007433.2 Cucumis melo HOM05D005487 ORTHO05D007280 4.6e-205 718.0 420 80.0
Solyc11g012160.2 Solanum lycopersicum HOM05D005487 ORTHO05D007280 4.6e-205 718.0 419 78.8
AL1G23300 Arabidopsis lyrata HOM05D005487 ORTHO05D007280 6.0e-205 717.6 419 79.0
Thhalv10007724m.g Eutrema salsugineum HOM05D005487 ORTHO05D007280 6.0e-205 717.6 419 79.2
THA.LOC104809472 Tarenaya hassleriana HOM05D005487 ORTHO05D007280 7.8e-205 717.2 419 80.4
AT1G12050 Arabidopsis thaliana HOM05D005487 ORTHO05D007280 3.0e-204 715.3 419 79.2
MSTRG.16025 Avicennia marina HOM05D005487 ORTHO05D007280 3.0e-204 715.3 421 78.9
Medtr2g025640 Medicago truncatula HOM05D005487 ORTHO05D007280 3.9e-204 714.9 419 78.5
Cc09_g00910 Coffea canephora HOM05D005487 ORTHO05D007280 6.6e-204 714.1 418 78.2
VMungo0540G1792 Vigna mungo HOM05D005487 ORTHO05D007280 1.1e-203 713.4 419 79.0
AUR62021869 Chenopodium quinoa HOM05D005487 ORTHO05D007280 2.5e-203 712.2 419 79.5
Aa31LG1G2680 Aethionema arabicum HOM05D005487 ORTHO05D007280 3.3e-203 711.8 419 78.0
Carub.0001s1173 Capsella rubella HOM05D005487 ORTHO05D007280 3.3e-203 711.8 419 78.0
vmacro03645 Vaccinium macrocarpon HOM05D005487 ORTHO05D007280 4.3e-203 711.4 404 83.7
Lj6g0015557 Lotus japonicus HOM05D005487 ORTHO05D007280 5.6e-203 711.1 419 78.8
Lalb_Chr15g0087971 Lupinus albus HOM05D005487 ORTHO05D007280 5.6e-203 711.1 421 78.6
CARHR012410 Cardamine hirsuta HOM05D005487 ORTHO05D007280 2.1e-202 709.1 419 78.0
Phvul.006G143500 Phaseolus vulgaris HOM05D005487 ORTHO05D007280 2.8e-202 708.8 419 78.0
Dinv07399 Davidia involucrata HOM05D005487 ORTHO05D007280 6.2e-202 707.6 400 82.0
SalBow8G2024 Salvia bowleyana HOM05D005487 ORTHO05D007280 8.1e-202 707.2 421 78.6
Peaxi162Scf00558g00518 Petunia axillaris HOM05D005487 ORTHO05D007280 1.4e-201 706.4 459 73.6
Glyma.15G114300 Glycine max HOM05D005487 ORTHO05D007280 3.1e-201 705.3 419 77.1
Glyma.09G010000 Glycine max HOM05D005487 ORTHO05D007280 2.9e-199 698.7 419 76.8
Aqoxy1G04106 Aquilegia oxysepala HOM05D005487 ORTHO05D007280 2.7e-197 692.2 422 75.6
C05p11110 Brassica napus HOM05D005487 ORTHO05D007280 3.5e-197 691.8 408 79.4
BcaC05g25225 Brassica carinata HOM05D005487 ORTHO05D007280 4.6e-197 691.4 402 79.9
PGSC0003DMG400013273 Solanum tuberosum HOM05D005487 ORTHO05D007280 4.6e-197 691.4 504 66.7
ATR1101G021 Amborella trichopoda HOM05D005487 ORTHO05D007280 7.8e-197 690.6 419 77.3
A06p09440 Brassica napus HOM05D005487 ORTHO05D007280 3.9e-196 688.3 401 79.8
BraA06t24129Z Brassica rapa HOM05D005487 ORTHO05D007280 2.5e-195 685.6 401 79.3
Haze_06922 Corylus avellana HOM05D005487 ORTHO05D007280 6.2e-194 681.0 435 75.9
Sopen04g006840 Solanum pennellii HOM05D005487 ORTHO05D007280 3.1e-193 678.7 419 75.4
Hund23409 Selenicereus undatus HOM05D005487 ORTHO05D007280 8.9e-193 677.2 395 79.0
CAN.G1263.14 Capsicum annuum HOM05D005487 ORTHO05D007280 2.0e-192 676.0 420 74.5
Haze_06917 Corylus avellana HOM05D005487 ORTHO05D007280 2.6e-192 675.6 459 71.9
PGSC0003DMG400023608 Solanum tuberosum HOM05D005487 ORTHO05D007280 3.4e-192 675.2 419 74.9
Peaxi162Scf00442g00414 Petunia axillaris HOM05D005487 ORTHO05D007280 1.3e-191 673.3 456 69.3
SGA_v2.0_scaffold7G03757 Striga asiatica HOM05D005487 ORTHO05D007280 4.9e-191 671.4 431 73.8
HPP92_027542 Vanilla planifolia HOM05D005487 ORTHO05D007280 1.6e-189 666.4 426 71.8
HPP92_003014 Vanilla planifolia HOM05D005487 ORTHO05D007280 6.0e-189 664.5 425 72.0
Solyc04g014730.4 Solanum lycopersicum HOM05D005487 ORTHO05D007280 1.7e-188 662.9 412 74.5
CDE07G0927 Ceratophyllum demersum HOM05D005487 ORTHO05D007280 3.1e-185 652.1 428 72.4
DCAR_027826 Daucus carota HOM05D005487 ORTHO05D007280 2.6e-184 649.0 421 73.4
Os02g0196800 Oryza sativa ssp. japonica HOM05D005487 ORTHO05D007280 2.2e-183 646.0 427 68.4
Zm00001eb236160 Zea mays HOM05D005487 ORTHO05D007280 2.2e-183 646.0 422 70.4
unitig_0.g999 Utricularia gibba HOM05D005487 ORTHO05D007280 3.2e-182 642.1 405 73.6
Sabra06G0007000 Salix brachista HOM05D005487 ORTHO05D007280 5.4e-182 641.3 418 74.9
AUR62012785 Chenopodium quinoa HOM05D005487 ORTHO05D007280 6.4e-175 617.8 401 74.1
Duzib235G0086 Durio zibethinus HOM05D005487 ORTHO05D007280 3.5e-165 585.5 370 75.9
SMO137G0224 Selaginella moellendorffii HOM05D005487 ORTHO05D007280 1.1e-163 580.5 423 66.2
Pp3c4_7990 Physcomitrium patens HOM05D005487 ORTHO05D007280 2.5e-163 579.3 421 64.6
Migut.M01391 Erythranthe guttata HOM05D005487 ORTHO05D007280 3.4e-160 568.9 419 67.3
Mapoly0022s0035 Marchantia polymorpha HOM05D005487 ORTHO05D007280 1.3e-159 567.0 422 62.3
Sc17g0007720 Simmondsia chinensis HOM05D005487 ORTHO05D007280 1.1e-158 563.9 300 85.7
CSS0007230 Camellia sinensis var. sinensis HOM05D005487 ORTHO05D007280 2.5e-158 562.8 438 66.0
Ah.09g234260 Amaranthus hybridus HOM05D005487 ORTHO05D007280 8.7e-156 554.3 419 65.9
Zm00001eb205930 Zea mays HOM05D005487 ORTHO05D007280 1.5e-155 553.5 364 69.2
AagrBONN_evm.TU.Sc2ySwM_344.3343 Anthoceros agrestis HOM05D005487 ORTHO05D007280 5.7e-155 551.6 422 61.8
Pp3c13_16620 Physcomitrium patens HOM05D005487 ORTHO05D007280 8.2e-146 521.2 358 67.6
RcHm_v2.0_Chr3g0477951 Rosa chinensis HOM05D005487 ORTHO05D007280 1.2e-141 507.3 476 58.8
RcHm_v2.0_Chr3g0484131 Rosa chinensis HOM05D005487 ORTHO05D007280 5.3e-137 491.9 470 58.5
Haze_26411 Corylus avellana HOM05D005487 ORTHO05D007280 2.2e-135 486.5 421 54.2
ECA236G3803 Erigeron canadensis HOM05D005487 ORTHO05D007280 1.9e-134 483.4 274 82.1
CBR_g46703 Chara braunii HOM05D005487 ORTHO05D007280 8.8e-124 448.0 471 49.0
Cre17.g732802 Chlamydomonas reinhardtii HOM05D005487 ORTHO05D007280 3.2e-118 429.5 469 47.8
PRCOL_00001448 Prasinoderma coloniale HOM05D005487 ORTHO05D007280 2.3e-108 396.7 424 48.6
Gorai.001G209700 Gossypium raimondii HOM05D005487 ORTHO05D007280 7.1e-49 199.1 115 78.3
RcHm_v2.0_Chr5g0003621 Rosa chinensis HOM05D005487 ORTHO05D007280 7.2e-33 146.0 102 68.6
Gohir.D07G188750 Gossypium hirsutum HOM05D005487 ORTHO05D007280 4.3e-30 136.7 115 59.1
C06p15210 Brassica napus HOM05D005487 ORTHO05D042797 5.3e-28 129.8 89 67.4
BolC6t36696H Brassica oleracea HOM05D005487 ORTHO05D042797 5.3e-28 129.8 89 67.4
SEGI_36702 Sequoiadendron giganteum HOM05D005487 ORTHO05D007280 1.5e-27 128.3 93 64.5
COL.COLO4_27266 Corchorus olitorius HOM05D000025 ORTHO05D000040 1.7e-21 108.2 136 44.1
Gohir.D13G151750 Gossypium hirsutum HOM05D005487 ORTHO05D007280 1.3e-18 98.6 55 81.8
BcaC08g44100 Brassica carinata HOM05D005487 ORTHO05D027150 8.5e-18 95.9 69 62.3
BolC9t55424H Brassica oleracea HOM05D005487 ORTHO05D027150 3.2e-17 94.0 64 67.2
BcaC04g21976 Brassica carinata HOM05D005487 ORTHO05D027150 5.5e-17 93.2 64 65.6
C09p25260 Brassica napus HOM05D005487 ORTHO05D027150 8.0e-16 89.4 66 63.6
SEGI_21127 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 1.6e-08 65.1 86 43.0
MCO13G238 Micromonas commoda HOM05D004309 ORTHO05D005588 6.1e-08 63.2 175 28.6
TAR381G0287 Trochodendron aralioides HOM05D005487 ORTHO05D415274 1.8e-07 61.6 47 63.8
Pp3c6_20080 Physcomitrium patens HOM05D004309 ORTHO05D005588 5.2e-07 60.1 172 29.7
CAN.G327.2 Capsicum annuum HOM05D001287 ORTHO05D010951 3.4e-06 57.4 25 96.0


User provided reference genes

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