Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G009500 Prunus persica HOM05D004898 ORTHO05D005574 1.7e-299 1031.9 536 100.0
MD05G1358600 Malus domestica HOM05D004898 ORTHO05D005574 9.3e-274 946.4 531 91.3
FvH4_3g00891 Fragaria vesca HOM05D004898 ORTHO05D005574 4.8e-262 907.5 539 85.7
FAN21G2703 Fragaria x ananassa HOM05D004898 ORTHO05D005574 3.4e-260 901.4 539 85.0
RcHm_v2.0_Chr5g0001371 Rosa chinensis HOM05D004898 ORTHO05D005574 3.4e-260 901.4 537 85.8
Dinv07411 Davidia involucrata HOM05D004898 ORTHO05D005574 3.9e-256 887.9 527 84.6
MD10G1333000 Malus domestica HOM05D004898 ORTHO05D005574 1.3e-251 872.8 534 83.1
Potri.006G013900 Populus trichocarpa HOM05D004898 ORTHO05D005574 3.2e-250 868.2 530 84.0
Rhsim13G0144800 Rhododendron simsii HOM05D004898 ORTHO05D005574 4.7e-249 864.4 535 81.3
Sabra06G0009800 Salix brachista HOM05D004898 ORTHO05D005574 7.9e-249 863.6 532 82.5
Atru.chr1.2413_Atru.chr1.2414 Acer truncatum HOM05D004898 ORTHO05D005574 1.1e-247 859.8 535 81.5
QL05p069311 Quercus lobata HOM05D004898 ORTHO05D005574 2.2e-246 855.5 533 81.2
Oeu052872.1 Olea europaea HOM05D004898 ORTHO05D005574 1.1e-245 853.2 533 81.6
Manes.08G069675 Manihot esculenta HOM05D004898 ORTHO05D005574 3.5e-244 848.2 532 81.6
CANSAT56G0760 Cannabis sativa HOM05D004898 ORTHO05D005574 7.7e-244 847.0 532 80.1
Eucgr.E03924 Eucalyptus grandis HOM05D004898 ORTHO05D005574 2.2e-243 845.5 528 81.8
Ciclev10014770m.g Citrus clementina HOM05D004898 ORTHO05D005574 1.5e-242 842.8 534 81.3
Cfa000089 Carpinus fangiana HOM05D004898 ORTHO05D005574 1.6e-241 839.3 532 79.9
Actinidia39792 Actinidia chinensis HOM05D004898 ORTHO05D005574 2.7e-241 838.6 535 79.3
TWI38G1092 Tripterygium wilfordii HOM05D004898 ORTHO05D005574 3.6e-241 838.2 536 80.4
Thecc.06G234600 Theobroma cacao HOM05D004898 ORTHO05D005574 3.0e-240 835.1 532 79.7
Prupe.4G009400 Prunus persica HOM05D004898 ORTHO05D005574 5.2e-240 834.3 531 81.2
RcHm_v2.0_Chr5g0001361 Rosa chinensis HOM05D004898 ORTHO05D005574 6.7e-240 833.9 537 79.0
CiPaw.09G103400 Carya illinoinensis HOM05D004898 ORTHO05D005574 4.4e-239 831.2 532 78.9
Cfa000090 Carpinus fangiana HOM05D004898 ORTHO05D005574 4.8e-238 827.8 525 80.8
FvH4_3g00890 Fragaria vesca HOM05D004898 ORTHO05D005574 1.1e-237 826.6 539 78.5
FAN21G0575 Fragaria x ananassa HOM05D004898 ORTHO05D005574 3.5e-236 821.6 539 77.9
Lsat_1_v5_gn_7_13740 Lactuca sativa HOM05D004898 ORTHO05D005574 2.2e-235 818.9 519 80.0
Haze_06951 Corylus avellana HOM05D004898 ORTHO05D005574 2.5e-234 815.5 529 79.4
FAN25G1838 Fragaria x ananassa HOM05D004898 ORTHO05D005574 3.2e-234 815.1 527 80.5
Duzib160G0749 Durio zibethinus HOM05D004898 ORTHO05D005574 8.0e-233 810.4 536 77.1
GSVIVG01003326001 Vitis vinifera HOM05D004898 ORTHO05D005574 2.0e-231 805.8 459 86.9
Nn1g03284 Nelumbo nucifera HOM05D004898 ORTHO05D005574 9.8e-231 803.5 530 78.1
CSS0045138 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 2.8e-230 802.0 534 76.8
SGA_v2.0_scaffold7G03752 Striga asiatica HOM05D004898 ORTHO05D005574 1.8e-229 799.3 521 77.4
Lj1A1241T64 Lonicera japonica HOM05D004898 ORTHO05D005574 7.0e-229 797.3 535 77.9
Thhalv10000848m.g Eutrema salsugineum HOM05D004898 ORTHO05D005574 2.7e-228 795.4 539 76.1
EL10Ac8g20211 Beta vulgaris HOM05D004898 ORTHO05D005574 3.5e-228 795.0 525 76.8
CARHR173790 Cardamine hirsuta HOM05D004898 ORTHO05D005574 7.7e-228 793.9 534 76.2
PSO541G1832 Papaver somniferum HOM05D004898 ORTHO05D005574 7.7e-228 793.9 531 74.8
ClCG01G010280 Citrullus lanatus HOM05D004898 ORTHO05D005574 1.7e-227 792.7 536 75.2
AL8G10410 Arabidopsis lyrata HOM05D004898 ORTHO05D005574 2.2e-227 792.3 535 76.1
MELO3C025563.2 Cucumis melo HOM05D004898 ORTHO05D005574 2.9e-227 792.0 537 75.2
Gohir.D06G160500 Gossypium hirsutum HOM05D004898 ORTHO05D005574 2.9e-227 792.0 532 74.4
Sed0020280 Sechium edule HOM05D004898 ORTHO05D005574 2.9e-227 792.0 537 74.3
Gohir.A06G153700 Gossypium hirsutum HOM05D004898 ORTHO05D005574 3.8e-227 791.6 532 74.2
CAN.G1186.45 Capsicum annuum HOM05D004898 ORTHO05D005574 5.0e-227 791.2 539 75.3
MBI19_g06154_MAGBIO Magnolia biondii HOM05D004898 ORTHO05D005574 6.5e-227 790.8 532 76.1
Cc09_g00800 Coffea canephora HOM05D004898 ORTHO05D005574 1.1e-226 790.0 462 85.1
Hund23404 Selenicereus undatus HOM05D004898 ORTHO05D005574 1.1e-226 790.0 532 75.8
BcaC03g16972 Brassica carinata HOM05D004898 ORTHO05D005574 1.9e-226 789.3 530 76.6
C02p48760 Brassica napus HOM05D004898 ORTHO05D005574 1.9e-226 789.3 530 76.6
BolC2t10970H Brassica oleracea HOM05D004898 ORTHO05D005574 1.9e-226 789.3 530 76.6
A02p31430 Brassica napus HOM05D004898 ORTHO05D005574 2.5e-226 788.9 530 76.8
AUR62012806 Chenopodium quinoa HOM05D004898 ORTHO05D005574 5.5e-226 787.7 520 76.3
AT5G47560 Arabidopsis thaliana HOM05D004898 ORTHO05D005574 3.6e-225 785.0 535 75.5
A06p44970 Brassica napus HOM05D004898 ORTHO05D005574 3.6e-225 785.0 536 75.4
BolC7t43662H Brassica oleracea HOM05D004898 ORTHO05D005574 4.7e-225 784.6 536 75.2
CsaV3_1G017190 Cucumis sativus L. HOM05D004898 ORTHO05D005574 6.1e-225 784.3 537 74.3
BcaC06g31373 Brassica carinata HOM05D004898 ORTHO05D005574 1.4e-224 783.1 534 75.3
C07p31210 Brassica napus HOM05D004898 ORTHO05D005574 1.4e-224 783.1 536 74.8
Carub.0008s0022 Capsella rubella HOM05D004898 ORTHO05D005574 1.4e-224 783.1 536 75.9
Peaxi162Scf00352g00047 Petunia axillaris HOM05D004898 ORTHO05D005574 1.8e-224 782.7 516 78.3
Sp2g12290 Schrenkiella parvula HOM05D004898 ORTHO05D005574 2.3e-224 782.3 534 75.7
A09p23110 Brassica napus HOM05D004898 ORTHO05D005574 3.0e-224 781.9 534 74.9
C09p29850 Brassica napus HOM05D004898 ORTHO05D005574 5.2e-224 781.2 535 74.8
BcaC04g21615 Brassica carinata HOM05D004898 ORTHO05D005574 6.8e-224 780.8 535 74.8
BolC9t55848H Brassica oleracea HOM05D004898 ORTHO05D005574 6.8e-224 780.8 535 74.8
BraA09t37914Z Brassica rapa HOM05D004898 ORTHO05D005574 4.4e-223 778.1 534 74.5
PSO675G0622 Papaver somniferum HOM05D004898 ORTHO05D005574 7.5e-223 777.3 510 76.3
BraA02t08145Z Brassica rapa HOM05D004898 ORTHO05D005574 9.8e-223 776.9 530 75.7
THA.LOC104806731 Tarenaya hassleriana HOM05D004898 ORTHO05D005574 1.7e-222 776.2 532 75.9
Gohir.D10G008600 Gossypium hirsutum HOM05D004898 ORTHO05D005574 4.9e-222 774.6 536 73.7
Gorai.010G187200 Gossypium raimondii HOM05D004898 ORTHO05D005574 4.9e-222 774.6 523 74.0
Aa31LG9G5480 Aethionema arabicum HOM05D004898 ORTHO05D005574 6.3e-222 774.2 523 76.3
BraA06t27368Z Brassica rapa HOM05D004898 ORTHO05D005574 3.1e-221 771.9 526 75.7
ECA240G2526 Erigeron canadensis HOM05D004898 ORTHO05D005574 9.2e-221 770.4 479 81.0
Solyc11g012360.2 Solanum lycopersicum HOM05D004898 ORTHO05D005574 1.2e-220 770.0 539 73.8
HPP92_022800 Vanilla planifolia HOM05D004898 ORTHO05D005574 1.9e-218 762.7 532 72.7
Sc05g0009650 Simmondsia chinensis HOM05D004898 ORTHO05D005574 3.3e-218 761.9 534 73.8
BcaC06g34240 Brassica carinata HOM05D004898 ORTHO05D005574 5.6e-218 761.1 560 71.2
DCAR_030865 Daucus carota HOM05D004898 ORTHO05D005574 5.6e-218 761.1 519 74.0
PGR042G1052 Punica granatum HOM05D004898 ORTHO05D005574 1.6e-217 759.6 530 74.9
HanXRQChr05g0129101 Helianthus annuus HOM05D004898 ORTHO05D005574 3.6e-217 758.4 526 74.3
Gohir.A10G008900 Gossypium hirsutum HOM05D004898 ORTHO05D005574 6.1e-217 757.7 532 73.1
GSVIVG01006080001 Vitis vinifera HOM05D004898 ORTHO05D005574 2.3e-216 755.7 432 86.8
PGSC0003DMG400013282 Solanum tuberosum HOM05D004898 ORTHO05D005574 4.1e-213 745.0 482 77.8
Gorai.011G009400 Gossypium raimondii HOM05D004898 ORTHO05D005574 3.0e-211 738.8 536 71.1
Sopen11g007110 Solanum pennellii HOM05D004898 ORTHO05D005574 3.9e-211 738.4 482 77.4
Glyma.09G010700 Glycine max HOM05D004898 ORTHO05D005574 1.1e-210 736.9 533 69.0
Glyma.15G115200 Glycine max HOM05D004898 ORTHO05D005574 2.5e-210 735.7 535 68.6
COL.COLO4_31899 Corchorus olitorius HOM05D004898 ORTHO05D005574 4.3e-210 734.9 539 71.6
Nitab4.5_0000143g0160 Nicotiana tabacum HOM05D004898 ORTHO05D005574 2.1e-209 732.6 511 74.2
Lalb_Chr18g0057021 Lupinus albus HOM05D004898 ORTHO05D005574 6.8e-208 727.6 529 69.2
Psat4g004680 Pisum sativum HOM05D004898 ORTHO05D005574 6.8e-208 727.6 511 71.6
arahy.Tifrunner.gnm1.ann1.GM6TB3 Arachis hypogaea HOM05D004898 ORTHO05D005574 8.9e-208 727.2 530 69.6
Medtr4g133230 Medicago truncatula HOM05D004898 ORTHO05D005574 1.5e-207 726.5 525 70.3
VMungo0540G1349 Vigna mungo HOM05D004898 ORTHO05D005574 2.0e-207 726.1 529 69.0
arahy.Tifrunner.gnm1.ann1.ZF0ICG Arachis hypogaea HOM05D004898 ORTHO05D005574 2.6e-207 725.7 530 69.4
Lj4g0027564 Lotus japonicus HOM05D004898 ORTHO05D005574 2.2e-206 722.6 531 69.9
arahy.Tifrunner.gnm1.ann1.L2E3EJ Arachis hypogaea HOM05D004898 ORTHO05D005574 1.1e-205 720.3 508 71.5
arahy.Tifrunner.gnm1.ann1.5M9JPT Arachis hypogaea HOM05D004898 ORTHO05D005574 7.0e-205 717.6 524 69.8
Lj6g0016962 Lotus japonicus HOM05D004898 ORTHO05D005574 1.2e-204 716.8 532 68.0
Psat1g175640 Pisum sativum HOM05D004898 ORTHO05D005574 3.5e-204 715.3 535 66.9
Medtr2g026030 Medicago truncatula HOM05D004898 ORTHO05D005574 4.7e-201 704.9 532 66.9
Actinidia34018 Actinidia chinensis HOM05D004898 ORTHO05D005574 4.4e-199 698.4 454 78.2
unitig_748.g7600 Utricularia gibba HOM05D004898 ORTHO05D005574 7.1e-197 691.0 456 73.9
Phvul.006G142700 Phaseolus vulgaris HOM05D004898 ORTHO05D005574 7.8e-196 687.6 465 72.5
Os09g0484900 Oryza sativa ssp. japonica HOM05D004898 ORTHO05D005574 3.6e-193 678.7 533 64.0
SalBow8G1501 Salvia bowleyana HOM05D004898 ORTHO05D005574 1.7e-187 659.8 434 76.3
Zm00001eb316570 Zea mays HOM05D004898 ORTHO05D005574 1.2e-183 647.1 530 61.5
Os08g0503700 Oryza sativa ssp. japonica HOM05D004898 ORTHO05D005574 2.2e-182 642.9 531 61.2
Zm00001eb158920 Zea mays HOM05D004898 ORTHO05D005574 1.4e-181 640.2 532 61.5
VMungo0540G0197 Vigna mungo HOM05D004898 ORTHO05D005574 5.4e-181 638.3 525 62.1
Aqoxy4G02191 Aquilegia oxysepala HOM05D004898 ORTHO05D005574 1.6e-180 636.7 387 81.4
vmacro03635 Vaccinium macrocarpon HOM05D004898 ORTHO05D005574 2.5e-178 629.4 391 79.3
TPR.G30453 Trifolium pratense HOM05D004898 ORTHO05D005574 1.9e-173 613.2 532 60.3
CSS0031856 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 7.4e-170 601.3 386 78.0
Ca_00729_v3 Cicer arietinum L. HOM05D004898 ORTHO05D005574 5.3e-168 595.1 460 64.1
TPR.G30452 Trifolium pratense HOM05D004898 ORTHO05D005574 1.9e-165 586.6 530 59.4
MD10G1332900 Malus domestica HOM05D004898 ORTHO05D005574 4.8e-161 572.0 363 79.6
TPR.G5945 Trifolium pratense HOM05D004898 ORTHO05D005574 1.0e-158 564.3 391 71.1
Ca_21041_v3 Cicer arietinum L. HOM05D004898 ORTHO05D005574 8.4e-158 561.2 386 70.7
Migut.M01405 Erythranthe guttata HOM05D004898 ORTHO05D005574 1.6e-148 530.4 320 80.0
AUR62021848 Chenopodium quinoa HOM05D004898 ORTHO05D005574 3.0e-139 499.6 349 72.8
SEGI_04913 Sequoiadendron giganteum HOM05D004898 ORTHO05D005574 9.7e-138 494.6 325 73.8
AagrBONN_evm.TU.Sc2ySwM_117.1091 Anthoceros agrestis HOM05D004898 ORTHO05D005574 2.1e-132 476.9 537 47.5
SMO118G0209 Selaginella moellendorffii HOM05D004898 ORTHO05D005574 1.3e-129 467.6 474 48.9
SMO270G0136 Selaginella moellendorffii HOM05D004898 ORTHO05D005574 4.2e-125 452.6 456 49.3
Pp3c15_15560 Physcomitrium patens HOM05D004898 ORTHO05D005574 5.5e-117 425.6 504 43.7
Eucgr.L01902 Eucalyptus grandis HOM05D004898 ORTHO05D005574 2.5e-109 400.2 226 89.4
Mapoly0082s0008 Marchantia polymorpha HOM05D004898 ORTHO05D005574 1.6e-108 397.5 546 38.6
Nitab4.5_0003626g0040 Nicotiana tabacum HOM05D004898 ORTHO05D005574 2.1e-92 344.0 254 71.7
BcaC06g31368 Brassica carinata HOM05D004898 ORTHO05D005574 2.4e-75 287.3 194 74.2
FAN22G1464 Fragaria x ananassa HOM05D004898 ORTHO05D005574 3.2e-72 276.9 200 73.0
Glyma.07G265900 Glycine max HOM05D004898 ORTHO05D005574 9.0e-67 258.8 184 72.3
BcaC06g31369 Brassica carinata HOM05D004898 ORTHO05D005574 1.4e-64 251.5 151 82.8
MD10G1332700 Malus domestica HOM05D004898 ORTHO05D005574 3.4e-58 230.3 162 76.5
vmacro03636 Vaccinium macrocarpon HOM05D004898 ORTHO05D005574 1.9e-56 224.6 148 75.7
Glyma.09G010800 Glycine max HOM05D004898 ORTHO05D005574 1.3e-54 218.4 171 63.2
CSS0039577 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 5.8e-50 203.0 147 73.5
TPR.G39985 Trifolium pratense HOM05D004898 ORTHO05D005574 1.4e-48 198.4 159 61.0
TPR.G16605 Trifolium pratense HOM05D004898 ORTHO05D005574 3.5e-39 167.2 145 62.8
CiPaw.02G047500 Carya illinoinensis HOM05D004898 ORTHO05D005574 7.6e-34 149.4 97 75.3
Oeu026504.1 Olea europaea HOM05D004898 ORTHO05D005574 9.3e-32 142.5 149 53.7
MD10G1333600 Malus domestica HOM05D004898 ORTHO05D005574 8.2e-28 129.4 74 87.8
SEGI_30483 Sequoiadendron giganteum HOM05D004898 ORTHO05D005574 1.5e-26 125.2 110 60.0
Cfa025410 Carpinus fangiana HOM05D004898 ORTHO05D005574 7.4e-21 106.3 505 23.8
TPR.G14633 Trifolium pratense HOM05D004898 ORTHO05D005574 1.1e-19 102.4 71 70.4
Cre06.g251650 Chlamydomonas reinhardtii HOM05D004898 ORTHO05D005574 2.5e-16 91.3 469 23.0
SEGI_07134 Sequoiadendron giganteum HOM05D001687 ORTHO05D001608 4.4e-13 80.5 67 58.2
SEGI_26459 Sequoiadendron giganteum HOM05D000824 ORTHO05D001608 4.4e-13 80.5 67 58.2
VMungo1383G2427 Vigna mungo HOM05D035140 ORTHO05D005574 2.0e-10 71.6 46 71.7
Zm00001eb361420 Zea mays HOM05D032919 ORTHO05D005574 4.2e-08 63.9 50 58.0
Zm00001eb349350 Zea mays HOM05D004186 ORTHO05D006965 7.2e-08 63.2 46 60.9
Zm00001eb140760 Zea mays HOM05D004186 ORTHO05D003061 6.1e-07 60.1 46 58.7


User provided reference genes

Program Settings