Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G009400 Prunus persica HOM05D004898 ORTHO05D005574 3.4e-300 1034.2 537 100.0
MD10G1333000 Malus domestica HOM05D004898 ORTHO05D005574 4.8e-254 880.9 524 87.4
RcHm_v2.0_Chr5g0001361 Rosa chinensis HOM05D004898 ORTHO05D005574 8.8e-248 860.1 522 84.5
FvH4_3g00890 Fragaria vesca HOM05D004898 ORTHO05D005574 5.3e-245 850.9 528 83.5
FAN21G0575 Fragaria x ananassa HOM05D004898 ORTHO05D005574 1.7e-243 845.9 528 83.0
RcHm_v2.0_Chr5g0001371 Rosa chinensis HOM05D004898 ORTHO05D005574 2.0e-239 832.4 519 80.7
Prupe.4G009500 Prunus persica HOM05D004898 ORTHO05D005574 7.5e-239 830.5 531 81.2
MD05G1358600 Malus domestica HOM05D004898 ORTHO05D005574 1.4e-237 826.2 521 82.0
FvH4_3g00891 Fragaria vesca HOM05D004898 ORTHO05D005574 4.5e-236 821.2 521 79.8
FAN21G2703 Fragaria x ananassa HOM05D004898 ORTHO05D005574 5.9e-236 820.8 521 79.8
QL05p069311 Quercus lobata HOM05D004898 ORTHO05D005574 3.4e-231 805.1 522 77.8
Potri.006G013900 Populus trichocarpa HOM05D004898 ORTHO05D005574 1.7e-230 802.7 519 78.8
Dinv07411 Davidia involucrata HOM05D004898 ORTHO05D005574 9.1e-229 797.0 526 77.4
Actinidia39792 Actinidia chinensis HOM05D004898 ORTHO05D005574 1.3e-227 793.1 525 76.2
Sabra06G0009800 Salix brachista HOM05D004898 ORTHO05D005574 1.3e-227 793.1 524 77.7
Oeu052872.1 Olea europaea HOM05D004898 ORTHO05D005574 8.6e-227 790.4 519 77.1
Manes.08G069675 Manihot esculenta HOM05D004898 ORTHO05D005574 2.5e-226 788.9 521 77.7
Cfa000090 Carpinus fangiana HOM05D004898 ORTHO05D005574 4.2e-226 788.1 524 77.1
Rhsim13G0144800 Rhododendron simsii HOM05D004898 ORTHO05D005574 6.1e-225 784.3 525 76.8
TWI38G1092 Tripterygium wilfordii HOM05D004898 ORTHO05D005574 2.3e-224 782.3 524 76.3
CiPaw.09G103400 Carya illinoinensis HOM05D004898 ORTHO05D005574 3.0e-224 781.9 519 76.1
Haze_06951 Corylus avellana HOM05D004898 ORTHO05D005574 4.4e-223 778.1 524 77.1
Cfa000089 Carpinus fangiana HOM05D004898 ORTHO05D005574 7.5e-223 777.3 519 75.9
CANSAT56G0760 Cannabis sativa HOM05D004898 ORTHO05D005574 1.1e-221 773.5 520 75.4
Eucgr.E03924 Eucalyptus grandis HOM05D004898 ORTHO05D005574 1.4e-221 773.1 518 76.6
Atru.chr1.2413_Atru.chr1.2414 Acer truncatum HOM05D004898 ORTHO05D005574 4.1e-221 771.5 526 74.5
Ciclev10014770m.g Citrus clementina HOM05D004898 ORTHO05D005574 9.2e-221 770.4 524 76.5
Lj1A1241T64 Lonicera japonica HOM05D004898 ORTHO05D005574 9.2e-221 770.4 524 76.1
Thecc.06G234600 Theobroma cacao HOM05D004898 ORTHO05D005574 7.8e-220 767.3 518 75.7
CSS0045138 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 2.9e-219 765.4 538 72.3
Nn1g03284 Nelumbo nucifera HOM05D004898 ORTHO05D005574 1.9e-218 762.7 518 75.5
FAN25G1838 Fragaria x ananassa HOM05D004898 ORTHO05D005574 5.6e-218 761.1 532 74.2
SGA_v2.0_scaffold7G03752 Striga asiatica HOM05D004898 ORTHO05D005574 2.1e-217 759.2 525 73.3
Sed0020280 Sechium edule HOM05D004898 ORTHO05D005574 1.4e-216 756.5 524 72.5
Lsat_1_v5_gn_7_13740 Lactuca sativa HOM05D004898 ORTHO05D005574 4.0e-216 755.0 517 75.0
Duzib160G0749 Durio zibethinus HOM05D004898 ORTHO05D005574 1.5e-215 753.1 519 74.0
CAN.G1186.45 Capsicum annuum HOM05D004898 ORTHO05D005574 5.8e-215 751.1 527 72.7
MBI19_g06154_MAGBIO Magnolia biondii HOM05D004898 ORTHO05D005574 2.4e-213 745.7 526 71.1
DCAR_030865 Daucus carota HOM05D004898 ORTHO05D005574 5.4e-213 744.6 518 71.8
ClCG01G010280 Citrullus lanatus HOM05D004898 ORTHO05D005574 9.2e-213 743.8 523 71.7
EL10Ac8g20211 Beta vulgaris HOM05D004898 ORTHO05D005574 1.2e-212 743.4 521 72.4
Gohir.D06G160500 Gossypium hirsutum HOM05D004898 ORTHO05D005574 2.7e-212 742.3 519 71.5
Peaxi162Scf00352g00047 Petunia axillaris HOM05D004898 ORTHO05D005574 2.7e-212 742.3 510 74.5
Gohir.A06G153700 Gossypium hirsutum HOM05D004898 ORTHO05D005574 3.5e-212 741.9 519 71.3
Gorai.010G187200 Gossypium raimondii HOM05D004898 ORTHO05D005574 4.6e-212 741.5 529 70.3
GSVIVG01003326001 Vitis vinifera HOM05D004898 ORTHO05D005574 7.8e-212 740.7 457 80.3
MELO3C025563.2 Cucumis melo HOM05D004898 ORTHO05D005574 1.3e-211 740.0 519 71.9
CsaV3_1G017190 Cucumis sativus L. HOM05D004898 ORTHO05D005574 1.3e-211 740.0 522 72.2
PSO541G1832 Papaver somniferum HOM05D004898 ORTHO05D005574 3.9e-211 738.4 518 72.4
AUR62012806 Chenopodium quinoa HOM05D004898 ORTHO05D005574 6.6e-211 737.6 518 72.4
Cc09_g00800 Coffea canephora HOM05D004898 ORTHO05D005574 8.6e-211 737.3 457 80.3
HanXRQChr05g0129101 Helianthus annuus HOM05D004898 ORTHO05D005574 2.1e-209 732.6 521 72.4
Solyc11g012360.2 Solanum lycopersicum HOM05D004898 ORTHO05D005574 4.7e-209 731.5 530 70.6
Aa31LG9G5480 Aethionema arabicum HOM05D004898 ORTHO05D005574 1.1e-208 730.3 521 72.7
AL8G10410 Arabidopsis lyrata HOM05D004898 ORTHO05D005574 1.4e-208 729.9 527 71.5
BcaC03g16972 Brassica carinata HOM05D004898 ORTHO05D005574 5.2e-208 728.0 529 71.5
C02p48760 Brassica napus HOM05D004898 ORTHO05D005574 5.2e-208 728.0 529 71.5
BolC2t10970H Brassica oleracea HOM05D004898 ORTHO05D005574 5.2e-208 728.0 529 71.5
Carub.0008s0022 Capsella rubella HOM05D004898 ORTHO05D005574 5.2e-208 728.0 528 72.0
CARHR173790 Cardamine hirsuta HOM05D004898 ORTHO05D005574 8.9e-208 727.2 529 71.1
BraA02t08145Z Brassica rapa HOM05D004898 ORTHO05D005574 1.2e-207 726.9 529 71.1
Glyma.09G010700 Glycine max HOM05D004898 ORTHO05D005574 3.4e-207 725.3 519 68.6
HPP92_022800 Vanilla planifolia HOM05D004898 ORTHO05D005574 5.8e-207 724.5 519 70.1
A02p31430 Brassica napus HOM05D004898 ORTHO05D005574 7.5e-207 724.2 529 71.3
Thhalv10000848m.g Eutrema salsugineum HOM05D004898 ORTHO05D005574 9.8e-207 723.8 529 70.7
Hund23404 Selenicereus undatus HOM05D004898 ORTHO05D005574 9.8e-207 723.8 522 70.9
A09p23110 Brassica napus HOM05D004898 ORTHO05D005574 1.7e-206 723.0 531 70.2
C09p29850 Brassica napus HOM05D004898 ORTHO05D005574 2.2e-206 722.6 532 70.5
BcaC04g21615 Brassica carinata HOM05D004898 ORTHO05D005574 2.9e-206 722.2 532 70.5
BolC9t55848H Brassica oleracea HOM05D004898 ORTHO05D005574 2.9e-206 722.2 532 70.5
AT5G47560 Arabidopsis thaliana HOM05D004898 ORTHO05D005574 8.3e-206 720.7 527 70.8
Gohir.D10G008600 Gossypium hirsutum HOM05D004898 ORTHO05D005574 8.3e-206 720.7 524 70.6
BraA09t37914Z Brassica rapa HOM05D004898 ORTHO05D005574 2.4e-205 719.2 531 69.9
PSO675G0622 Papaver somniferum HOM05D004898 ORTHO05D005574 3.2e-205 718.8 507 72.2
A06p44970 Brassica napus HOM05D004898 ORTHO05D005574 7.1e-205 717.6 528 70.1
Sp2g12290 Schrenkiella parvula HOM05D004898 ORTHO05D005574 7.1e-205 717.6 531 70.2
BraA06t27368Z Brassica rapa HOM05D004898 ORTHO05D005574 9.2e-205 717.2 532 69.9
BcaC06g31373 Brassica carinata HOM05D004898 ORTHO05D005574 1.2e-204 716.8 528 69.9
BolC7t43662H Brassica oleracea HOM05D004898 ORTHO05D005574 1.6e-204 716.5 528 69.9
Glyma.15G115200 Glycine max HOM05D004898 ORTHO05D005574 3.5e-204 715.3 521 67.6
C07p31210 Brassica napus HOM05D004898 ORTHO05D005574 6.0e-204 714.5 528 69.5
Gohir.A10G008900 Gossypium hirsutum HOM05D004898 ORTHO05D005574 6.0e-204 714.5 527 70.0
THA.LOC104806731 Tarenaya hassleriana HOM05D004898 ORTHO05D005574 1.3e-203 713.4 521 71.2
ECA240G2526 Erigeron canadensis HOM05D004898 ORTHO05D005574 1.7e-203 713.0 477 76.1
Lj6g0016962 Lotus japonicus HOM05D004898 ORTHO05D005574 1.1e-202 710.3 520 68.3
Medtr4g133230 Medicago truncatula HOM05D004898 ORTHO05D005574 4.3e-202 708.4 515 68.5
arahy.Tifrunner.gnm1.ann1.L2E3EJ Arachis hypogaea HOM05D004898 ORTHO05D005574 9.5e-202 707.2 515 68.7
VMungo0540G1349 Vigna mungo HOM05D004898 ORTHO05D005574 2.8e-201 705.7 519 67.2
arahy.Tifrunner.gnm1.ann1.5M9JPT Arachis hypogaea HOM05D004898 ORTHO05D005574 6.2e-201 704.5 515 68.5
Lj4g0027564 Lotus japonicus HOM05D004898 ORTHO05D005574 8.1e-201 704.1 515 69.1
Sopen11g007110 Solanum pennellii HOM05D004898 ORTHO05D005574 8.1e-201 704.1 478 73.8
PGSC0003DMG400013282 Solanum tuberosum HOM05D004898 ORTHO05D005574 8.1e-201 704.1 478 73.8
Sc05g0009650 Simmondsia chinensis HOM05D004898 ORTHO05D005574 4.0e-200 701.8 530 70.4
BcaC06g34240 Brassica carinata HOM05D004898 ORTHO05D005574 6.8e-200 701.0 536 67.9
Psat4g004680 Pisum sativum HOM05D004898 ORTHO05D005574 1.2e-199 700.3 517 68.7
PGR042G1052 Punica granatum HOM05D004898 ORTHO05D005574 3.7e-198 695.3 518 70.3
Lalb_Chr18g0057021 Lupinus albus HOM05D004898 ORTHO05D005574 1.1e-197 693.7 521 67.0
Nitab4.5_0000143g0160 Nicotiana tabacum HOM05D004898 ORTHO05D005574 1.4e-197 693.3 505 71.1
arahy.Tifrunner.gnm1.ann1.GM6TB3 Arachis hypogaea HOM05D004898 ORTHO05D005574 4.1e-197 691.8 517 66.5
arahy.Tifrunner.gnm1.ann1.ZF0ICG Arachis hypogaea HOM05D004898 ORTHO05D005574 4.1e-197 691.8 517 66.5
Gorai.011G009400 Gossypium raimondii HOM05D004898 ORTHO05D005574 4.1e-197 691.8 524 68.9
Medtr2g026030 Medicago truncatula HOM05D004898 ORTHO05D005574 5.4e-197 691.4 518 66.6
GSVIVG01006080001 Vitis vinifera HOM05D004898 ORTHO05D005574 4.6e-196 688.3 430 79.5
Psat1g175640 Pisum sativum HOM05D004898 ORTHO05D005574 1.3e-195 686.8 525 65.1
COL.COLO4_31899 Corchorus olitorius HOM05D004898 ORTHO05D005574 5.6e-194 681.4 528 67.6
Phvul.006G142700 Phaseolus vulgaris HOM05D004898 ORTHO05D005574 3.8e-190 668.7 457 70.7
Actinidia34018 Actinidia chinensis HOM05D004898 ORTHO05D005574 2.1e-188 662.9 446 75.3
unitig_748.g7600 Utricularia gibba HOM05D004898 ORTHO05D005574 9.0e-184 647.5 460 69.1
VMungo0540G0197 Vigna mungo HOM05D004898 ORTHO05D005574 1.7e-182 643.3 518 62.0
Os09g0484900 Oryza sativa ssp. japonica HOM05D004898 ORTHO05D005574 5.4e-181 638.3 534 60.3
SalBow8G1501 Salvia bowleyana HOM05D004898 ORTHO05D005574 1.2e-180 637.1 426 73.9
Zm00001eb158920 Zea mays HOM05D004898 ORTHO05D005574 1.9e-173 613.2 533 59.1
Zm00001eb316570 Zea mays HOM05D004898 ORTHO05D005574 3.5e-172 609.0 525 58.3
MD10G1332900 Malus domestica HOM05D004898 ORTHO05D005574 1.0e-171 607.4 358 87.2
Ca_00729_v3 Cicer arietinum L. HOM05D004898 ORTHO05D005574 1.2e-167 594.0 461 64.4
Os08g0503700 Oryza sativa ssp. japonica HOM05D004898 ORTHO05D005574 3.4e-167 592.4 531 56.7
TPR.G30453 Trifolium pratense HOM05D004898 ORTHO05D005574 4.5e-167 592.0 521 59.3
CSS0031856 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 1.6e-164 583.6 395 72.9
vmacro03635 Vaccinium macrocarpon HOM05D004898 ORTHO05D005574 3.5e-164 582.4 386 74.4
Aqoxy4G02191 Aquilegia oxysepala HOM05D004898 ORTHO05D005574 2.1e-161 573.2 382 74.3
TPR.G30452 Trifolium pratense HOM05D004898 ORTHO05D005574 1.5e-159 567.0 522 59.0
TPR.G5945 Trifolium pratense HOM05D004898 ORTHO05D005574 6.7e-155 551.6 394 68.8
Ca_21041_v3 Cicer arietinum L. HOM05D004898 ORTHO05D005574 7.2e-149 531.6 382 68.1
Migut.M01405 Erythranthe guttata HOM05D004898 ORTHO05D005574 3.0e-131 473.0 315 74.3
AUR62021848 Chenopodium quinoa HOM05D004898 ORTHO05D005574 1.5e-130 470.7 346 70.2
SMO118G0209 Selaginella moellendorffii HOM05D004898 ORTHO05D005574 1.4e-128 464.2 476 49.4
SEGI_04913 Sequoiadendron giganteum HOM05D004898 ORTHO05D005574 5.3e-128 462.2 320 70.3
AagrBONN_evm.TU.Sc2ySwM_117.1091 Anthoceros agrestis HOM05D004898 ORTHO05D005574 1.0e-126 458.0 488 49.2
SMO270G0136 Selaginella moellendorffii HOM05D004898 ORTHO05D005574 2.1e-124 450.3 456 50.4
Pp3c15_15560 Physcomitrium patens HOM05D004898 ORTHO05D005574 1.2e-111 407.9 542 41.9
Mapoly0082s0008 Marchantia polymorpha HOM05D004898 ORTHO05D005574 1.5e-101 374.4 545 38.3
Eucgr.L01902 Eucalyptus grandis HOM05D004898 ORTHO05D005574 9.8e-98 361.7 217 85.3
Nitab4.5_0003626g0040 Nicotiana tabacum HOM05D004898 ORTHO05D005574 3.9e-86 323.2 244 68.9
FAN22G1464 Fragaria x ananassa HOM05D004898 ORTHO05D005574 2.8e-76 290.4 198 78.8
BcaC06g31368 Brassica carinata HOM05D004898 ORTHO05D005574 7.8e-71 272.3 194 68.6
Glyma.07G265900 Glycine max HOM05D004898 ORTHO05D005574 5.4e-64 249.6 177 72.9
BcaC06g31369 Brassica carinata HOM05D004898 ORTHO05D005574 5.8e-58 229.6 164 72.0
Glyma.09G010800 Glycine max HOM05D004898 ORTHO05D005574 5.8e-58 229.6 173 65.3
MD10G1332700 Malus domestica HOM05D004898 ORTHO05D005574 3.4e-50 203.8 156 73.1
vmacro03636 Vaccinium macrocarpon HOM05D004898 ORTHO05D005574 1.1e-48 198.7 137 75.2
CSS0039577 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 3.7e-44 183.7 142 69.7
TPR.G39985 Trifolium pratense HOM05D004898 ORTHO05D005574 4.1e-43 180.3 159 56.6
TPR.G16605 Trifolium pratense HOM05D004898 ORTHO05D005574 1.8e-38 164.9 132 65.9
CiPaw.02G047500 Carya illinoinensis HOM05D004898 ORTHO05D005574 1.8e-30 138.3 99 69.7
Oeu026504.1 Olea europaea HOM05D004898 ORTHO05D005574 9.7e-29 132.5 150 49.3
SEGI_30483 Sequoiadendron giganteum HOM05D004898 ORTHO05D005574 6.3e-28 129.8 110 61.8
MD10G1333600 Malus domestica HOM05D004898 ORTHO05D005574 5.3e-27 126.7 75 86.7
TPR.G14633 Trifolium pratense HOM05D004898 ORTHO05D005574 1.4e-22 112.1 71 77.5
Cfa025410 Carpinus fangiana HOM05D004898 ORTHO05D005574 7.4e-21 106.3 506 25.1
Cre06.g251650 Chlamydomonas reinhardtii HOM05D004898 ORTHO05D005574 1.1e-16 92.4 469 22.6
SEGI_07134 Sequoiadendron giganteum HOM05D001687 ORTHO05D001608 4.0e-14 84.0 67 61.2
SEGI_26459 Sequoiadendron giganteum HOM05D000824 ORTHO05D001608 4.0e-14 84.0 67 61.2
VMungo1383G2427 Vigna mungo HOM05D035140 ORTHO05D005574 2.5e-08 64.7 46 67.4
Zm00001eb361420 Zea mays HOM05D032919 ORTHO05D005574 3.6e-07 60.8 53 52.8
Zm00001eb349350 Zea mays HOM05D004186 ORTHO05D006965 1.0e-06 59.3 48 56.2
Zm00001eb140760 Zea mays HOM05D004186 ORTHO05D003061 3.0e-06 57.8 56 50.0


User provided reference genes

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