Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G007100 Prunus persica HOM05D004987 ORTHO05D005960 8.9e-276 953.0 478 100.0
MD00G1058500 Malus domestica HOM05D004987 ORTHO05D005960 7.3e-254 880.2 478 91.0
RcHm_v2.0_Chr5g0000801 Rosa chinensis HOM05D004987 ORTHO05D005960 3.1e-236 821.6 478 85.4
FvH4_3g00590 Fragaria vesca HOM05D004987 ORTHO05D005960 5.8e-235 817.4 478 84.5
FAN25G3815 Fragaria x ananassa HOM05D004987 ORTHO05D005960 3.8e-234 814.7 478 84.3
QL05p068327 Quercus lobata HOM05D004987 ORTHO05D005960 5.1e-231 804.3 479 83.3
QL05p068818 Quercus lobata HOM05D004987 ORTHO05D005960 5.1e-231 804.3 479 83.3
CiPaw.10G079900 Carya illinoinensis HOM05D004987 ORTHO05D005960 2.5e-230 802.0 479 82.5
CiPaw.09G105700 Carya illinoinensis HOM05D004987 ORTHO05D005960 3.7e-229 798.1 479 81.8
GSVIVG01007214001 Vitis vinifera HOM05D004987 ORTHO05D005960 1.1e-228 796.6 480 80.4
Haze_06979 Corylus avellana HOM05D004987 ORTHO05D005960 2.4e-228 795.4 507 78.7
CANSAT01G2438 Cannabis sativa HOM05D004987 ORTHO05D005960 2.9e-226 788.5 481 81.1
Sed0000076 Sechium edule HOM05D004987 ORTHO05D005960 6.5e-226 787.3 479 80.4
Dinv01708 Davidia involucrata HOM05D004987 ORTHO05D005960 8.7e-223 776.9 491 79.0
ClCG01G010690 Citrullus lanatus HOM05D004987 ORTHO05D005960 1.6e-221 772.7 480 78.8
CsaV3_1G015810 Cucumis sativus L. HOM05D004987 ORTHO05D005960 3.7e-221 771.5 480 78.5
Lalb_Chr20g0119411 Lupinus albus HOM05D004987 ORTHO05D005960 7.6e-219 763.8 480 77.9
Manes.09G081692 Manihot esculenta HOM05D004987 ORTHO05D005960 1.1e-217 760.0 479 76.8
TAR626G0553 Trochodendron aralioides HOM05D004987 ORTHO05D005960 1.1e-217 760.0 484 78.1
Hma1.2p1_0657F.1_g196910 Hydrangea macrophylla HOM05D004987 ORTHO05D005960 7.1e-217 757.3 480 77.1
Duzib235G0100 Durio zibethinus HOM05D004987 ORTHO05D005960 3.0e-215 751.9 480 75.8
Glyma.17G007300 Glycine max HOM05D004987 ORTHO05D005960 3.0e-215 751.9 480 78.1
TAR627G0360 Trochodendron aralioides HOM05D004987 ORTHO05D005960 6.7e-215 750.7 485 76.7
VMungo1215G0994 Vigna mungo HOM05D004987 ORTHO05D005960 6.7e-215 750.7 480 78.3
Thecc.06G237200 Theobroma cacao HOM05D004987 ORTHO05D005960 1.5e-214 749.6 480 76.5
Glyma.07G266900 Glycine max HOM05D004987 ORTHO05D005960 3.3e-214 748.4 480 77.5
Potri.006G017000 Populus trichocarpa HOM05D004987 ORTHO05D005960 5.7e-214 747.7 481 75.3
TWI38G0401 Tripterygium wilfordii HOM05D004987 ORTHO05D005960 7.4e-214 747.3 479 76.2
Ciclev10015100m.g Citrus clementina HOM05D004987 ORTHO05D005960 1.3e-213 746.5 480 76.5
Atru.chr3.1439 Acer truncatum HOM05D004987 ORTHO05D005960 2.8e-213 745.3 479 76.0
CSS0019037 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 1.1e-212 743.4 482 76.6
Phvul.003G085301 Phaseolus vulgaris HOM05D004987 ORTHO05D005960 1.8e-212 742.7 480 77.3
CSS0011246 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 2.4e-212 742.3 482 76.6
CSS0028023 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 4.1e-212 741.5 483 76.2
arahy.Tifrunner.gnm1.ann1.158NIU Arachis hypogaea HOM05D004987 ORTHO05D005960 5.3e-212 741.1 484 76.2
Lj4g0022097 Lotus japonicus HOM05D004987 ORTHO05D005960 9.0e-212 740.3 480 77.1
Gohir.A06G204500 Gossypium hirsutum HOM05D004987 ORTHO05D005960 4.5e-211 738.0 480 74.8
Actinidia26840 Actinidia chinensis HOM05D004987 ORTHO05D005960 5.9e-211 737.6 483 75.4
Psat5g004720 Pisum sativum HOM05D004987 ORTHO05D005960 7.7e-211 737.3 480 76.7
arahy.Tifrunner.gnm1.ann1.K2RD5P Arachis hypogaea HOM05D004987 ORTHO05D005960 1.7e-210 736.1 484 75.8
arahy.Tifrunner.gnm1.ann1.URKQ8K Arachis hypogaea HOM05D004987 ORTHO05D005960 2.9e-210 735.3 496 74.4
Medtr3g117360 Medicago truncatula HOM05D004987 ORTHO05D005960 5.0e-210 734.6 480 75.8
Gorai.010G249200 Gossypium raimondii HOM05D004987 ORTHO05D005960 6.5e-210 734.2 480 74.6
ECA248G1395 Erigeron canadensis HOM05D004987 ORTHO05D005960 1.1e-209 733.4 484 73.8
Ca_15341_v3 Cicer arietinum L. HOM05D004987 ORTHO05D005960 1.9e-209 732.6 480 76.7
Gohir.D06G217000 Gossypium hirsutum HOM05D004987 ORTHO05D005960 3.2e-209 731.9 480 74.6
Nn1g07472 Nelumbo nucifera HOM05D004987 ORTHO05D005960 3.2e-209 731.9 481 74.4
HanXRQChr01g0004771 Helianthus annuus HOM05D004987 ORTHO05D005960 3.0e-207 725.3 480 73.5
Peaxi162Scf00488g00925 Petunia axillaris HOM05D004987 ORTHO05D005960 5.1e-207 724.5 482 74.1
PGR004G2886 Punica granatum HOM05D004987 ORTHO05D005960 6.7e-207 724.2 480 72.7
Ah.02g126930 Amaranthus hybridus HOM05D004987 ORTHO05D005960 1.1e-206 723.4 477 74.6
CAN.G9.5 Capsicum annuum HOM05D004987 ORTHO05D005960 2.5e-206 722.2 479 73.1
AUR62018393 Chenopodium quinoa HOM05D004987 ORTHO05D005960 4.3e-206 721.5 482 74.3
Solyc08g065990.3 Solanum lycopersicum HOM05D004987 ORTHO05D005960 4.8e-205 718.0 479 73.1
Migut.M01428 Erythranthe guttata HOM05D004987 ORTHO05D005960 8.2e-205 717.2 479 72.9
Nitab4.5_0000318g0050 Nicotiana tabacum HOM05D004987 ORTHO05D005960 1.1e-204 716.8 479 72.4
PGSC0003DMG400025463 Solanum tuberosum HOM05D004987 ORTHO05D005960 1.8e-204 716.1 480 73.3
Sopen08g019660 Solanum pennellii HOM05D004987 ORTHO05D005960 2.4e-204 715.7 479 73.1
vmacro03626 Vaccinium macrocarpon HOM05D004987 ORTHO05D005960 4.1e-204 714.9 484 72.7
arahy.Tifrunner.gnm1.ann1.016YCC Arachis hypogaea HOM05D004987 ORTHO05D005960 6.9e-204 714.1 517 71.2
MSTRG.13111 Avicennia marina HOM05D004987 ORTHO05D005960 1.2e-203 713.4 479 73.1
Lj2C259G8 Lonicera japonica HOM05D004987 ORTHO05D005960 3.4e-203 711.8 479 74.5
Aa31LG2G12480 Aethionema arabicum HOM05D004987 ORTHO05D005960 5.0e-202 708.0 479 71.4
DCAR_014269 Daucus carota HOM05D004987 ORTHO05D005960 1.9e-201 706.1 481 73.6
EL10Ac3g07283 Beta vulgaris HOM05D004987 ORTHO05D005960 4.2e-201 704.9 486 72.6
Lsat_1_v5_gn_6_62021 Lactuca sativa HOM05D004987 ORTHO05D005960 4.2e-201 704.9 481 71.7
Oeu030104.1 Olea europaea HOM05D004987 ORTHO05D005960 9.4e-201 703.7 479 72.7
MBI19_g25589_MAGBIO Magnolia biondii HOM05D004987 ORTHO05D005960 1.8e-199 699.5 481 71.9
Cc09_g00600 Coffea canephora HOM05D004987 ORTHO05D005960 3.0e-199 698.7 493 70.2
MD10G1336400 Malus domestica HOM05D004987 ORTHO05D005960 5.1e-199 698.0 422 83.6
SalBow8G4301 Salvia bowleyana HOM05D004987 ORTHO05D005960 3.3e-198 695.3 479 69.9
MSTRG.14600 Avicennia marina HOM05D004987 ORTHO05D005960 7.4e-198 694.1 479 72.0
SGA_v2.0_scaffold54G19512 Striga asiatica HOM05D004987 ORTHO05D005960 9.7e-198 693.7 479 71.4
Rhsim13G0142900 Rhododendron simsii HOM05D004987 ORTHO05D005960 1.1e-196 690.3 452 74.6
Aqoxy5G03428 Aquilegia oxysepala HOM05D004987 ORTHO05D005960 1.4e-196 689.9 507 68.0
Carub.0007s2509 Capsella rubella HOM05D004987 ORTHO05D005960 2.4e-196 689.1 480 70.0
AL7G38570 Arabidopsis lyrata HOM05D004987 ORTHO05D005960 5.3e-196 688.0 480 70.0
Sc13g0000910 Simmondsia chinensis HOM05D004987 ORTHO05D005960 1.5e-195 686.4 448 73.7
SGA_v2.0_scaffold111G31506 Striga asiatica HOM05D004987 ORTHO05D005960 1.0e-194 683.7 499 67.9
Medtr4g062080 Medicago truncatula HOM05D004987 ORTHO05D005960 2.2e-194 682.6 482 71.2
Sabra16G0013000 Salix brachista HOM05D004987 ORTHO05D005960 3.8e-194 681.8 571 62.3
Sp7g14970 Schrenkiella parvula HOM05D004987 ORTHO05D005960 8.5e-194 680.6 480 68.8
AT4G16440 Arabidopsis thaliana HOM05D004987 ORTHO05D005960 1.9e-193 679.5 480 69.2
CDE07G0546 Ceratophyllum demersum HOM05D004987 ORTHO05D005960 7.2e-193 677.6 479 69.5
Thhalv10025117m.g Eutrema salsugineum HOM05D004987 ORTHO05D005960 6.1e-192 674.5 480 68.3
Oeu057036.1 Olea europaea HOM05D004987 ORTHO05D005960 8.0e-192 674.1 479 70.6
PSO017G3064 Papaver somniferum HOM05D004987 ORTHO05D005960 8.0e-192 674.1 488 70.3
MELO3C025535.2 Cucumis melo HOM05D004987 ORTHO05D005960 1.4e-191 673.3 415 77.3
CARHR222790 Cardamine hirsuta HOM05D004987 ORTHO05D005960 5.2e-191 671.4 481 68.0
C01p26430 Brassica napus HOM05D004987 ORTHO05D005960 4.4e-190 668.3 480 67.9
ATR0594G143 Amborella trichopoda HOM05D004987 ORTHO05D005960 7.5e-190 667.5 491 68.2
A01p21160 Brassica napus HOM05D004987 ORTHO05D005960 9.7e-190 667.2 480 67.5
Nitab4.5_0002021g0020 Nicotiana tabacum HOM05D004987 ORTHO05D005960 1.3e-189 666.8 480 68.5
BcaC09g50343 Brassica carinata HOM05D004987 ORTHO05D005960 1.7e-189 666.4 480 67.7
BolC1t02590H Brassica oleracea HOM05D004987 ORTHO05D005960 1.7e-189 666.4 480 67.7
PSO675G1563 Papaver somniferum HOM05D004987 ORTHO05D005960 1.7e-189 666.4 487 69.6
BcaNung00197 Brassica carinata HOM05D004987 ORTHO05D005960 2.4e-188 662.5 480 66.9
Zm00001eb214910 Zea mays HOM05D004987 ORTHO05D005960 1.6e-187 659.8 479 66.6
TPR.G32192 Trifolium pratense HOM05D004987 ORTHO05D005960 2.0e-187 659.4 432 75.2
unitig_749.g13618 Utricularia gibba HOM05D004987 ORTHO05D005960 4.5e-187 658.3 479 67.2
Eucgr.D01441 Eucalyptus grandis HOM05D004987 ORTHO05D005960 1.7e-186 656.4 429 74.4
Zm00001eb057200 Zea mays HOM05D004987 ORTHO05D005960 2.2e-186 656.0 478 66.3
BraA01t02026Z Brassica rapa HOM05D004987 ORTHO05D005960 2.9e-186 655.6 504 64.5
Lsat_1_v5_gn_0_32381 Lactuca sativa HOM05D004987 ORTHO05D005960 1.0e-183 647.1 464 69.8
Sabra06G0012100 Salix brachista HOM05D004987 ORTHO05D005960 8.8e-183 644.0 517 65.2
Os03g0748700 Oryza sativa ssp. japonica HOM05D004987 ORTHO05D005960 7.5e-182 641.0 478 65.5
SHI24440 Sapria himalayana HOM05D004987 ORTHO05D005960 4.8e-181 638.3 498 65.1
AUR62030265 Chenopodium quinoa HOM05D004987 ORTHO05D005960 3.6e-176 622.1 415 72.5
Lj2g0000431 Lotus japonicus HOM05D004987 ORTHO05D005960 1.3e-173 613.6 482 66.8
Cc10_g02370 Coffea canephora HOM05D004987 ORTHO05D005960 1.0e-170 604.0 558 57.9
Lsat_1_v5_gn_6_62041 Lactuca sativa HOM05D004987 ORTHO05D005960 2.9e-170 602.4 480 62.9
AagrBONN_evm.TU.Sc2ySwM_368.1142 Anthoceros agrestis HOM05D004987 ORTHO05D005960 2.2e-165 586.3 486 59.1
SMO356G0034 Selaginella moellendorffii HOM05D004987 ORTHO05D005960 2.4e-164 582.8 477 61.6
Mapoly0020s0065 Marchantia polymorpha HOM05D004987 ORTHO05D005960 1.1e-161 573.9 491 57.2
Pp3c6_16630 Physcomitrium patens HOM05D004987 ORTHO05D005960 2.1e-160 569.7 478 57.1
vmacro23178 Vaccinium macrocarpon HOM05D004987 ORTHO05D005960 2.3e-154 549.7 413 67.1
Potri.016G008700 Populus trichocarpa HOM05D004987 ORTHO05D005960 9.2e-148 527.7 357 74.8
CsaV3_UNG059470 Cucumis sativus L. HOM05D004987 ORTHO05D005960 3.6e-144 515.8 496 56.9
Cpa.g.sc27.253 Carica papaya HOM05D004987 ORTHO05D005960 9.2e-140 501.1 480 55.4
Cre03.g200550 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 5.0e-101 372.5 598 38.6
MCO07G565 Micromonas commoda HOM05D004987 ORTHO05D005960 6.7e-98 362.1 520 43.8
SEGI_15851 Sequoiadendron giganteum HOM05D004987 ORTHO05D005960 1.3e-96 357.8 253 66.4
HPP92_013953 Vanilla planifolia HOM05D004987 ORTHO05D005960 2.5e-92 343.6 261 67.0
Lsat_1_v5_gn_6_62060 Lactuca sativa HOM05D004987 ORTHO05D005960 1.4e-84 317.8 215 75.8
Ciclev10027102m.g Citrus clementina HOM05D004987 ORTHO05D005960 4.1e-79 299.7 182 73.1
FAN21G3552 Fragaria x ananassa HOM05D004987 ORTHO05D005960 2.5e-76 290.4 184 85.3
Atru.chr1.2336 Acer truncatum HOM05D004987 ORTHO05D005960 1.6e-75 287.7 384 46.6
PRCOL_00000051 Prasinoderma coloniale HOM05D004987 ORTHO05D005960 3.0e-74 283.5 547 35.8
AagrBONN_evm.TU.Sc2ySwM_368.3306 Anthoceros agrestis HOM05D004987 ORTHO05D005960 4.0e-74 283.1 221 61.1
ATR0751G100 Amborella trichopoda HOM05D004987 ORTHO05D005960 1.6e-70 271.2 269 54.3
Ciclev10004004m.g Citrus clementina HOM05D004987 ORTHO05D005960 1.3e-64 251.5 190 61.1
TWI38G1931 Tripterygium wilfordii HOM05D004987 ORTHO05D005960 1.7e-61 241.1 254 50.4
Cfa026410 Carpinus fangiana HOM05D004987 ORTHO05D005960 4.4e-57 226.5 488 33.8
arahy.Tifrunner.gnm1.ann1.24PAJQ Arachis hypogaea HOM05D004987 ORTHO05D005960 2.8e-51 207.2 431 35.7
Aqoxy4G02991 Aquilegia oxysepala HOM05D000252 ORTHO05D000307 4.4e-49 199.9 171 60.2
CBR_g26339 Chara braunii HOM05D004987 ORTHO05D005960 3.1e-42 177.2 382 32.7
Cre03.g199800 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 9.2e-39 165.6 498 27.5
Cre09.g396600 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 9.2e-39 165.6 454 29.7
arahy.Tifrunner.gnm1.ann1.4D4U0P Arachis hypogaea HOM05D004987 ORTHO05D005960 2.7e-38 164.1 211 47.9
Aqoxy6G02697 Aquilegia oxysepala HOM05D004987 ORTHO05D005960 2.0e-33 147.9 220 40.0
arahy.Tifrunner.gnm1.ann1.GKV1XW Arachis hypogaea HOM05D004987 ORTHO05D005960 1.2e-25 122.1 181 48.1
MELO3C000413.2 Cucumis melo HOM05D004987 ORTHO05D005960 1.9e-20 104.8 66 86.4
GSVIVG01005416001 Vitis vinifera HOM05D004987 ORTHO05D005960 2.4e-18 97.8 66 78.8
TPR.G35318 Trifolium pratense HOM05D004987 ORTHO05D005960 9.3e-15 85.9 66 71.2
AagrBONN_evm.TU.Sc2ySwM_368.1145 Anthoceros agrestis HOM05D004987 ORTHO05D005960 9.6e-12 75.9 134 38.1
arahy.Tifrunner.gnm1.ann1.YI5A3W Arachis hypogaea HOM05D004987 ORTHO05D005960 9.6e-12 75.9 64 59.4
PSO339G0319 Papaver somniferum HOM05D004987 ORTHO05D005960 1.1e-10 72.4 69 58.0
PSO832G0476 Papaver somniferum HOM05D000145 ORTHO05D001435 1.1e-10 72.4 68 58.8
arahy.Tifrunner.gnm1.ann1.N1GFR4 Arachis hypogaea HOM05D004987 ORTHO05D005960 2.2e-08 64.7 59 55.9
AagrBONN_evm.TU.Sc2ySwM_368.1144 Anthoceros agrestis HOM05D004987 ORTHO05D005960 6.4e-08 63.2 83 47.0
arahy.Tifrunner.gnm1.ann1.028TPL Arachis hypogaea HOM05D004987 ORTHO05D005960 2.4e-07 61.2 70 48.6


User provided reference genes

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