Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G004300 Prunus persica HOM05D003761 ORTHO05D004412 2.1e-126 455.7 223 100.0
MD10G1338600 Malus domestica HOM05D003761 ORTHO05D004412 1.4e-77 293.5 229 67.7
MD05G1360900 Malus domestica HOM05D003761 ORTHO05D004412 1.1e-74 283.9 246 65.4
FvH4_3g00370 Fragaria vesca HOM05D003761 ORTHO05D004412 1.0e-69 267.3 222 60.8
FAN25G2178 Fragaria x ananassa HOM05D003761 ORTHO05D004412 4.4e-68 261.9 222 59.0
FAN21G2431 Fragaria x ananassa HOM05D003761 ORTHO05D004412 3.7e-67 258.8 223 59.2
Cfa000041 Carpinus fangiana HOM05D003761 ORTHO05D004412 2.8e-54 216.1 217 53.9
Haze_07014 Corylus avellana HOM05D003761 ORTHO05D004412 3.1e-53 212.6 217 54.4
CANSAT56G1869 Cannabis sativa HOM05D003761 ORTHO05D004412 4.4e-52 208.8 190 56.8
CiPaw.09G108600 Carya illinoinensis HOM05D003761 ORTHO05D004412 7.5e-52 208.0 158 62.0
Ciclev10016770m.g Citrus clementina HOM05D003761 ORTHO05D004412 3.7e-51 205.7 216 54.2
Atru.chr1.2273 Acer truncatum HOM05D003761 ORTHO05D004412 1.1e-50 204.1 223 53.8
QL05p067831 Quercus lobata HOM05D003761 ORTHO05D004412 1.1e-50 204.1 216 50.0
Thecc.06G240300 Theobroma cacao HOM05D003761 ORTHO05D004412 1.4e-50 203.8 191 56.5
Duzib192G0597 Durio zibethinus HOM05D003761 ORTHO05D004412 1.6e-49 200.3 221 50.7
Sabra06G0004500 Salix brachista HOM05D003761 ORTHO05D004412 2.1e-49 199.9 163 59.5
Potri.006G005600 Populus trichocarpa HOM05D003761 ORTHO05D004412 2.7e-49 199.5 215 50.7
Eucgr.E03855 Eucalyptus grandis HOM05D003761 ORTHO05D004412 4.6e-49 198.7 165 58.8
Potri.016G006200 Populus trichocarpa HOM05D003761 ORTHO05D004412 5.1e-48 195.3 169 56.8
TWI38G2030 Tripterygium wilfordii HOM05D003761 ORTHO05D004412 1.1e-47 194.1 221 51.6
Glyma.17G005900 Glycine max HOM05D003761 ORTHO05D004412 1.9e-47 193.4 214 52.8
PGR042G2523 Punica granatum HOM05D003761 ORTHO05D004412 4.3e-47 192.2 217 47.5
Cpa.g.sc27.232 Carica papaya HOM05D003761 ORTHO05D004412 5.6e-47 191.8 184 51.6
Sabra16G0011000 Salix brachista HOM05D003761 ORTHO05D004412 1.2e-46 190.7 174 56.3
Gorai.010G248800 Gossypium raimondii HOM05D003761 ORTHO05D004412 1.6e-46 190.3 186 52.2
Gohir.A06G204100 Gossypium hirsutum HOM05D003761 ORTHO05D004412 2.1e-46 189.9 186 51.1
COL.COLO4_31936 Corchorus olitorius HOM05D003761 ORTHO05D004412 4.7e-46 188.7 152 59.9
Gohir.D06G217400 Gossypium hirsutum HOM05D003761 ORTHO05D004412 4.7e-46 188.7 188 51.6
Psat4g002880 Pisum sativum HOM05D003761 ORTHO05D004412 8.1e-46 188.0 200 53.0
Lalb_Chr15g0088211 Lupinus albus HOM05D003761 ORTHO05D004412 2.0e-44 183.3 165 55.8
Hma1.2p1_1175F.1_g263990 Hydrangea macrophylla HOM05D003761 ORTHO05D004412 2.6e-44 183.0 167 55.7
GSVIVG01005138001 Vitis vinifera HOM05D003761 ORTHO05D004412 2.6e-44 183.0 156 57.1
Manes.09G083000 Manihot esculenta HOM05D003761 ORTHO05D004412 5.8e-44 181.8 186 52.2
Phvul.003G086700 Phaseolus vulgaris HOM05D003761 ORTHO05D004412 9.9e-44 181.0 160 57.5
VMungo1215G0779 Vigna mungo HOM05D003761 ORTHO05D004412 1.7e-43 180.3 212 48.1
Ca_20995_v3 Cicer arietinum L. HOM05D003761 ORTHO05D004412 2.2e-43 179.9 218 47.2
TPR.G5987 Trifolium pratense HOM05D003761 ORTHO05D004412 2.9e-43 179.5 159 58.5
Medtr4g133932 Medicago truncatula HOM05D003761 ORTHO05D004412 8.4e-43 177.9 156 58.3
Sed0014180 Sechium edule HOM05D003761 ORTHO05D004412 1.4e-42 177.2 163 54.6
TWI38G1412 Tripterygium wilfordii HOM05D003761 ORTHO05D004412 1.9e-42 176.8 227 46.3
Lj4g0001357 Lotus japonicus HOM05D003761 ORTHO05D004412 2.7e-41 172.9 151 57.6
CsaV3_1G015780 Cucumis sativus L. HOM05D003761 ORTHO05D004412 3.5e-41 172.6 168 51.2
CsaV3_UNG065500 Cucumis sativus L. HOM05D003761 ORTHO05D004412 3.5e-41 172.6 168 51.2
Lj6g0023004 Lotus japonicus HOM05D003761 ORTHO05D004412 7.8e-41 171.4 200 47.0
MELO3C025526.2 Cucumis melo HOM05D003761 ORTHO05D004412 1.7e-40 170.2 168 49.4
Rhsim13G0141000 Rhododendron simsii HOM05D003761 ORTHO05D004412 3.0e-40 169.5 216 44.9
ClCG01G010750 Citrullus lanatus HOM05D003761 ORTHO05D004412 3.9e-40 169.1 165 52.7
Sed0021615 Sechium edule HOM05D003761 ORTHO05D004412 5.1e-40 168.7 158 51.9
AUR62021816 Chenopodium quinoa HOM05D003761 ORTHO05D004412 6.6e-40 168.3 158 50.6
TAR626G0912 Trochodendron aralioides HOM05D003761 ORTHO05D004412 1.1e-39 167.5 164 54.9
AUR62012843 Chenopodium quinoa HOM05D003761 ORTHO05D004412 5.6e-39 165.2 158 52.5
Eucgr.L00155 Eucalyptus grandis HOM05D003761 ORTHO05D004412 9.6e-39 164.5 144 54.2
PGR004G2813 Punica granatum HOM05D003761 ORTHO05D004412 1.2e-38 164.1 208 46.6
vmacro03612 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 2.1e-38 163.3 169 50.9
Lj2C256G8 Lonicera japonica HOM05D003761 ORTHO05D004412 2.8e-38 162.9 171 51.5
arahy.Tifrunner.gnm1.ann1.UZ71G8 Arachis hypogaea HOM05D003761 ORTHO05D004412 6.2e-38 161.8 167 52.1
arahy.Tifrunner.gnm1.ann1.YY2BB8 Arachis hypogaea HOM05D003761 ORTHO05D004412 1.1e-37 161.0 167 52.7
CSS0009294 Camellia sinensis var. sinensis HOM05D003761 ORTHO05D004412 2.4e-37 159.8 160 53.8
CSS0045719 Camellia sinensis var. sinensis HOM05D003761 ORTHO05D004412 2.4e-37 159.8 160 53.8
Lalb_Chr13g0304361 Lupinus albus HOM05D003761 ORTHO05D004412 3.1e-37 159.5 171 50.9
Eucgr.L00154 Eucalyptus grandis HOM05D003761 ORTHO05D004412 4.0e-37 159.1 144 53.5
Nn1g07502 Nelumbo nucifera HOM05D003761 ORTHO05D004412 4.0e-37 159.1 170 48.8
vmacro03611 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 2.0e-36 156.8 161 51.6
vmacro23224 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 2.0e-36 156.8 161 51.6
Actinidia11903 Actinidia chinensis HOM05D003761 ORTHO05D004412 2.6e-36 156.4 164 48.8
Actinidia39257 Actinidia chinensis HOM05D003761 ORTHO05D004412 4.4e-36 155.6 157 49.7
EL10Ac8g20260 Beta vulgaris HOM05D003761 ORTHO05D004412 7.6e-36 154.8 215 41.9
CDE10G1059 Ceratophyllum demersum HOM05D003761 ORTHO05D004412 4.9e-35 152.1 169 45.0
MBI18_g42884_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 1.9e-34 150.2 161 46.0
Sopen11g006960 Solanum pennellii HOM05D003761 ORTHO05D004412 4.2e-34 149.1 158 49.4
Dinv15342 Davidia involucrata HOM05D003761 ORTHO05D004412 7.1e-34 148.3 144 53.5
Sc24g0000400 Simmondsia chinensis HOM05D003761 ORTHO05D004412 9.3e-34 147.9 222 40.1
HPP92_024932 Vanilla planifolia HOM05D003761 ORTHO05D004412 7.8e-33 144.8 199 43.2
Solyc11g012170.1 Solanum lycopersicum HOM05D003761 ORTHO05D004412 1.0e-32 144.4 152 50.7
Aqoxy4G01086 Aquilegia oxysepala HOM05D003761 ORTHO05D004412 1.7e-32 143.7 167 44.9
HPP92_024936 Vanilla planifolia HOM05D003761 ORTHO05D004412 2.3e-32 143.3 199 42.7
ECA248G3040 Erigeron canadensis HOM05D003761 ORTHO05D004412 3.0e-32 142.9 164 44.5
Actinidia02285 Actinidia chinensis HOM05D000829 ORTHO05D000690 3.9e-32 142.5 169 46.2
MSTRG.14590 Avicennia marina HOM05D003761 ORTHO05D004412 5.1e-32 142.1 155 47.7
CAN.G1186.30 Capsicum annuum HOM05D003761 ORTHO05D004412 5.1e-32 142.1 153 49.7
Cc09_g00350 Coffea canephora HOM05D003761 ORTHO05D004412 5.1e-32 142.1 154 50.0
DCAR_030834 Daucus carota HOM05D003761 ORTHO05D004412 1.5e-31 140.6 155 47.7
PSO675G1588 Papaver somniferum HOM05D003761 ORTHO05D004412 1.5e-31 140.6 166 45.2
Oeu002779.1 Olea europaea HOM05D003761 ORTHO05D004412 2.5e-31 139.8 217 38.7
PGSC0003DMG400013274 Solanum tuberosum HOM05D003761 ORTHO05D004412 4.3e-31 139.0 152 50.0
HanXRQChr01g0003591 Helianthus annuus HOM05D003761 ORTHO05D004412 9.6e-31 137.9 165 41.8
MBI18_g27019_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 1.3e-30 137.5 147 45.6
Lsat_1_v5_gn_7_13080 Lactuca sativa HOM05D003761 ORTHO05D004412 1.6e-30 137.1 154 44.2
MBI19_g14888_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 2.1e-30 136.7 136 51.5
Peaxi162Scf00558g00515 Petunia axillaris HOM05D003761 ORTHO05D004412 1.8e-29 133.7 151 47.7
PSO541G3650 Papaver somniferum HOM05D003761 ORTHO05D004412 5.3e-29 132.1 171 42.7
Hma1.2p1_1175F.1_g263980 Hydrangea macrophylla HOM05D003761 ORTHO05D004412 6.9e-29 131.7 103 56.3
Ah.09g233900 Amaranthus hybridus HOM05D003761 ORTHO05D004412 9.0e-29 131.3 158 43.7
MSTRG.13107 Avicennia marina HOM05D003761 ORTHO05D004412 1.5e-28 130.6 201 38.8
Oeu057021.1 Olea europaea HOM05D003761 ORTHO05D004412 1.3e-27 127.5 143 45.5
Sp2g12340 Schrenkiella parvula HOM05D003761 ORTHO05D004412 1.3e-27 127.5 150 44.7
Migut.H01629 Erythranthe guttata HOM05D003761 ORTHO05D004412 2.2e-27 126.7 152 45.4
Aa31LG9G5380 Aethionema arabicum HOM05D003761 ORTHO05D004412 2.9e-27 126.3 152 43.4
Lsat_1_v5_gn_1_130120 Lactuca sativa HOM05D003761 ORTHO05D004412 2.9e-27 126.3 153 41.8
AT5G47635 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 3.8e-27 125.9 150 43.3
Nitab4.5_0000143g0280 Nicotiana tabacum HOM05D003761 ORTHO05D004412 6.4e-27 125.2 159 42.8
SalBow8G1906 Salvia bowleyana HOM05D003761 ORTHO05D004412 6.4e-27 125.2 150 48.0
THA.LOC104806736 Tarenaya hassleriana HOM05D003761 ORTHO05D004412 2.4e-26 123.2 159 39.6
Thhalv10001056m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 3.2e-26 122.9 150 41.3
Aa31LG2G12410 Aethionema arabicum HOM05D003761 ORTHO05D004412 5.4e-26 122.1 134 43.3
BcaC06g31357 Brassica carinata HOM05D003761 ORTHO05D004412 9.3e-26 121.3 150 42.0
Sc05g0009870 Simmondsia chinensis HOM05D003761 ORTHO05D004412 9.3e-26 121.3 104 51.0
AL8G10320 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 2.1e-25 120.2 150 41.3
Nitab4.5_0001198g0070 Nicotiana tabacum HOM05D003761 ORTHO05D004412 3.5e-25 119.4 155 44.5
Cpa.g.sc27.234 Carica papaya HOM05D003761 ORTHO05D004412 6.0e-25 118.6 102 52.9
SGA_v2.0_scaffold49G18223 Striga asiatica HOM05D003761 ORTHO05D004412 6.0e-25 118.6 142 46.5
A06p44900 Brassica napus HOM05D003761 ORTHO05D004412 7.9e-25 118.2 150 41.3
BraA06t27361Z Brassica rapa HOM05D003761 ORTHO05D004412 7.9e-25 118.2 150 41.3
Carub.0004s2229 Capsella rubella HOM05D003761 ORTHO05D004412 7.9e-25 118.2 156 41.0
Aa31LG5G19480 Aethionema arabicum HOM05D003761 ORTHO05D004412 1.0e-24 117.9 153 40.5
BcaC04g21612 Brassica carinata HOM05D003761 ORTHO05D004412 1.0e-24 117.9 145 40.0
C09p29870 Brassica napus HOM05D003761 ORTHO05D004412 1.0e-24 117.9 145 40.0
Oeu025960.1 Olea europaea HOM05D003761 ORTHO05D004412 1.0e-24 117.9 158 41.8
SGA_v2.0_scaffold186G40120 Striga asiatica HOM05D003761 ORTHO05D004412 1.0e-24 117.9 146 43.8
A05p06360 Brassica napus HOM05D003761 ORTHO05D004412 3.0e-24 116.3 156 40.4
BraA05t19604Z Brassica rapa HOM05D003761 ORTHO05D004412 3.0e-24 116.3 156 40.4
Carub.0008s0015 Capsella rubella HOM05D003761 ORTHO05D004412 3.0e-24 116.3 150 39.3
BcaNung03472 Brassica carinata HOM05D003761 ORTHO05D004412 6.7e-24 115.2 155 38.7
BcaB02g09050 Brassica carinata HOM05D003761 ORTHO05D004412 8.7e-24 114.8 156 39.7
BolC4t22355H Brassica oleracea HOM05D003761 ORTHO05D004412 8.7e-24 114.8 156 39.7
Thhalv10017342m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 8.7e-24 114.8 157 38.2
SGA_v2.0_scaffold7G03701 Striga asiatica HOM05D003761 ORTHO05D004412 1.1e-23 114.4 143 44.8
A09p23140 Brassica napus HOM05D003761 ORTHO05D004412 1.5e-23 114.0 146 39.7
BraA09t37917Z Brassica rapa HOM05D003761 ORTHO05D004412 1.5e-23 114.0 146 39.7
BcaB07g30768 Brassica carinata HOM05D003761 ORTHO05D004412 2.5e-23 113.2 151 38.4
A03p50350 Brassica napus HOM05D003761 ORTHO05D004412 2.5e-23 113.2 142 41.5
BraA03t14124Z Brassica rapa HOM05D003761 ORTHO05D004412 2.5e-23 113.2 142 41.5
MSTRG.7132 Avicennia marina HOM05D003761 ORTHO05D004412 4.3e-23 112.5 142 43.0
BcaB02g09051 Brassica carinata HOM05D003761 ORTHO05D004412 5.6e-23 112.1 157 38.9
C07p31280 Brassica napus HOM05D003761 ORTHO05D004412 5.6e-23 112.1 150 39.3
Migut.M01442 Erythranthe guttata HOM05D003761 ORTHO05D004412 5.6e-23 112.1 147 42.9
RcHm_v2.0_Chr5g0000571 Rosa chinensis HOM05D003761 ORTHO05D004412 7.4e-23 111.7 117 53.8
BcaC06g33549 Brassica carinata HOM05D003761 ORTHO05D004412 9.6e-23 111.3 142 40.8
C07p48660 Brassica napus HOM05D003761 ORTHO05D004412 9.6e-23 111.3 142 40.8
BolC7t45373H Brassica oleracea HOM05D003761 ORTHO05D004412 9.6e-23 111.3 142 40.8
CARHR173680 Cardamine hirsuta HOM05D003761 ORTHO05D004412 9.6e-23 111.3 143 39.9
BolC4t28284H Brassica oleracea HOM05D003761 ORTHO05D004412 1.3e-22 110.9 157 38.2
AT4G17215 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 1.6e-22 110.5 148 38.5
BcaB06g29129 Brassica carinata HOM05D003761 ORTHO05D004412 2.1e-22 110.2 157 38.2
BolC7t43669H Brassica oleracea HOM05D003761 ORTHO05D004412 2.1e-22 110.2 150 38.7
AL7G37500 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 3.6e-22 109.4 148 38.5
Sp4g22430 Schrenkiella parvula HOM05D003761 ORTHO05D004412 3.6e-22 109.4 157 36.9
BcaC02g07354 Brassica carinata HOM05D003761 ORTHO05D004412 4.8e-22 109.0 157 37.6
BcaC09g50449 Brassica carinata HOM05D003761 ORTHO05D004412 6.2e-22 108.6 182 36.3
A04p30050 Brassica napus HOM05D003761 ORTHO05D004412 6.2e-22 108.6 157 37.6
C01p25300 Brassica napus HOM05D003761 ORTHO05D004412 6.2e-22 108.6 182 36.3
BolC1t02480H Brassica oleracea HOM05D003761 ORTHO05D004412 6.2e-22 108.6 182 36.3
HanXRQChr15g0470241 Helianthus annuus HOM05D003761 ORTHO05D004412 6.2e-22 108.6 150 42.0
BcaNung03474 Brassica carinata HOM05D003761 ORTHO05D004412 1.1e-21 107.8 142 40.1
BraA04t18501Z Brassica rapa HOM05D003761 ORTHO05D004412 1.1e-21 107.8 157 37.6
Carub.0007s2420 Capsella rubella HOM05D003761 ORTHO05D004412 1.1e-21 107.8 145 38.6
Oeu025400.1 Olea europaea HOM05D003761 ORTHO05D004412 1.8e-21 107.1 151 40.4
CARHR135090 Cardamine hirsuta HOM05D003761 ORTHO05D004412 3.1e-21 106.3 153 37.9
Thhalv10026465m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 3.1e-21 106.3 150 37.3
AL4G37770 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 4.0e-21 105.9 146 38.4
CARHR223820 Cardamine hirsuta HOM05D003761 ORTHO05D004412 4.0e-21 105.9 148 37.8
Os10g0208600 Oryza sativa ssp. japonica HOM05D003761 ORTHO05D004412 4.0e-21 105.9 154 40.9
Sp7g16980 Schrenkiella parvula HOM05D003761 ORTHO05D004412 4.0e-21 105.9 150 38.7
BraA01t01941Z Brassica rapa HOM05D003761 ORTHO05D004412 6.9e-21 105.1 151 39.7
AT2G40113 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 9.0e-21 104.8 161 37.3
unitig_52.g17560 Utricularia gibba HOM05D003761 ORTHO05D004412 1.5e-20 104.0 212 32.1
BcaNung00112 Brassica carinata HOM05D003761 ORTHO05D004412 4.5e-20 102.4 139 38.1
BcaC06g34236 Brassica carinata HOM05D003761 ORTHO05D004412 5.8e-20 102.1 158 34.8
THA.LOC104798379 Tarenaya hassleriana HOM05D003761 ORTHO05D004412 2.2e-19 100.1 142 39.4
Os10g0206500 Oryza sativa ssp. japonica HOM05D003761 ORTHO05D004412 3.8e-19 99.4 168 36.9
Sopen11g007440 Solanum pennellii HOM05D003761 ORTHO05D004412 6.4e-19 98.6 165 40.0
Solyc11g012705.2 Solanum lycopersicum HOM05D003761 ORTHO05D004412 8.4e-19 98.2 165 40.0
ATR0827G170 Amborella trichopoda HOM05D003761 ORTHO05D004412 1.4e-18 97.4 127 42.5
PGSC0003DMG400013298 Solanum tuberosum HOM05D003761 ORTHO05D004412 1.4e-18 97.4 166 39.8
Peaxi162Scf00442g00073 Petunia axillaris HOM05D003761 ORTHO05D004412 3.2e-18 96.3 163 38.0
Zm00001eb050510 Zea mays HOM05D003761 ORTHO05D004412 1.1e-15 87.8 168 35.7
BolC9t55850H Brassica oleracea HOM05D003761 ORTHO05D004412 3.3e-15 86.3 93 41.9
CAN.G1156.14 Capsicum annuum HOM05D003761 ORTHO05D004412 3.3e-15 86.3 167 37.1
C04p67800 Brassica napus HOM05D003761 ORTHO05D004412 5.8e-12 75.5 90 40.0
SEGI_00399 Sequoiadendron giganteum HOM05D003328 ORTHO05D003722 1.8e-08 63.9 136 28.7
SEGI_28043 Sequoiadendron giganteum HOM05D003761 ORTHO05D004412 3.3e-07 59.7 137 29.9


User provided reference genes

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