Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G313700 Prunus persica HOM05D006396 ORTHO05D008172 1.0e-149 533.5 294 100.0
FAN14G4577 Fragaria x ananassa HOM05D006396 ORTHO05D008172 1.3e-99 367.1 295 70.5
FAN09G2227 Fragaria x ananassa HOM05D006396 ORTHO05D008172 4.9e-99 365.2 295 70.2
FAN05G4097 Fragaria x ananassa HOM05D006396 ORTHO05D008172 8.3e-99 364.4 295 69.8
MD09G1002500 Malus domestica HOM05D006396 ORTHO05D008172 1.4e-98 363.6 300 73.7
RcHm_v2.0_Chr2g0176531 Rosa chinensis HOM05D006396 ORTHO05D008172 2.0e-97 359.8 294 70.7
MD17G1006700 Malus domestica HOM05D006396 ORTHO05D008172 1.6e-94 350.1 296 74.7
Ciclev10016116m.g Citrus clementina HOM05D006396 ORTHO05D008172 2.9e-91 339.3 299 67.2
Gohir.D11G068100 Gossypium hirsutum HOM05D006396 ORTHO05D008172 1.4e-90 337.0 296 65.5
Gorai.007G072900 Gossypium raimondii HOM05D006396 ORTHO05D008172 1.4e-90 337.0 296 65.5
Manes.11G076200 Manihot esculenta HOM05D006396 ORTHO05D008172 7.0e-90 334.7 282 68.1
QL02p069325 Quercus lobata HOM05D006396 ORTHO05D008172 9.2e-90 334.3 298 66.8
COL.COLO4_13379 Corchorus olitorius HOM05D006396 ORTHO05D008172 2.0e-89 333.2 296 64.9
Dinv33276 Davidia involucrata HOM05D006396 ORTHO05D008172 2.0e-89 333.2 278 68.3
Atru.chr6.2699 Acer truncatum HOM05D006396 ORTHO05D008172 2.7e-89 332.8 296 66.2
Rhsim08G0038900 Rhododendron simsii HOM05D006396 ORTHO05D008172 2.7e-89 332.8 296 65.2
Cfa007142 Carpinus fangiana HOM05D006396 ORTHO05D008172 6.0e-89 331.6 195 88.2
Haze_14981 Corylus avellana HOM05D006396 ORTHO05D008172 1.3e-88 330.5 283 72.8
Thecc.04G048300 Theobroma cacao HOM05D006396 ORTHO05D008172 1.3e-88 330.5 296 64.5
Glyma.16G147700 Glycine max HOM05D006396 ORTHO05D008172 1.7e-88 330.1 194 88.1
vmacro18382 Vaccinium macrocarpon HOM05D006396 ORTHO05D008172 1.7e-88 330.1 257 70.4
Cpa.g.sc70.60 Carica papaya HOM05D006396 ORTHO05D008172 3.0e-88 329.3 257 73.5
Gohir.A11G063800 Gossypium hirsutum HOM05D006396 ORTHO05D008172 3.0e-88 329.3 282 67.0
Nn4g22123 Nelumbo nucifera HOM05D006396 ORTHO05D008172 3.9e-88 328.9 226 77.9
VMungo0464G1242 Vigna mungo HOM05D006396 ORTHO05D008172 3.9e-88 328.9 282 67.7
arahy.Tifrunner.gnm1.ann1.P0PZ58 Arachis hypogaea HOM05D006396 ORTHO05D008172 6.6e-88 328.2 194 88.1
PGR142G1470 Punica granatum HOM05D006396 ORTHO05D008172 6.6e-88 328.2 295 64.1
Sabra16G0314900 Salix brachista HOM05D006396 ORTHO05D008172 8.6e-88 327.8 300 66.0
Hund12907 Selenicereus undatus HOM05D006396 ORTHO05D008172 8.6e-88 327.8 194 87.1
SGA_v2.0_scaffold174G39282 Striga asiatica HOM05D006396 ORTHO05D008172 8.6e-88 327.8 196 86.7
arahy.Tifrunner.gnm1.ann1.Q1FZEB Arachis hypogaea HOM05D006396 ORTHO05D008172 1.5e-87 327.0 194 87.1
Sabra16G0313400 Salix brachista HOM05D006396 ORTHO05D008172 1.5e-87 327.0 300 65.7
GSVIVG01032980001 Vitis vinifera HOM05D006396 ORTHO05D008172 1.9e-87 326.6 294 67.3
Phvul.004G069700 Phaseolus vulgaris HOM05D006396 ORTHO05D008172 3.3e-87 325.9 223 78.9
CiPaw.04G001100 Carya illinoinensis HOM05D006396 ORTHO05D008172 4.3e-87 325.5 195 86.2
Eucgr.I01598 Eucalyptus grandis HOM05D006396 ORTHO05D008172 4.3e-87 325.5 296 66.2
Potri.001G463200 Populus trichocarpa HOM05D006396 ORTHO05D008172 4.3e-87 325.5 295 65.8
Hma1.2p1_1389F.1_g279970 Hydrangea macrophylla HOM05D006396 ORTHO05D008172 1.2e-86 323.9 187 87.7
Ah.03g136630 Amaranthus hybridus HOM05D006396 ORTHO05D008172 6.2e-86 321.6 276 65.2
TAR622G0848 Trochodendron aralioides HOM05D006396 ORTHO05D008172 1.1e-85 320.9 192 86.5
CANSAT21G0889 Cannabis sativa HOM05D006396 ORTHO05D008172 5.2e-85 318.5 288 64.6
Lsat_1_v5_gn_3_104821 Lactuca sativa HOM05D006396 ORTHO05D008172 5.2e-85 318.5 266 67.7
Lalb_Chr14g0364101 Lupinus albus HOM05D006396 ORTHO05D008172 5.2e-85 318.5 279 66.3
MSTRG.15316 Avicennia marina HOM05D006396 ORTHO05D008172 6.8e-85 318.2 236 76.3
Lj1g0009632 Lotus japonicus HOM05D006396 ORTHO05D008172 6.8e-85 318.2 295 64.7
Nitab4.5_0000139g0180 Nicotiana tabacum HOM05D006396 ORTHO05D008172 6.8e-85 318.2 199 83.9
SalBow1G8636 Salvia bowleyana HOM05D006396 ORTHO05D008172 6.8e-85 318.2 236 74.6
ATR0582G370 Amborella trichopoda HOM05D006396 ORTHO05D008172 8.9e-85 317.8 193 83.9
Lj7A617G76 Lonicera japonica HOM05D006396 ORTHO05D008172 1.2e-84 317.4 188 88.3
CAN.G1108.4 Capsicum annuum HOM05D006396 ORTHO05D008172 1.5e-84 317.0 199 83.4
TWI39G0493 Tripterygium wilfordii HOM05D006396 ORTHO05D008172 2.6e-84 316.2 198 84.8
Solyc02g005210.3 Solanum lycopersicum HOM05D006396 ORTHO05D008172 3.4e-84 315.8 195 85.1
Sed0011277 Sechium edule HOM05D006396 ORTHO05D008172 5.8e-84 315.1 196 82.7
ClCG01G007850 Citrullus lanatus HOM05D006396 ORTHO05D008172 7.5e-84 314.7 192 83.9
Glyma.02G066600 Glycine max HOM05D006396 ORTHO05D008172 7.5e-84 314.7 188 87.2
Nitab4.5_0005452g0030 Nicotiana tabacum HOM05D006396 ORTHO05D008172 9.8e-84 314.3 199 82.9
Sc03g0005260 Simmondsia chinensis HOM05D006396 ORTHO05D008172 9.8e-84 314.3 187 85.6
Oeu041974.1 Olea europaea HOM05D006396 ORTHO05D008172 1.3e-83 313.9 255 68.2
HanXRQChr17g0550901 Helianthus annuus HOM05D006396 ORTHO05D008172 1.7e-83 313.5 230 73.9
Sopen02g001100 Solanum pennellii HOM05D006396 ORTHO05D008172 1.7e-83 313.5 197 82.7
ECA246G0184 Erigeron canadensis HOM05D006396 ORTHO05D008172 2.2e-83 313.2 197 84.3
PGSC0003DMG400014532 Solanum tuberosum HOM05D006396 ORTHO05D008172 2.2e-83 313.2 195 83.6
Actinidia37717 Actinidia chinensis HOM05D006396 ORTHO05D008172 4.9e-83 312.0 276 63.8
CSS0007606 Camellia sinensis var. sinensis HOM05D006396 ORTHO05D008172 4.9e-83 312.0 195 83.6
AUR62037820 Chenopodium quinoa HOM05D006396 ORTHO05D008172 4.9e-83 312.0 197 81.7
Medtr7g084160 Medicago truncatula HOM05D006396 ORTHO05D008172 6.4e-83 311.6 188 83.0
Aqoxy5G03069 Aquilegia oxysepala HOM05D006396 ORTHO05D008172 8.3e-83 311.2 192 83.9
AUR62017434 Chenopodium quinoa HOM05D006396 ORTHO05D008172 1.4e-82 310.5 276 64.1
Ca_08202_v3 Cicer arietinum L. HOM05D006396 ORTHO05D008172 1.4e-82 310.5 253 67.2
DCAR_014466 Daucus carota HOM05D006396 ORTHO05D008172 1.4e-82 310.5 197 81.2
CsaV3_5G024930 Cucumis sativus L. HOM05D006396 ORTHO05D008172 1.9e-82 310.1 192 81.2
unitig_32.g11883 Utricularia gibba HOM05D006396 ORTHO05D008172 7.1e-82 308.1 191 82.7
THA.LOC104825656 Tarenaya hassleriana HOM05D006396 ORTHO05D008172 2.1e-81 306.6 195 80.5
PSO017G3463 Papaver somniferum HOM05D006396 ORTHO05D008172 3.5e-81 305.8 282 62.4
Psat0s4148g0040 Pisum sativum HOM05D006396 ORTHO05D008172 1.0e-80 304.3 188 82.4
PSO478G0237 Papaver somniferum HOM05D006396 ORTHO05D008172 2.3e-80 303.1 282 62.1
Cc07_g01330 Coffea canephora HOM05D006396 ORTHO05D008172 3.0e-80 302.8 203 78.3
TPR.G15411 Trifolium pratense HOM05D006396 ORTHO05D008172 3.0e-80 302.8 293 60.4
CARHR147730 Cardamine hirsuta HOM05D006396 ORTHO05D008172 3.9e-80 302.4 264 66.7
THA.LOC104805299 Tarenaya hassleriana HOM05D006396 ORTHO05D008172 3.9e-80 302.4 195 81.0
C02p53250 Brassica napus HOM05D006396 ORTHO05D008172 6.6e-80 301.6 196 81.1
Aa31LG2G5850 Aethionema arabicum HOM05D006396 ORTHO05D008172 8.6e-80 301.2 195 79.0
AL5G15550 Arabidopsis lyrata HOM05D006396 ORTHO05D008172 1.1e-79 300.8 266 63.9
BolC7t44094H Brassica oleracea HOM05D006396 ORTHO05D008172 1.5e-79 300.4 198 79.3
Sp2g15830 Schrenkiella parvula HOM05D006396 ORTHO05D008172 1.5e-79 300.4 198 79.3
Thhalv10004768m.g Eutrema salsugineum HOM05D006396 ORTHO05D008172 1.9e-79 300.1 198 79.3
A06p41790 Brassica napus HOM05D006396 ORTHO05D008172 4.3e-79 298.9 198 78.8
BcaC06g31047 Brassica carinata HOM05D006396 ORTHO05D008172 5.6e-79 298.5 197 78.7
BolC2t11397H Brassica oleracea HOM05D006396 ORTHO05D008172 5.6e-79 298.5 196 80.1
BcaNung07107 Brassica carinata HOM05D006396 ORTHO05D008172 7.3e-79 298.1 198 78.8
C07p35740 Brassica napus HOM05D006396 ORTHO05D008172 7.3e-79 298.1 198 78.8
BraA02t08477Z Brassica rapa HOM05D006396 ORTHO05D008172 2.1e-78 296.6 187 83.4
AT3G26710 Arabidopsis thaliana HOM05D006396 ORTHO05D008172 2.8e-78 296.2 266 62.8
HPP92_009800 Vanilla planifolia HOM05D006396 ORTHO05D008172 2.8e-78 296.2 192 80.2
Carub.0005s0471 Capsella rubella HOM05D006396 ORTHO05D008172 4.7e-78 295.4 266 62.8
Os11g0526200 Oryza sativa ssp. japonica HOM05D006396 ORTHO05D008172 1.8e-77 293.5 195 77.4
Zm00001eb198120 Zea mays HOM05D006396 ORTHO05D008172 1.8e-77 293.5 192 78.1
CDE05G2379 Ceratophyllum demersum HOM05D006396 ORTHO05D008172 3.1e-77 292.7 243 67.1
EL10Ac6g13409 Beta vulgaris HOM05D006396 ORTHO05D008172 9.6e-71 271.2 198 73.7
CSS0000498 Camellia sinensis var. sinensis HOM05D006396 ORTHO05D008172 1.1e-69 267.7 193 75.6
Mapoly0054s0013 Marchantia polymorpha HOM05D006396 ORTHO05D008172 1.8e-69 266.9 195 67.7
Migut.L00475 Erythranthe guttata HOM05D006396 ORTHO05D008172 1.5e-68 263.8 192 74.0
FvH4_6g54310 Fragaria vesca HOM05D006396 ORTHO05D008172 4.9e-67 258.8 232 65.1
SMO146G0400 Selaginella moellendorffii HOM05D006396 ORTHO05D008172 2.4e-66 256.5 189 66.7
BcaC03g17380 Brassica carinata HOM05D006396 ORTHO05D008172 6.6e-64 248.4 154 83.1
CBR_g29738 Chara braunii HOM05D006396 ORTHO05D008172 1.9e-63 246.9 203 63.1
Pp3c2_10260 Physcomitrium patens HOM05D006396 ORTHO05D008172 1.7e-59 233.8 199 59.8
MELO3C005101.2 Cucumis melo HOM05D006396 ORTHO05D008172 6.2e-54 215.3 129 83.7
CDE05G2841 Ceratophyllum demersum HOM05D006396 ORTHO05D008172 2.0e-52 210.3 128 82.8
Duzib147G0670 Durio zibethinus HOM05D006396 ORTHO05D008172 2.0e-52 210.3 255 52.5
PRCOL_00002489 Prasinoderma coloniale HOM05D006396 ORTHO05D008172 1.1e-47 194.5 198 52.5
AagrBONN_evm.TU.Sc2ySwM_368.425 Anthoceros agrestis HOM05D006396 ORTHO05D008172 6.2e-46 188.7 137 70.8
Peaxi162Scf00818g00123 Petunia axillaris HOM05D006396 ORTHO05D008172 8.1e-46 188.3 111 86.5
SGA_v2.0_scaffold174G39277 Striga asiatica HOM05D006396 ORTHO05D008172 6.9e-45 185.3 180 61.1
MCO04G060 Micromonas commoda HOM05D006396 ORTHO05D008172 1.5e-44 184.1 186 51.6
SEGI_35956 Sequoiadendron giganteum HOM05D006396 ORTHO05D008172 9.3e-42 174.9 111 75.7
FAN02G1480 Fragaria x ananassa HOM05D006396 ORTHO05D008172 4.1e-37 159.5 149 62.4
Cre16.g662150 Chlamydomonas reinhardtii HOM05D006396 ORTHO05D008172 5.0e-35 152.5 189 45.5
SEGI_37491 Sequoiadendron giganteum HOM05D006396 ORTHO05D008172 1.1e-23 114.8 83 72.3
BolC2t09342H Brassica oleracea HOM05D006396 ORTHO05D000401 1.4e-16 91.3 71 69.0
MD04G1090800 Malus domestica HOM05D006396 ORTHO05D008172 2.6e-15 87.0 50 82.0
BolC1t02127H Brassica oleracea HOM05D000589 ORTHO05D000401 1.2e-12 78.2 91 53.8
A02p34690 Brassica napus HOM05D006396 ORTHO05D008172 3.0e-08 63.5 44 70.5
C01p21980 Brassica napus HOM05D004448 ORTHO05D015948 1.3e-06 58.2 63 54.0
Psat7g159680 Pisum sativum HOM05D006396 ORTHO05D008172 1.3e-06 58.2 35 71.4


User provided reference genes

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