Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G298500 Prunus persica HOM05D004407 ORTHO05D005074 6.0e-71 270.8 141 100.0
Prupe.3G298600 Prunus persica HOM05D004407 ORTHO05D005074 8.1e-52 207.2 145 78.6
MD17G1019100 Malus domestica HOM05D004407 ORTHO05D005074 1.3e-44 183.3 146 65.1
MD09G1018600 Malus domestica HOM05D004407 ORTHO05D005074 2.1e-44 182.6 145 64.8
FvH4_6g52330 Fragaria vesca HOM05D004407 ORTHO05D005074 6.5e-41 171.0 141 62.4
FAN05G1079 Fragaria x ananassa HOM05D004407 ORTHO05D005074 3.2e-40 168.7 128 66.4
TWI36G1179 Tripterygium wilfordii HOM05D004407 ORTHO05D005074 1.2e-39 166.8 128 67.2
CSS0009144 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 3.5e-39 165.2 129 62.0
CANSAT64G2558 Cannabis sativa HOM05D004407 ORTHO05D005074 3.9e-38 161.8 130 63.1
QL02p073303 Quercus lobata HOM05D004407 ORTHO05D005074 1.1e-37 160.2 144 62.5
QL02p073308 Quercus lobata HOM05D004407 ORTHO05D005074 1.1e-37 160.2 144 62.5
Duzib187G1586 Durio zibethinus HOM05D004407 ORTHO05D005074 3.3e-37 158.7 128 61.7
Actinidia05950 Actinidia chinensis HOM05D004407 ORTHO05D005074 7.4e-37 157.5 124 62.9
Manes.15G155400 Manihot esculenta HOM05D004407 ORTHO05D005074 2.8e-36 155.6 127 61.4
Nn4g22470 Nelumbo nucifera HOM05D004407 ORTHO05D005074 2.8e-36 155.6 124 60.5
Thecc.04G026300 Theobroma cacao HOM05D004407 ORTHO05D005074 8.2e-36 154.1 129 61.2
Haze_14799 Corylus avellana HOM05D002760 ORTHO05D003169 2.4e-35 152.5 129 58.9
Potri.001G338100 Populus trichocarpa HOM05D004407 ORTHO05D005074 3.1e-35 152.1 114 64.0
PGR083G0262 Punica granatum HOM05D004407 ORTHO05D005074 3.1e-35 152.1 129 59.7
Nitab4.5_0001863g0220 Nicotiana tabacum HOM05D004407 ORTHO05D005074 6.9e-35 151.0 127 59.8
Nn3g16588 Nelumbo nucifera HOM05D004407 ORTHO05D005074 9.0e-35 150.6 149 52.3
TAR622G1038 Trochodendron aralioides HOM05D004407 ORTHO05D005074 9.0e-35 150.6 129 59.7
Rhsim10G0012400 Rhododendron simsii HOM05D004407 ORTHO05D005074 1.2e-34 150.2 122 61.5
Nitab4.5_0001031g0160 Nicotiana tabacum HOM05D004407 ORTHO05D005074 1.5e-34 149.8 127 59.1
Ciclev10017684m.g Citrus clementina HOM05D004407 ORTHO05D005074 2.0e-34 149.4 130 56.2
Eucgr.J02274 Eucalyptus grandis HOM05D004407 ORTHO05D005074 2.6e-34 149.1 128 57.8
Gorai.012G091100 Gossypium raimondii HOM05D004407 ORTHO05D005074 2.6e-34 149.1 131 58.0
Gohir.A09G032000 Gossypium hirsutum HOM05D004407 ORTHO05D005074 3.4e-34 148.7 128 59.4
RcHm_v2.0_Chr2g0173921 Rosa chinensis HOM05D004407 ORTHO05D005074 3.4e-34 148.7 127 60.6
Potri.001G336200 Populus trichocarpa HOM05D004407 ORTHO05D005074 1.0e-33 147.1 145 55.9
Cpa.g.sc130.51 Carica papaya HOM05D004407 ORTHO05D005074 1.7e-33 146.4 130 58.5
Gohir.D04G080420 Gossypium hirsutum HOM05D004407 ORTHO05D005074 1.7e-33 146.4 131 57.3
THA.LOC104825308 Tarenaya hassleriana HOM05D004407 ORTHO05D005074 1.7e-33 146.4 134 58.2
Solyc02g093710.1 Solanum lycopersicum HOM05D004407 ORTHO05D005074 2.2e-33 146.0 122 62.3
THA.LOC104805351 Tarenaya hassleriana HOM05D004407 ORTHO05D005074 2.9e-33 145.6 127 59.8
Gorai.006G037000 Gossypium raimondii HOM05D004407 ORTHO05D005074 3.8e-33 145.2 129 57.4
CAN.G473.50 Capsicum annuum HOM05D004407 ORTHO05D005074 5.0e-33 144.8 140 55.0
Sopen02g038350 Solanum pennellii HOM05D004407 ORTHO05D005074 6.5e-33 144.4 122 61.5
FAN14G0353 Fragaria x ananassa HOM05D004407 ORTHO05D005074 1.1e-32 143.7 92 72.8
Ah.06g182110 Amaranthus hybridus HOM05D004407 ORTHO05D005074 1.4e-32 143.3 127 56.7
Aqoxy3G01382 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 1.9e-32 142.9 127 55.9
Glyma.02G190900 Glycine max HOM05D004407 ORTHO05D005074 1.9e-32 142.9 118 59.3
PGSC0003DMG400012626 Solanum tuberosum HOM05D004407 ORTHO05D005074 1.9e-32 142.9 122 61.5
MBI11_g29154_MAGBIO Magnolia biondii HOM05D004407 ORTHO05D005074 3.2e-32 142.1 128 53.1
CiPaw.03G049400 Carya illinoinensis HOM05D004407 ORTHO05D005074 4.2e-32 141.7 129 56.6
Sabra16G0217100 Salix brachista HOM05D004407 ORTHO05D005074 7.2e-32 141.0 132 57.6
Oeu054661.1 Olea europaea HOM05D004407 ORTHO05D005074 1.6e-31 139.8 120 60.0
CANSAT64G1834 Cannabis sativa HOM05D004407 ORTHO05D005074 2.7e-31 139.0 111 61.3
ClCG09G019590 Citrullus lanatus HOM05D004407 ORTHO05D005074 6.1e-31 137.9 101 64.4
VMungo1383G1696 Vigna mungo HOM05D004407 ORTHO05D005074 7.9e-31 137.5 115 60.9
Thecc.04G026400 Theobroma cacao HOM05D004407 ORTHO05D005074 1.3e-30 136.7 129 52.7
Phvul.008G156900 Phaseolus vulgaris HOM05D004407 ORTHO05D005074 6.7e-30 134.4 115 59.1
Sed0009704 Sechium edule HOM05D004407 ORTHO05D005074 6.7e-30 134.4 99 63.6
DCAR_015072 Daucus carota HOM05D004407 ORTHO05D005074 8.7e-30 134.0 132 53.0
Carub.0007s3479 Capsella rubella HOM05D004407 ORTHO05D005074 1.1e-29 133.7 131 55.7
PSO832G4071 Papaver somniferum HOM05D004407 ORTHO05D005074 1.1e-29 133.7 129 55.8
Ca_03872_v3 Cicer arietinum L. HOM05D004407 ORTHO05D005074 1.5e-29 133.3 118 59.3
Cc07_g00320 Coffea canephora HOM05D004407 ORTHO05D005074 1.5e-29 133.3 130 54.6
Duzib264G0535 Durio zibethinus HOM05D004407 ORTHO05D005074 1.5e-29 133.3 122 54.1
BolC4t26352H Brassica oleracea HOM05D004407 ORTHO05D005074 1.9e-29 132.9 130 54.6
Sabra16G0218800 Salix brachista HOM05D000111 ORTHO05D000134 1.9e-29 132.9 113 59.3
CARHR213820 Cardamine hirsuta HOM05D004407 ORTHO05D005074 2.5e-29 132.5 130 54.6
Aa31LG2G5400 Aethionema arabicum HOM05D004407 ORTHO05D005074 3.3e-29 132.1 129 53.5
A04p13730 Brassica napus HOM05D004407 ORTHO05D005074 3.3e-29 132.1 147 51.7
DCAR_015074 Daucus carota HOM05D004407 ORTHO05D005074 3.3e-29 132.1 125 56.0
PSO063G0264 Papaver somniferum HOM05D004407 ORTHO05D005074 3.3e-29 132.1 129 55.0
TAR625G1142 Trochodendron aralioides HOM05D004407 ORTHO05D005074 3.3e-29 132.1 129 55.0
EL10Ac4g07679 Beta vulgaris HOM05D004407 ORTHO05D005074 4.3e-29 131.7 121 56.2
C04p47510 Brassica napus HOM05D004407 ORTHO05D005074 5.7e-29 131.3 130 53.8
BraA04t17032Z Brassica rapa HOM05D004407 ORTHO05D005074 5.7e-29 131.3 130 53.8
Thhalv10028148m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 5.7e-29 131.3 130 53.8
CsaV3_5G026800 Cucumis sativus L. HOM05D004407 ORTHO05D005074 7.4e-29 131.0 86 69.8
Aa31LG9G940 Aethionema arabicum HOM05D004407 ORTHO05D005074 1.3e-28 130.2 109 60.6
Sp7g01180 Schrenkiella parvula HOM05D004407 ORTHO05D005074 1.3e-28 130.2 129 55.0
Sed0027888 Sechium edule HOM05D004407 ORTHO05D005074 1.3e-28 130.2 130 53.1
MSTRG.24058 Avicennia marina HOM05D004407 ORTHO05D005074 1.6e-28 129.8 124 54.0
PSO017G7028 Papaver somniferum HOM05D004407 ORTHO05D005074 1.6e-28 129.8 149 49.7
Psat0s1368g0080 Pisum sativum HOM05D004407 ORTHO05D005074 1.6e-28 129.8 118 58.5
Sed0005342 Sechium edule HOM05D004407 ORTHO05D005074 3.7e-28 128.6 99 60.6
MELO3C021614.2 Cucumis melo HOM05D004407 ORTHO05D005074 4.8e-28 128.3 100 60.0
GSVIVG01003970001 Vitis vinifera HOM05D004407 ORTHO05D005074 8.2e-28 127.5 97 60.8
Lsat_1_v5_gn_2_93521 Lactuca sativa HOM05D004407 ORTHO05D005074 1.8e-27 126.3 115 57.4
COL.COLO4_29257 Corchorus olitorius HOM05D004407 ORTHO05D005074 3.1e-27 125.6 87 66.7
PSO407G0367 Papaver somniferum HOM05D004407 ORTHO05D005074 4.1e-27 125.2 129 52.7
Rhsim10G0012300 Rhododendron simsii HOM05D004407 ORTHO05D005074 4.1e-27 125.2 113 57.5
TPR.G1105 Trifolium pratense HOM05D004407 ORTHO05D005074 6.9e-27 124.4 138 48.6
TPR.G1219 Trifolium pratense HOM05D004407 ORTHO05D005074 1.2e-26 123.6 138 47.8
Migut.K01432 Erythranthe guttata HOM05D004407 ORTHO05D005074 2.6e-26 122.5 111 53.2
Medtr1g051195 Medicago truncatula HOM05D004407 ORTHO05D005074 3.4e-26 122.1 118 54.2
Gohir.A05G342300 Gossypium hirsutum HOM05D004407 ORTHO05D005074 4.5e-26 121.7 120 54.2
Hma1.2p1_0818F.1_g223550 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 1.7e-25 119.8 85 64.7
Hma1.2p1_1484F.1_g286420 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 1.7e-25 119.8 85 65.9
TAR374G1728 Trochodendron aralioides HOM05D004407 ORTHO05D005074 1.7e-25 119.8 109 55.0
Hma1.2p1_0818F.1_g223510 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 2.2e-25 119.4 102 58.8
Aqoxy4G01774 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 2.9e-25 119.0 106 54.7
Aqoxy5G03597 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 2.9e-25 119.0 106 54.7
Hma1.2p1_1484F.1_g286410 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 6.5e-25 117.9 90 62.2
HanXRQChr09g0255761 Helianthus annuus HOM05D004407 ORTHO05D005074 1.1e-24 117.1 119 54.6
Hma1.2p1_0279F.1_g112130 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 1.1e-24 117.1 108 58.3
Hma1.2p1_0818F.1_g223530 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 1.4e-24 116.7 87 63.2
Hma1.2p1_1484F.1_g286386 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 1.4e-24 116.7 87 63.2
PGR083G1149 Punica granatum HOM05D004407 ORTHO05D005074 1.4e-24 116.7 129 46.5
Dinv25704 Davidia involucrata HOM05D004407 ORTHO05D005074 5.5e-24 114.8 118 53.4
Hma1.2p1_1484F.1_g286390 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 5.5e-24 114.8 85 62.4
Sc03g0006940 Simmondsia chinensis HOM05D004407 ORTHO05D005074 7.2e-24 114.4 129 45.7
Sc03g0006970 Simmondsia chinensis HOM05D004407 ORTHO05D005074 7.2e-24 114.4 129 45.7
ECA238G3732 Erigeron canadensis HOM05D004407 ORTHO05D005074 2.1e-23 112.8 116 53.4
PGR083G0848 Punica granatum HOM05D004407 ORTHO05D005074 3.6e-23 112.1 129 45.7
ECA238G3518 Erigeron canadensis HOM05D004407 ORTHO05D005074 4.6e-23 111.7 116 53.4
Hma1.2p1_0818F.1_g223560 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 1.4e-22 110.2 87 60.9
AL7G49050 Arabidopsis lyrata HOM05D004407 ORTHO05D005074 3.0e-22 109.0 130 47.7
AT5G40690 Arabidopsis thaliana HOM05D004407 ORTHO05D005074 6.7e-22 107.8 129 47.3
BcaB07g31285 Brassica carinata HOM05D004407 ORTHO05D005074 1.1e-21 107.1 119 46.2
Duzib187G1582 Durio zibethinus HOM05D004407 ORTHO05D005074 2.6e-21 105.9 130 43.1
SGA_v2.0_scaffold47G17536 Striga asiatica HOM05D004407 ORTHO05D005074 3.3e-21 105.5 90 55.6
AUR62020325 Chenopodium quinoa HOM05D004407 ORTHO05D005074 4.4e-21 105.1 128 45.3
Gohir.A11G065600 Gossypium hirsutum HOM05D004407 ORTHO05D005074 2.2e-20 102.8 118 44.1
PGSC0003DMG400006921 Solanum tuberosum HOM05D004407 ORTHO05D005074 2.8e-20 102.4 129 46.5
Peaxi162Scf00420g00249 Petunia axillaris HOM05D004407 ORTHO05D005074 3.7e-20 102.1 116 50.9
Sopen02g017070 Solanum pennellii HOM05D000413 ORTHO05D005074 8.2e-20 100.9 130 45.4
BcaC04g22350 Brassica carinata HOM05D004407 ORTHO05D005074 1.4e-19 100.1 84 56.0
C09p20260 Brassica napus HOM05D006758 ORTHO05D008326 1.4e-19 100.1 84 56.0
BolC9t54931H Brassica oleracea HOM05D006758 ORTHO05D008326 1.4e-19 100.1 84 56.0
C04p02920 Brassica napus HOM05D004407 ORTHO05D005074 2.4e-19 99.4 113 46.0
BolC4t21933H Brassica oleracea HOM05D004407 ORTHO05D005074 2.4e-19 99.4 113 46.0
CARHR025870 Cardamine hirsuta HOM05D004407 ORTHO05D005074 2.4e-19 99.4 121 45.5
HanXRQChr14g0451031 Helianthus annuus HOM05D004407 ORTHO05D005074 2.4e-19 99.4 95 55.8
Migut.H00046 Erythranthe guttata HOM05D004407 ORTHO05D005074 3.1e-19 99.0 127 49.6
A09p16650 Brassica napus HOM05D006758 ORTHO05D008326 4.1e-19 98.6 84 53.6
BraA09t37304Z Brassica rapa HOM05D006758 ORTHO05D008326 4.1e-19 98.6 84 53.6
BcaB02g07933 Brassica carinata HOM05D004407 ORTHO05D005074 5.3e-19 98.2 127 45.7
C04p02950 Brassica napus HOM05D004407 ORTHO05D005074 5.9e-18 94.7 113 45.1
BolC4t21935H Brassica oleracea HOM05D004407 ORTHO05D005074 5.9e-18 94.7 113 45.1
Gohir.D11G069800 Gossypium hirsutum HOM05D004407 ORTHO05D005074 5.9e-18 94.7 117 41.9
Gorai.007G074900 Gossypium raimondii HOM05D004407 ORTHO05D005074 7.7e-18 94.4 117 41.9
A05p02450 Brassica napus HOM05D004407 ORTHO05D005074 1.0e-17 94.0 119 45.4
BraA05t19239Z Brassica rapa HOM05D004407 ORTHO05D005074 1.0e-17 94.0 119 45.4
BcaNung02832 Brassica carinata HOM05D004407 ORTHO05D005074 1.3e-17 93.6 119 45.4
Thhalv10028030m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 1.1e-16 90.5 123 43.1
BcaNung02830 Brassica carinata HOM05D004407 ORTHO05D005074 1.4e-16 90.1 113 44.2
C04p02940 Brassica napus HOM05D004407 ORTHO05D005074 1.9e-16 89.7 114 43.0
BolC4t21934H Brassica oleracea HOM05D004407 ORTHO05D005074 1.9e-16 89.7 114 43.0
A05p02490 Brassica napus HOM05D004407 ORTHO05D005074 2.5e-16 89.4 118 41.5
BraA05t19242Z Brassica rapa HOM05D004407 ORTHO05D005074 2.5e-16 89.4 118 41.5
A05p02480 Brassica napus HOM05D004407 ORTHO05D005074 3.2e-16 89.0 119 42.0
BraA05t19241Z Brassica rapa HOM05D004407 ORTHO05D005074 3.2e-16 89.0 119 42.0
A05p02470 Brassica napus HOM05D004407 ORTHO05D005074 4.2e-16 88.6 113 42.5
ECA232G1846 Erigeron canadensis HOM05D004407 ORTHO05D005074 7.2e-16 87.8 79 58.2
Thhalv10019315m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 2.7e-15 85.9 120 40.8
BraA05t19240Z Brassica rapa HOM05D004407 ORTHO05D005074 1.8e-14 83.2 113 40.7
unitig_747.g21864 Utricularia gibba HOM05D004407 ORTHO05D005074 5.2e-14 81.6 108 44.4
Sp4g23980 Schrenkiella parvula HOM05D004407 ORTHO05D005074 7.4e-13 77.8 121 39.7
Solyc02g067935.1 Solanum lycopersicum HOM05D004407 ORTHO05D005074 2.2e-12 76.3 76 50.0
BcaNung02831 Brassica carinata HOM05D004407 ORTHO05D005074 2.8e-12 75.9 102 44.1
HPP92_009916 Vanilla planifolia HOM05D004407 ORTHO05D005074 2.8e-12 75.9 90 40.0
SGA_v2.0_scaffold154G37145 Striga asiatica HOM05D002760 ORTHO05D003169 3.7e-12 75.5 46 69.6
HPP92_009915 Vanilla planifolia HOM05D004407 ORTHO05D005074 3.7e-12 75.5 84 42.9
AT2G41730 Arabidopsis thaliana HOM05D004407 ORTHO05D005074 8.2e-12 74.3 120 40.8
Lsat_1_v5_gn_4_184741 Lactuca sativa HOM05D004407 ORTHO05D005074 1.2e-10 70.5 114 43.0
AT5G24640 Arabidopsis thaliana HOM05D004407 ORTHO05D005074 2.6e-10 69.3 120 37.5
Nitab4.5_0000040g0600 Nicotiana tabacum HOM05D004407 ORTHO05D005074 2.9e-09 65.9 117 38.5
SEGI_17639 Sequoiadendron giganteum HOM05D050174 ORTHO05D005074 2.9e-09 65.9 103 39.8
CANSAT64G1789 Cannabis sativa HOM05D004407 ORTHO05D005074 3.8e-09 65.5 110 40.9
AL4G40040 Arabidopsis lyrata HOM05D004407 ORTHO05D005074 6.5e-09 64.7 113 35.4
Medtr4g061650 Medicago truncatula HOM05D004407 ORTHO05D005074 7.2e-08 61.2 53 56.6
Nitab4.5_0005414g0060 Nicotiana tabacum HOM05D004407 ORTHO05D005074 8.0e-07 57.8 117 35.0
Mapoly0297s0001 Marchantia polymorpha HOM05D034947 ORTHO05D036670 5.2e-06 55.1 54 53.7


User provided reference genes

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