Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G297400 Prunus persica HOM05D005105 ORTHO05D006244 6.1e-285 983.4 475 100.0
Prupe.3G310100 Prunus persica HOM05D005105 ORTHO05D006244 1.3e-215 753.1 544 73.5
MD09G1007000 Malus domestica HOM05D005105 ORTHO05D006244 7.4e-190 667.5 565 63.5
FAN14G3030 Fragaria x ananassa HOM05D005105 ORTHO05D006244 1.3e-173 613.6 562 59.4
FAN02G1943 Fragaria x ananassa HOM05D005105 ORTHO05D006244 2.2e-170 602.8 562 58.7
FAN09G0463 Fragaria x ananassa HOM05D005105 ORTHO05D006244 3.8e-170 602.1 562 58.4
RcHm_v2.0_Chr2g0176111 Rosa chinensis HOM05D005105 ORTHO05D006244 9.4e-169 597.4 567 58.0
FAN05G2765 Fragaria x ananassa HOM05D005105 ORTHO05D006244 5.3e-164 581.6 580 56.7
QL02p070577 Quercus lobata HOM05D005105 ORTHO05D006244 2.5e-153 546.2 564 53.9
CANSAT21G1015 Cannabis sativa HOM05D005105 ORTHO05D006244 2.3e-151 539.7 545 54.1
Duzib147G0369 Durio zibethinus HOM05D005105 ORTHO05D006244 1.6e-147 526.9 550 52.7
TWI60G0613 Tripterygium wilfordii HOM05D005105 ORTHO05D006244 2.9e-146 522.7 544 53.3
TAR629G0447 Trochodendron aralioides HOM05D005105 ORTHO05D006244 8.6e-146 521.2 547 53.2
Thecc.04G041900 Theobroma cacao HOM05D005105 ORTHO05D006244 1.1e-145 520.8 553 51.7
Gorai.006G044700 Gossypium raimondii HOM05D005105 ORTHO05D006244 2.5e-145 519.6 561 51.7
TWI34G1796 Tripterygium wilfordii HOM05D005105 ORTHO05D006244 1.8e-143 513.5 561 51.2
Manes.04G087600 Manihot esculenta HOM05D005105 ORTHO05D006244 2.2e-141 506.5 551 50.8
CiPaw.03G004800 Carya illinoinensis HOM05D005105 ORTHO05D006244 3.2e-140 502.7 550 51.6
Ciclev10014761m.g Citrus clementina HOM05D005105 ORTHO05D006244 5.4e-140 501.9 487 55.6
PGR142G1816 Punica granatum HOM05D005105 ORTHO05D006244 1.0e-138 497.7 548 51.1
Cfa007197 Carpinus fangiana HOM05D005105 ORTHO05D006244 1.5e-137 493.8 567 50.4
Potri.001G325500 Populus trichocarpa HOM05D005105 ORTHO05D006244 1.9e-137 493.4 545 50.8
Haze_14911 Corylus avellana HOM05D005105 ORTHO05D006244 2.5e-137 493.0 530 52.5
Glyma.16G052500 Glycine max HOM05D005105 ORTHO05D006244 3.3e-137 492.7 548 50.7
CsaV3_5G024330 Cucumis sativus L. HOM05D005105 ORTHO05D006244 2.8e-136 489.6 518 52.1
ClCG01G008700 Citrullus lanatus HOM05D005105 ORTHO05D006244 3.1e-135 486.1 522 51.7
Sed0022814 Sechium edule HOM05D005105 ORTHO05D006244 6.8e-135 485.0 523 51.6
FvH4_6g53950 Fragaria vesca HOM05D005105 ORTHO05D006244 5.8e-134 481.9 324 73.5
Lj1g0026609 Lotus japonicus HOM05D005105 ORTHO05D006244 9.8e-134 481.1 550 49.6
MELO3C025087.2 Cucumis melo HOM05D005105 ORTHO05D006244 2.2e-133 479.9 517 51.3
GSVIVG01033038001 Vitis vinifera HOM05D005105 ORTHO05D006244 2.2e-133 479.9 550 51.6
Medtr7g026520 Medicago truncatula HOM05D005105 ORTHO05D006244 8.3e-133 478.0 547 50.1
Nn3g16360 Nelumbo nucifera HOM05D005105 ORTHO05D006244 3.2e-132 476.1 554 49.5
arahy.Tifrunner.gnm1.ann1.JMV5LB Arachis hypogaea HOM05D005105 ORTHO05D006244 1.2e-131 474.2 579 47.8
Gohir.D07G238700 Gossypium hirsutum HOM05D005105 ORTHO05D006244 2.0e-131 473.4 549 49.0
Lalb_Chr00c40g0412501 Lupinus albus HOM05D005105 ORTHO05D006244 2.7e-131 473.0 547 50.3
Gorai.001G274700 Gossypium raimondii HOM05D005105 ORTHO05D006244 3.5e-131 472.6 549 48.8
Solyc02g082210.4 Solanum lycopersicum HOM05D005105 ORTHO05D006244 6.0e-131 471.9 544 48.3
arahy.Tifrunner.gnm1.ann1.B1CDD0 Arachis hypogaea HOM05D005105 ORTHO05D006244 1.3e-130 470.7 548 49.5
Gohir.A07G231500 Gossypium hirsutum HOM05D005105 ORTHO05D006244 3.9e-130 469.2 549 48.5
VMungo1383G1917 Vigna mungo HOM05D005105 ORTHO05D006244 6.6e-130 468.4 540 49.8
Oeu020395.1 Olea europaea HOM05D005105 ORTHO05D006244 4.3e-129 465.7 550 49.3
Nitab4.5_0011381g0040 Nicotiana tabacum HOM05D005105 ORTHO05D006244 2.8e-128 463.0 537 48.2
Psat3g181600 Pisum sativum HOM05D005105 ORTHO05D006244 2.8e-128 463.0 546 48.7
PSO017G6125 Papaver somniferum HOM05D005105 ORTHO05D006244 3.6e-128 462.6 546 49.3
Cc07_g01060 Coffea canephora HOM05D005105 ORTHO05D006244 6.2e-128 461.8 561 47.4
Phvul.001G090000 Phaseolus vulgaris HOM05D005105 ORTHO05D006244 8.1e-128 461.5 545 49.4
Ca_07318_v3 Cicer arietinum L. HOM05D005105 ORTHO05D006244 1.4e-127 460.7 553 48.8
Rhsim08G0041000 Rhododendron simsii HOM05D005105 ORTHO05D006244 3.1e-127 459.5 532 49.8
PSO478G4366 Papaver somniferum HOM05D005105 ORTHO05D006244 1.2e-126 457.6 546 48.5
MD17G1010700 Malus domestica HOM05D005105 ORTHO05D006244 2.0e-126 456.8 324 71.9
Aqoxy5G03244_Aqoxy5G03245 Aquilegia oxysepala HOM05D005105 ORTHO05D006244 3.4e-126 456.1 555 48.5
Sp2g16080 Schrenkiella parvula HOM05D005105 ORTHO05D006244 4.4e-126 455.7 547 47.2
Lj2g0026571 Lotus japonicus HOM05D005105 ORTHO05D006244 7.5e-126 454.9 546 49.5
Migut.F00035 Erythranthe guttata HOM05D005105 ORTHO05D006244 1.9e-124 450.3 550 46.2
THA.LOC104825638 Tarenaya hassleriana HOM05D005105 ORTHO05D006244 1.6e-123 447.2 545 45.9
Thhalv10003939m.g Eutrema salsugineum HOM05D005105 ORTHO05D006244 2.7e-123 446.4 544 47.1
Lsat_1_v5_gn_0_23961 Lactuca sativa HOM05D005105 ORTHO05D006244 4.6e-123 445.7 533 47.8
EL10Ac6g15451 Beta vulgaris HOM05D005105 ORTHO05D006244 1.0e-122 444.5 566 46.3
Sc09g0007730 Simmondsia chinensis HOM05D005105 ORTHO05D006244 1.3e-122 444.1 496 51.6
C07p36060 Brassica napus HOM05D005105 ORTHO05D006244 1.7e-122 443.7 556 45.3
BcaC06g31032 Brassica carinata HOM05D005105 ORTHO05D006244 2.3e-122 443.4 545 46.8
HanXRQChr17g0551611 Helianthus annuus HOM05D005105 ORTHO05D006244 3.0e-122 443.0 545 46.4
Duzib264G1310 Durio zibethinus HOM05D005105 ORTHO05D006244 8.6e-122 441.4 484 51.7
Atru.chr6.2614 Acer truncatum HOM05D005105 ORTHO05D006244 1.5e-121 440.7 473 51.4
Actinidia36228 Actinidia chinensis HOM05D005105 ORTHO05D006244 1.5e-121 440.7 490 51.8
AUR62003394 Chenopodium quinoa HOM05D005105 ORTHO05D006244 3.3e-121 439.5 554 47.8
AT3G26950 Arabidopsis thaliana HOM05D005105 ORTHO05D006244 7.3e-121 438.3 545 45.7
Carub.0005s0514 Capsella rubella HOM05D005105 ORTHO05D006244 7.3e-121 438.3 557 45.2
Glyma.16G146100 Glycine max HOM05D005105 ORTHO05D006244 2.1e-120 436.8 550 47.1
Sabra16G0208000 Salix brachista HOM05D005105 ORTHO05D006244 2.8e-120 436.4 515 48.3
BcaC06g33873 Brassica carinata HOM05D005105 ORTHO05D006244 1.8e-119 433.7 529 46.1
AL5G15980 Arabidopsis lyrata HOM05D005105 ORTHO05D006244 4.0e-119 432.6 545 45.1
GSVIVG01008594001 Vitis vinifera HOM05D005105 ORTHO05D006244 4.0e-119 432.6 553 45.9
BolC7t44120H Brassica oleracea HOM05D005105 ORTHO05D006244 6.8e-119 431.8 534 45.9
AUR62029433 Chenopodium quinoa HOM05D005105 ORTHO05D006244 2.0e-118 430.3 545 46.2
BraA06t27085Z Brassica rapa HOM05D005105 ORTHO05D006244 2.6e-118 429.9 564 45.2
COL.COLO4_13307 Corchorus olitorius HOM05D005105 ORTHO05D006244 2.6e-118 429.9 424 53.1
DCAR_015209 Daucus carota HOM05D005105 ORTHO05D006244 3.4e-118 429.5 526 47.5
Lj7A613T64 Lonicera japonica HOM05D005105 ORTHO05D006244 4.4e-118 429.1 584 44.0
VMungo0464G0185 Vigna mungo HOM05D005105 ORTHO05D006244 2.9e-117 426.4 531 48.0
SalBow4G0131 Salvia bowleyana HOM05D005105 ORTHO05D006244 8.4e-117 424.9 552 46.2
Lsat_1_v5_gn_5_10960 Lactuca sativa HOM05D005105 ORTHO05D006244 2.4e-116 423.3 462 49.8
A06p41600 Brassica napus HOM05D005105 ORTHO05D006244 5.4e-116 422.2 529 45.9
ECA246G4542 Erigeron canadensis HOM05D005105 ORTHO05D006244 2.3e-114 416.8 545 45.9
Aa31LG2G5630 Aethionema arabicum HOM05D005105 ORTHO05D006244 4.3e-113 412.5 550 43.8
vmacro18364 Vaccinium macrocarpon HOM05D005105 ORTHO05D006244 4.3e-113 412.5 608 42.3
Nitab4.5_0011717g0030 Nicotiana tabacum HOM05D005105 ORTHO05D006244 7.3e-113 411.8 536 45.3
Phvul.004G070700 Phaseolus vulgaris HOM05D005105 ORTHO05D006244 4.7e-112 409.1 525 46.1
ATR0582G106 Amborella trichopoda HOM05D005105 ORTHO05D006244 1.1e-111 407.9 500 46.4
SHI04027 Sapria himalayana HOM05D005105 ORTHO05D006244 3.1e-111 406.4 579 42.5
THA.LOC104805319 Tarenaya hassleriana HOM05D005105 ORTHO05D006244 2.6e-110 403.3 548 43.8
HanXRQChr05g0155591 Helianthus annuus HOM05D005105 ORTHO05D006244 1.7e-109 400.6 506 45.1
vmacro19146 Vaccinium macrocarpon HOM05D005105 ORTHO05D006244 3.8e-109 399.4 618 40.5
CDE06G1277 Ceratophyllum demersum HOM05D005105 ORTHO05D006244 1.9e-108 397.1 503 45.3
DCAR_007509 Daucus carota HOM05D005105 ORTHO05D006244 7.8e-107 391.7 538 44.1
Atru.chr6.2613 Acer truncatum HOM05D005105 ORTHO05D006244 3.0e-106 389.8 321 59.8
unitig_0.g1913 Utricularia gibba HOM05D005105 ORTHO05D006244 4.3e-105 386.0 418 50.0
Eucgr.I01623 Eucalyptus grandis HOM05D005105 ORTHO05D006244 5.6e-105 385.6 324 61.7
Peaxi162Scf00331g00014 Petunia axillaris HOM05D005105 ORTHO05D006244 1.6e-104 384.0 454 48.7
Dinv33309 Davidia involucrata HOM05D005105 ORTHO05D006244 4.8e-104 382.5 319 61.8
Gohir.A09G038300 Gossypium hirsutum HOM05D005105 ORTHO05D006244 4.8e-104 382.5 428 51.4
Cpa.g.sc70.110 Carica papaya HOM05D005105 ORTHO05D006244 3.8e-101 372.9 418 50.5
Os11g0507400 Oryza sativa ssp. japonica HOM05D005105 ORTHO05D006244 4.9e-101 372.5 489 43.8
CSS0029044 Camellia sinensis var. sinensis HOM05D005105 ORTHO05D006244 4.6e-99 365.9 327 56.0
Lj5A92G44 Lonicera japonica HOM05D005105 ORTHO05D006244 6.7e-98 362.1 325 55.4
Sopen02g026870 Solanum pennellii HOM05D005105 ORTHO05D006244 4.3e-97 359.4 316 57.3
Hma1.2p1_0093F.1_g046930 Hydrangea macrophylla HOM05D005105 ORTHO05D006244 3.7e-96 356.3 323 56.0
PGSC0003DMG400013660 Solanum tuberosum HOM05D005105 ORTHO05D006244 1.4e-95 354.4 316 56.6
CARHR148130 Cardamine hirsuta HOM05D005105 ORTHO05D006244 7.1e-92 342.0 321 54.2
CSS0048130 Camellia sinensis var. sinensis HOM05D005105 ORTHO05D006244 2.5e-89 333.6 325 55.1
HPP92_009891 Vanilla planifolia HOM05D005105 ORTHO05D006244 3.3e-89 333.2 349 49.6
Dinv23187 Davidia involucrata HOM05D005105 ORTHO05D006244 1.4e-76 291.2 261 58.6
Actinidia18328 Actinidia chinensis HOM05D005105 ORTHO05D006244 1.2e-75 288.1 279 54.1
TWI34G0688 Tripterygium wilfordii HOM05D005105 ORTHO05D006244 3.3e-73 280.0 235 58.7
ECA246G1012 Erigeron canadensis HOM05D005105 ORTHO05D006244 2.6e-70 270.4 400 43.5
Pp3c21_14570 Physcomitrium patens HOM05D005105 ORTHO05D006244 7.7e-70 268.9 519 36.2
SMO180G0002 Selaginella moellendorffii HOM05D005105 ORTHO05D006244 2.7e-67 260.4 467 36.0
Pp3c1_35010 Physcomitrium patens HOM05D005105 ORTHO05D006244 3.9e-66 256.5 504 35.3
Glyma.02G065000 Glycine max HOM05D005105 ORTHO05D006244 1.4e-55 221.5 352 42.6
PSO063G6475 Papaver somniferum HOM05D005105 ORTHO05D006244 1.0e-45 188.7 292 42.1
CDE05G2066 Ceratophyllum demersum HOM05D005105 ORTHO05D006244 1.9e-44 184.5 162 58.0
Actinidia25549 Actinidia chinensis HOM05D005105 ORTHO05D006244 2.9e-37 160.6 135 57.8
Gohir.D09G039750 Gossypium hirsutum HOM05D005105 ORTHO05D006244 3.6e-35 153.7 121 62.8
THA.LOC104813335 Tarenaya hassleriana HOM05D005105 ORTHO05D006244 1.2e-33 148.7 250 39.6
Atru.chr6.2612 Acer truncatum HOM05D005105 ORTHO05D006244 1.4e-31 141.7 110 67.3
FAN05G0264 Fragaria x ananassa HOM05D005105 ORTHO05D006244 1.4e-31 141.7 132 59.8
Dinv23186 Davidia involucrata HOM05D005105 ORTHO05D006244 4.1e-31 140.2 143 54.5
Gohir.D09G039801 Gossypium hirsutum HOM05D005105 ORTHO05D006244 1.3e-29 135.2 150 52.7
Glyma.19G097101 Glycine max HOM05D005105 ORTHO05D006244 1.7e-29 134.8 87 74.7
Actinidia05877 Actinidia chinensis HOM05D000139 ORTHO05D000103 3.8e-29 133.7 104 65.4
SGA_v2.0_scaffold253G45172 Striga asiatica HOM05D005105 ORTHO05D006244 1.9e-28 131.3 141 51.8
Ah.03g148260 Amaranthus hybridus HOM05D005105 ORTHO05D006244 3.3e-28 130.6 100 64.0
AagrBONN_evm.TU.Sc2ySwM_340.35 Anthoceros agrestis HOM05D005105 ORTHO05D006244 5.6e-28 129.8 330 30.6
Actinidia18329 Actinidia chinensis HOM05D005105 ORTHO05D006244 4.7e-27 126.7 156 48.1
HPP92_009881 Vanilla planifolia HOM05D005105 ORTHO05D006244 6.8e-26 122.9 211 37.0
Dinv33310 Davidia involucrata HOM05D005105 ORTHO05D006244 8.3e-24 115.9 114 54.4
Glyma.19G097001 Glycine max HOM05D005105 ORTHO05D006244 2.4e-23 114.4 121 53.7
HPP92_009897 Vanilla planifolia HOM05D005105 ORTHO05D006244 2.7e-22 110.9 112 52.7
Lj5A92G45 Lonicera japonica HOM05D005105 ORTHO05D006244 1.4e-15 88.6 53 73.6
HPP92_009880 Vanilla planifolia HOM05D005105 ORTHO05D006244 6.8e-10 69.7 63 52.4
CSS0040735 Camellia sinensis var. sinensis HOM05D005105 ORTHO05D006244 3.7e-08 63.9 86 44.2
CBR_g57654 Chara braunii HOM05D000004 ORTHO05D000002 1.1e-07 62.4 84 39.3


User provided reference genes

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