Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G296000 Prunus persica HOM05D007617 ORTHO05D007195 3.8e-67 258.1 133 100.0
QL02p073546 Quercus lobata HOM05D007617 ORTHO05D007195 2.6e-31 139.0 136 60.3
Ciclev10017789m.g Citrus clementina HOM05D007617 ORTHO05D007195 4.8e-22 108.2 141 48.9
TAR374G0075 Trochodendron aralioides HOM05D007617 ORTHO05D007195 2.4e-21 105.9 140 49.3
ClCG05G013140 Citrullus lanatus HOM05D007617 ORTHO05D007195 3.1e-21 105.5 124 50.8
CiPaw.03G047400 Carya illinoinensis HOM05D007617 ORTHO05D007195 3.5e-20 102.1 138 51.4
CiPaw.09G026700 Carya illinoinensis HOM05D007617 ORTHO05D007195 3.5e-20 102.1 138 51.4
Aqoxy5G03650 Aquilegia oxysepala HOM05D007617 ORTHO05D007195 4.5e-20 101.7 142 45.8
Cfa007314 Carpinus fangiana HOM05D000615 ORTHO05D007195 7.7e-20 100.9 139 49.6
DCAR_011273 Daucus carota HOM05D007617 ORTHO05D007195 7.7e-20 100.9 139 49.6
Haze_14778 Corylus avellana HOM05D007617 ORTHO05D007195 1.3e-19 100.1 131 48.9
Sed0018064 Sechium edule HOM05D007617 ORTHO05D007195 1.3e-19 100.1 137 50.4
Atru.chr6.2453 Acer truncatum HOM05D007617 ORTHO05D007195 1.7e-19 99.8 140 45.7
Psat6g179560 Pisum sativum HOM05D007617 ORTHO05D007195 3.8e-19 98.6 134 44.8
CsaV3_3G027400 Cucumis sativus L. HOM05D007617 ORTHO05D007195 5.0e-19 98.2 137 48.2
MELO3C014838.2 Cucumis melo HOM05D007617 ORTHO05D007195 1.1e-18 97.1 137 47.4
Medtr1g093790 Medicago truncatula HOM05D007617 ORTHO05D007195 1.1e-18 97.1 133 44.4
Hma1.2p1_0818F.1_g223400 Hydrangea macrophylla HOM05D007617 ORTHO05D007195 1.9e-18 96.3 138 44.9
TPR.G31739 Trifolium pratense HOM05D007617 ORTHO05D007195 2.5e-18 95.9 134 44.0
Sed0015223 Sechium edule HOM05D007617 ORTHO05D007195 5.5e-18 94.7 137 48.2
Lalb_Chr21g0317701 Lupinus albus HOM05D007617 ORTHO05D007195 9.5e-18 94.0 135 49.6
vmacro18302 Vaccinium macrocarpon HOM05D007617 ORTHO05D007195 9.5e-18 94.0 133 44.4
Lj2g0010313 Lotus japonicus HOM05D007617 ORTHO05D007195 1.6e-17 93.2 138 48.6
CANSAT64G0294 Cannabis sativa HOM05D007617 ORTHO05D007195 2.1e-17 92.8 140 46.4
Glyma.05G114700 Glycine max HOM05D007617 ORTHO05D007195 2.1e-17 92.8 136 47.1
Dinv33408 Davidia involucrata HOM05D007617 ORTHO05D007195 1.0e-16 90.5 139 43.2
Lalb_Chr02g0158101 Lupinus albus HOM05D007617 ORTHO05D007195 1.0e-16 90.5 134 45.5
TAR371G0337 Trochodendron aralioides HOM05D007617 ORTHO05D007195 1.0e-16 90.5 137 45.3
Potri.012G090700 Populus trichocarpa HOM05D007617 ORTHO05D007195 1.5e-15 86.7 146 41.1
Thecc.03G118700 Theobroma cacao HOM05D011792 ORTHO05D007195 2.0e-15 86.3 149 43.0
Ca_11155_v3 Cicer arietinum L. HOM05D007617 ORTHO05D007195 1.3e-14 83.6 133 42.1
Ca_11158_v3 Cicer arietinum L. HOM05D007617 ORTHO05D007195 1.3e-14 83.6 133 42.1
Ciclev10022896m.g Citrus clementina HOM05D007617 ORTHO05D007195 1.3e-14 83.6 139 43.2
MD06G1161600 Malus domestica HOM05D007617 ORTHO05D007195 2.2e-14 82.8 138 43.5
PGR142G0897 Punica granatum HOM05D007617 ORTHO05D007195 2.2e-14 82.8 138 44.2
Glyma.19G053100 Glycine max HOM05D007617 ORTHO05D007195 6.3e-14 81.3 136 46.3
Sopen02g038090 Solanum pennellii HOM05D007617 ORTHO05D007195 6.3e-14 81.3 155 43.2
Phvul.004G059700 Phaseolus vulgaris HOM05D007617 ORTHO05D007195 1.4e-13 80.1 138 48.6
RcHm_v2.0_Chr7g0191931 Rosa chinensis HOM05D007617 ORTHO05D007195 1.4e-13 80.1 137 44.5
QL10p005918 Quercus lobata HOM05D007617 ORTHO05D007195 1.8e-13 79.7 139 41.7
Solyc02g067910.1 Solanum lycopersicum HOM05D007617 ORTHO05D007195 1.8e-13 79.7 64 68.8
Sopen02g017030 Solanum pennellii HOM05D007617 ORTHO05D007195 1.8e-13 79.7 64 68.8
PGSC0003DMG400012616 Solanum tuberosum HOM05D007617 ORTHO05D007195 1.8e-13 79.7 142 45.8
Nitab4.5_0004496g0030 Nicotiana tabacum HOM05D007617 ORTHO05D007195 7.0e-13 77.8 134 41.0
TAR622G0315 Trochodendron aralioides HOM05D007617 ORTHO05D007195 1.2e-12 77.0 141 41.1
VMungo0464G0279 Vigna mungo HOM05D007617 ORTHO05D007195 1.6e-12 76.6 138 47.8
Rhsim08G0047600 Rhododendron simsii HOM05D007617 ORTHO05D007195 2.0e-12 76.3 133 42.1
EL10As2g23175 Beta vulgaris HOM05D007617 ORTHO05D007195 4.5e-12 75.1 131 41.2
Manes.06G112400 Manihot esculenta HOM05D007617 ORTHO05D007195 7.8e-12 74.3 141 41.8
Prupe.5G161500 Prunus persica HOM05D007617 ORTHO05D007195 7.8e-12 74.3 139 38.8
Lsat_1_v5_gn_2_91001 Lactuca sativa HOM05D007617 ORTHO05D007195 1.0e-11 73.9 143 40.6
Nn4g22527 Nelumbo nucifera HOM05D007617 ORTHO05D007195 2.9e-11 72.4 141 39.0
Lsat_1_v5_gn_2_94241 Lactuca sativa HOM05D007617 ORTHO05D007195 3.9e-11 72.0 143 39.2
MD02G1049300 Malus domestica HOM05D007617 ORTHO05D007195 3.9e-11 72.0 140 42.1
Nn3g16639 Nelumbo nucifera HOM05D007617 ORTHO05D007195 3.9e-11 72.0 139 38.8
Manes.14G057300 Manihot esculenta HOM05D007617 ORTHO05D007195 5.0e-11 71.6 69 56.5
Nitab4.5_0000040g0620 Nicotiana tabacum HOM05D007617 ORTHO05D007195 5.0e-11 71.6 65 61.5
CAN.G1057.14 Capsicum annuum HOM05D007617 ORTHO05D007195 6.6e-11 71.2 68 60.3
FvH4_5g06710 Fragaria vesca HOM05D007617 ORTHO05D007195 8.6e-11 70.9 65 61.5
FAN08G2040 Fragaria x ananassa HOM05D007617 ORTHO05D007195 8.6e-11 70.9 65 61.5
FAN13G2538 Fragaria x ananassa HOM05D007617 ORTHO05D007195 8.6e-11 70.9 133 39.1
FAN18G3066 Fragaria x ananassa HOM05D007617 ORTHO05D007195 8.6e-11 70.9 65 61.5
Carub.0008s2391 Capsella rubella HOM05D010525 ORTHO05D007195 1.1e-10 70.5 96 47.9
Cc07_g00130 Coffea canephora HOM05D007617 ORTHO05D007195 1.5e-10 70.1 92 55.4
PGSC0003DMG400006919 Solanum tuberosum HOM05D007617 ORTHO05D007195 3.3e-10 68.9 63 60.3
Atru.chr9.1807 Acer truncatum HOM05D007617 ORTHO05D007195 4.3e-10 68.6 137 42.3
Haze_07632 Corylus avellana HOM05D007617 ORTHO05D007195 4.3e-10 68.6 144 38.9
MSTRG.549 Avicennia marina HOM05D007617 ORTHO05D007195 9.5e-10 67.4 145 38.6
Migut.K00629 Erythranthe guttata HOM05D007617 ORTHO05D007195 9.5e-10 67.4 139 40.3
Gohir.D07G059400 Gossypium hirsutum HOM05D011792 ORTHO05D007195 9.5e-10 67.4 144 39.6
Oeu023836.1 Olea europaea HOM05D007617 ORTHO05D007195 9.5e-10 67.4 168 37.5
Nitab4.5_0014774g0010 Nicotiana tabacum HOM05D007617 ORTHO05D007195 1.2e-09 67.0 143 40.6
MD14G1167200 Malus domestica HOM05D007617 ORTHO05D007195 1.6e-09 66.6 128 39.8
SGA_v2.0_scaffold47G17524 Striga asiatica HOM05D007617 ORTHO05D007195 1.6e-09 66.6 118 44.1
AL8G40240 Arabidopsis lyrata HOM05D010525 ORTHO05D007195 2.8e-09 65.9 96 45.8
Gohir.A07G055100 Gossypium hirsutum HOM05D011792 ORTHO05D007195 4.7e-09 65.1 144 38.2
Gorai.001G062900 Gossypium raimondii HOM05D011792 ORTHO05D007195 4.7e-09 65.1 144 38.9
Duzib205G1108 Durio zibethinus HOM05D011792 ORTHO05D007195 6.1e-09 64.7 149 36.9
FAN04G0785 Fragaria x ananassa HOM05D007617 ORTHO05D007195 8.0e-09 64.3 133 36.8
Hund06047 Selenicereus undatus HOM05D007617 ORTHO05D007195 8.0e-09 64.3 94 44.7
Sc04g0009720 Simmondsia chinensis HOM05D007617 ORTHO05D007195 1.0e-08 63.9 114 43.9
ATR1145G009 Amborella trichopoda HOM05D007617 ORTHO05D007195 1.4e-08 63.5 67 61.2
Oeu054643.1 Olea europaea HOM05D007617 ORTHO05D007195 3.1e-08 62.4 69 58.0
CiPaw.11G014400 Carya illinoinensis HOM05D007617 ORTHO05D007195 4.0e-08 62.0 141 38.3
Thhalv10010898m.g Eutrema salsugineum HOM05D010525 ORTHO05D007195 4.0e-08 62.0 142 40.8
Manes.15G153500 Manihot esculenta HOM05D007617 ORTHO05D007195 4.0e-08 62.0 148 39.2
Actinidia36140 Actinidia chinensis HOM05D007617 ORTHO05D007195 5.2e-08 61.6 140 34.3
Aa31LG1G18820 Aethionema arabicum HOM05D010525 ORTHO05D007195 5.2e-08 61.6 140 35.7
MSTRG.15542 Avicennia marina HOM05D007617 ORTHO05D007195 5.2e-08 61.6 144 41.0
CARHR276990 Cardamine hirsuta HOM05D010525 ORTHO05D007195 5.2e-08 61.6 140 35.0
Potri.001G340100 Populus trichocarpa HOM05D007617 ORTHO05D007195 5.2e-08 61.6 137 39.4
AT5G63150 Arabidopsis thaliana HOM05D010525 ORTHO05D007195 6.8e-08 61.2 145 36.6
BcaC07g39315 Brassica carinata HOM05D010525 ORTHO05D007195 6.8e-08 61.2 139 39.6
C08p23300 Brassica napus HOM05D010525 ORTHO05D007195 6.8e-08 61.2 139 39.6
BolC8t49961H Brassica oleracea HOM05D010525 ORTHO05D007195 6.8e-08 61.2 139 39.6
Oeu050454.1 Olea europaea HOM05D007617 ORTHO05D007195 8.9e-08 60.8 69 55.1
Sp5g13710 Schrenkiella parvula HOM05D010525 ORTHO05D007195 1.5e-07 60.1 146 42.5
BcaB01g00826 Brassica carinata HOM05D010525 ORTHO05D007195 2.6e-07 59.3 138 37.7
BraA06t25018Z Brassica rapa HOM05D010525 ORTHO05D007195 2.6e-07 59.3 139 40.3
Gohir.A12G186700 Gossypium hirsutum HOM05D011792 ORTHO05D007195 3.4e-07 58.9 142 35.2
Lj7P603T33 Lonicera japonica HOM05D007617 ORTHO05D007195 3.4e-07 58.9 127 33.1
TWI23G0333 Tripterygium wilfordii HOM05D007617 ORTHO05D007195 3.4e-07 58.9 66 57.6
Migut.K01418 Erythranthe guttata HOM05D007617 ORTHO05D007195 5.8e-07 58.2 81 50.6
Lsat_1_v5_gn_3_30061 Lactuca sativa HOM05D007617 ORTHO05D007195 5.8e-07 58.2 67 56.7
CANSAT80G0013 Cannabis sativa HOM05D007617 ORTHO05D007195 7.5e-07 57.8 137 37.2
Gohir.D12G189700 Gossypium hirsutum HOM05D011792 ORTHO05D007195 2.9e-06 55.8 142 35.2
SGA_v2.0_scaffold30G12404 Striga asiatica HOM05D007617 ORTHO05D007195 8.3e-06 54.3 67 50.7


User provided reference genes

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