Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G295100 Prunus persica HOM05D007296 ORTHO05D009201 5.2e-62 241.1 145 100.0
QL02p073829 Quercus lobata HOM05D007296 ORTHO05D009201 8.2e-23 110.9 140 50.7
Atru.chr6.2441 Acer truncatum HOM05D007296 ORTHO05D009201 1.2e-21 107.1 133 56.4
Ciclev10017118m.g Citrus clementina HOM05D007296 ORTHO05D009201 1.3e-20 103.6 142 47.2
Lj1g0014101 Lotus japonicus HOM05D007296 ORTHO05D009201 1.7e-20 103.2 115 51.3
Potri.001G342100 Populus trichocarpa HOM05D007296 ORTHO05D009201 2.2e-20 102.8 82 67.1
Haze_14767 Corylus avellana HOM05D007296 ORTHO05D009201 5.5e-19 98.2 140 47.1
Lalb_Chr22g0360681 Lupinus albus HOM05D007296 ORTHO05D009201 5.5e-19 98.2 86 60.5
Psat3g172000 Pisum sativum HOM05D007296 ORTHO05D009201 6.0e-18 94.7 77 63.6
Cfa007330 Carpinus fangiana HOM05D007296 ORTHO05D009201 7.9e-18 94.4 140 45.7
CiPaw.03G046500 Carya illinoinensis HOM05D007296 ORTHO05D009201 7.9e-18 94.4 138 49.3
Medtr7g033080 Medicago truncatula HOM05D007296 ORTHO05D009201 7.9e-18 94.4 78 61.5
Glyma.16G068200 Glycine max HOM05D007296 ORTHO05D009201 1.0e-17 94.0 78 64.1
FAN02G1968 Fragaria x ananassa HOM05D007296 ORTHO05D009201 3.0e-17 92.4 131 44.3
Manes.15G152600 Manihot esculenta HOM05D007296 ORTHO05D009201 3.0e-17 92.4 146 47.3
FAN14G0692 Fragaria x ananassa HOM05D007296 ORTHO05D009201 5.1e-17 91.7 132 43.9
Duzib187G0331 Durio zibethinus HOM05D007296 ORTHO05D009201 6.7e-17 91.3 124 46.8
Glyma.19G078800 Glycine max HOM05D007296 ORTHO05D009201 8.7e-17 90.9 115 49.6
Ca_06610_v3 Cicer arietinum L. HOM05D007296 ORTHO05D009201 1.1e-16 90.5 77 59.7
Ca_30727_v3 Cicer arietinum L. HOM05D007296 ORTHO05D009201 1.1e-16 90.5 77 59.7
TPR.G1088 Trifolium pratense HOM05D007296 ORTHO05D009201 1.9e-16 89.7 77 59.7
FvH4_6g51980 Fragaria vesca HOM05D007296 ORTHO05D009201 2.5e-16 89.4 132 43.2
VMungo1383G0878 Vigna mungo HOM05D007296 ORTHO05D009201 2.5e-16 89.4 79 59.5
Eucgr.I01721 Eucalyptus grandis HOM05D007296 ORTHO05D009201 5.7e-16 88.2 116 50.9
ClCG09G019420 Citrullus lanatus HOM05D007296 ORTHO05D009201 9.7e-16 87.4 78 59.0
FAN09G0682 Fragaria x ananassa HOM05D007296 ORTHO05D009201 2.2e-15 86.3 131 42.7
Phvul.008G151600 Phaseolus vulgaris HOM05D007296 ORTHO05D009201 2.2e-15 86.3 79 57.0
Dinv33417 Davidia involucrata HOM05D007296 ORTHO05D009201 2.8e-15 85.9 124 50.0
CiPaw.04G030100 Carya illinoinensis HOM05D007296 ORTHO05D009201 4.8e-15 85.1 92 56.5
Thecc.04G021100 Theobroma cacao HOM05D007296 ORTHO05D009201 4.8e-15 85.1 128 44.5
CsaV3_5G026960 Cucumis sativus L. HOM05D007296 ORTHO05D009201 6.3e-15 84.7 83 56.6
TWI56G0033 Tripterygium wilfordii HOM05D007296 ORTHO05D009201 6.3e-15 84.7 144 43.1
MELO3C021597.2 Cucumis melo HOM05D007296 ORTHO05D009201 8.2e-15 84.3 83 55.4
Cc02_g32290 Coffea canephora HOM05D007296 ORTHO05D009201 1.1e-14 84.0 97 52.6
ATR0199G042 Amborella trichopoda HOM05D007296 ORTHO05D009201 3.1e-14 82.4 89 49.4
FAN05G3275 Fragaria x ananassa HOM05D007296 ORTHO05D009201 3.1e-14 82.4 132 41.7
RcHm_v2.0_Chr2g0173451 Rosa chinensis HOM05D007296 ORTHO05D009201 4.1e-14 82.0 127 41.7
Sed0024202 Sechium edule HOM05D007296 ORTHO05D009201 4.1e-14 82.0 93 51.6
Lsat_1_v5_gn_2_91081 Lactuca sativa HOM05D007296 ORTHO05D009201 6.9e-14 81.3 79 55.7
Migut.H00030 Erythranthe guttata HOM05D007296 ORTHO05D009201 2.0e-13 79.7 133 44.4
DCAR_021738 Daucus carota HOM05D000631 ORTHO05D000524 2.6e-13 79.3 81 51.9
Gohir.A09G030400 Gossypium hirsutum HOM05D007296 ORTHO05D009201 5.9e-13 78.2 119 42.0
Gohir.D09G030000 Gossypium hirsutum HOM05D007296 ORTHO05D009201 1.0e-12 77.4 119 41.2
Hma1.2p1_0818F.1_g223340 Hydrangea macrophylla HOM05D007296 ORTHO05D009201 1.0e-12 77.4 87 50.6
Lsat_1_v5_gn_0_6101 Lactuca sativa HOM05D007296 ORTHO05D009201 2.2e-12 76.3 83 51.8
PGR142G0831 Punica granatum HOM05D007296 ORTHO05D009201 2.2e-12 76.3 83 55.4
CAN.G473.34 Capsicum annuum HOM05D007296 ORTHO05D009201 2.9e-12 75.9 119 41.2
PGSC0003DMG400012614 Solanum tuberosum HOM05D007296 ORTHO05D009201 2.9e-12 75.9 112 43.8
Aqoxy3G01286 Aquilegia oxysepala HOM05D007296 ORTHO05D009201 1.1e-11 73.9 77 46.8
Aqoxy7G03797 Aquilegia oxysepala HOM05D007296 ORTHO05D009201 1.1e-11 73.9 85 43.5
PSO017G3033 Papaver somniferum HOM05D007296 ORTHO05D009201 1.1e-11 73.9 125 39.2
CSS0008661 Camellia sinensis var. sinensis HOM05D007296 ORTHO05D009201 1.4e-11 73.6 117 41.9
Aqoxy5G03689 Aquilegia oxysepala HOM05D007296 ORTHO05D009201 2.5e-11 72.8 94 41.5
TAR371G0818 Trochodendron aralioides HOM05D007296 ORTHO05D009201 2.5e-11 72.8 93 46.2
Nn4g22550 Nelumbo nucifera HOM05D007296 ORTHO05D009201 3.2e-11 72.4 77 51.9
Cpa.g.sc130.72 Carica papaya HOM05D007296 ORTHO05D009201 5.5e-11 71.6 78 55.1
Glyma.05G115500 Glycine max HOM05D007296 ORTHO05D009201 5.5e-11 71.6 128 43.0
Glyma.19G051600 Glycine max HOM05D007296 ORTHO05D009201 5.5e-11 71.6 126 43.7
Nn3g16657 Nelumbo nucifera HOM05D007296 ORTHO05D009201 1.2e-10 70.5 81 44.4
CiPaw.11G015200 Carya illinoinensis HOM05D007296 ORTHO05D009201 2.7e-10 69.3 73 50.7
Phvul.004G061700 Phaseolus vulgaris HOM05D007296 ORTHO05D009201 2.7e-10 69.3 127 40.2
THA.LOC104821171 Tarenaya hassleriana HOM05D007296 ORTHO05D009201 4.6e-10 68.6 135 38.5
DCAR_015066 Daucus carota HOM05D007296 ORTHO05D009201 6.1e-10 68.2 93 47.3
SalBow1G6940 Salvia bowleyana HOM05D007296 ORTHO05D009201 7.9e-10 67.8 122 39.3
SGA_v2.0_scaffold47G17522 Striga asiatica HOM05D000631 ORTHO05D000524 3.0e-09 65.9 72 50.0
SGA_v2.0_scaffold18G08254 Striga asiatica HOM05D007296 ORTHO05D009201 6.7e-09 64.7 142 37.3
TAR374G0807 Trochodendron aralioides HOM05D007296 ORTHO05D009201 6.7e-09 64.7 94 44.7
Prupe.5G162900 Prunus persica HOM05D007296 ORTHO05D009201 8.8e-09 64.3 98 41.8
Sc16g0004380 Simmondsia chinensis HOM05D007296 ORTHO05D009201 8.8e-09 64.3 122 34.4
A10p24110 Brassica napus HOM05D007296 ORTHO05D009201 1.1e-08 63.9 78 46.2
BraA10t44476Z Brassica rapa HOM05D007296 ORTHO05D009201 1.1e-08 63.9 78 46.2
Manes.14G057736 Manihot esculenta HOM05D007296 ORTHO05D009201 2.0e-08 63.2 90 43.3
BolC9t59112H Brassica oleracea HOM05D007296 ORTHO05D009201 2.5e-08 62.8 78 44.9
Aa31LG11G15190 Aethionema arabicum HOM05D007296 ORTHO05D009201 4.3e-08 62.0 67 50.7
Carub.0006s1259 Capsella rubella HOM05D007296 ORTHO05D009201 4.3e-08 62.0 77 46.8
C09p62750 Brassica napus HOM05D007296 ORTHO05D009201 5.7e-08 61.6 78 43.6
MBI10_g42976_MAGBIO Magnolia biondii HOM05D007296 ORTHO05D009201 5.7e-08 61.6 90 42.2
Ah.12g055220 Amaranthus hybridus HOM05D007296 ORTHO05D009201 7.4e-08 61.2 71 50.7
CARHR198900 Cardamine hirsuta HOM05D007296 ORTHO05D009201 9.7e-08 60.8 122 37.7
Ciclev10022926m.g Citrus clementina HOM05D007296 ORTHO05D009201 9.7e-08 60.8 73 47.9
Thhalv10014918m.g Eutrema salsugineum HOM05D007296 ORTHO05D009201 9.7e-08 60.8 77 44.2
Lj4g0005296 Lotus japonicus HOM05D007296 ORTHO05D009201 9.7e-08 60.8 133 33.1
AL6G25130 Arabidopsis lyrata HOM05D007296 ORTHO05D009201 1.3e-07 60.5 125 35.2
Thecc.03G117800 Theobroma cacao HOM05D007296 ORTHO05D009201 1.3e-07 60.5 76 46.1
Ca_30679_v3 Cicer arietinum L. HOM05D007296 ORTHO05D009201 1.7e-07 60.1 68 41.2
Gorai.001G063200 Gossypium raimondii HOM05D007296 ORTHO05D009201 1.7e-07 60.1 87 43.7
unitig_0.g1597 Utricularia gibba HOM05D004929 ORTHO05D006492 1.7e-07 60.1 143 32.9
Gohir.D07G059700 Gossypium hirsutum HOM05D007296 ORTHO05D009201 2.2e-07 59.7 72 48.6
AT5G14410 Arabidopsis thaliana HOM05D007296 ORTHO05D009201 3.7e-07 58.9 125 34.4
EL10Ac5g12075 Beta vulgaris HOM05D007296 ORTHO05D009201 3.7e-07 58.9 67 49.3
BcaB08g36986 Brassica carinata HOM05D007296 ORTHO05D009201 3.7e-07 58.9 50 56.0
SGA_v2.0_scaffold135G34923 Striga asiatica HOM05D007296 ORTHO05D009201 3.7e-07 58.9 107 41.1
Sabra15G0109100 Salix brachista HOM05D000631 ORTHO05D000524 4.8e-07 58.5 73 45.2
Sp6g29610 Schrenkiella parvula HOM05D007296 ORTHO05D009201 4.8e-07 58.5 78 42.3
Gohir.A07G055400 Gossypium hirsutum HOM05D007296 ORTHO05D009201 6.3e-07 58.2 72 47.2
ECA246G1504 Erigeron canadensis HOM05D007296 ORTHO05D009201 1.1e-06 57.4 119 35.3
Lalb_Chr07g0183081 Lupinus albus HOM05D007296 ORTHO05D009201 1.1e-06 57.4 100 37.0
COL.COLO4_30221 Corchorus olitorius HOM05D007296 ORTHO05D009201 2.4e-06 56.2 67 47.8
Sopen02g038130 Solanum pennellii HOM05D007296 ORTHO05D009201 3.1e-06 55.8 71 45.1


User provided reference genes

Program Settings