Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G286100 Prunus persica HOM05D006084 ORTHO05D007449 3.9e-63 244.6 121 100.0
MD17G1033600 Malus domestica HOM05D006084 ORTHO05D007449 1.6e-56 222.6 121 90.9
Dinv33481 Davidia involucrata HOM05D006084 ORTHO05D007449 4.4e-54 214.5 118 86.4
Rhsim08G0053800 Rhododendron simsii HOM05D006084 ORTHO05D007449 3.7e-53 211.5 118 86.4
RcHm_v2.0_Chr2g0172221 Rosa chinensis HOM05D006084 ORTHO05D007449 4.8e-53 211.1 119 86.6
CSS0000489 Camellia sinensis var. sinensis HOM05D006084 ORTHO05D007449 6.3e-53 210.7 118 87.3
CSS0035017 Camellia sinensis var. sinensis HOM05D006084 ORTHO05D007449 6.3e-53 210.7 118 87.3
TAR371G1194 Trochodendron aralioides HOM05D006084 ORTHO05D007449 2.4e-52 208.8 118 84.7
Actinidia35746 Actinidia chinensis HOM05D006084 ORTHO05D007449 5.3e-52 207.6 118 85.6
FvH4_6g50830 Fragaria vesca HOM05D006084 ORTHO05D007449 5.3e-52 207.6 119 85.7
FAN02G2714 Fragaria x ananassa HOM05D006084 ORTHO05D007449 1.6e-51 206.1 119 84.9
FAN14G2625 Fragaria x ananassa HOM05D006084 ORTHO05D007449 1.6e-51 206.1 119 84.9
Atru.chr6.2220 Acer truncatum HOM05D006084 ORTHO05D007449 2.0e-51 205.7 118 83.9
Cfa007418 Carpinus fangiana HOM05D006084 ORTHO05D007449 2.7e-51 205.3 118 83.9
Manes.17G116000 Manihot esculenta HOM05D006084 ORTHO05D007449 2.7e-51 205.3 118 83.9
CiPaw.03G039200 Carya illinoinensis HOM05D006084 ORTHO05D007449 5.9e-51 204.1 118 83.1
Haze_14684 Corylus avellana HOM05D006084 ORTHO05D007449 7.7e-51 203.8 117 83.8
QL02p076043 Quercus lobata HOM05D006084 ORTHO05D007449 7.7e-51 203.8 117 82.1
QL02p076078 Quercus lobata HOM05D006084 ORTHO05D007449 7.7e-51 203.8 117 82.1
Gohir.D07G227900 Gossypium hirsutum HOM05D006084 ORTHO05D007449 1.3e-50 203.0 118 82.2
Aqoxy3G02941 Aquilegia oxysepala HOM05D006084 ORTHO05D007449 1.7e-50 202.6 118 82.2
FAN05G5625 Fragaria x ananassa HOM05D006084 ORTHO05D007449 3.8e-50 201.4 117 84.6
PGR142G2538 Punica granatum HOM05D006084 ORTHO05D007449 3.8e-50 201.4 121 81.0
Gohir.A07G221200 Gossypium hirsutum HOM05D006084 ORTHO05D007449 5.0e-50 201.1 118 80.5
Hma1.2p1_0846F.1_g227700 Hydrangea macrophylla HOM05D006084 ORTHO05D007449 6.5e-50 200.7 118 82.2
Eucgr.I01785 Eucalyptus grandis HOM05D006084 ORTHO05D007449 8.5e-50 200.3 121 78.5
HanXRQChr07g0198791 Helianthus annuus HOM05D006084 ORTHO05D007449 1.1e-49 199.9 119 82.4
CAN.G206.22 Capsicum annuum HOM05D006084 ORTHO05D007449 1.9e-49 199.1 118 80.5
CDE08G0643 Ceratophyllum demersum HOM05D006084 ORTHO05D007449 4.2e-49 198.0 119 78.2
HanXRQChr14g0450361 Helianthus annuus HOM05D006084 ORTHO05D007449 2.1e-48 195.7 119 79.8
PGSC0003DMG400000490 Solanum tuberosum HOM05D006084 ORTHO05D007449 2.7e-48 195.3 117 80.3
Ca_16579_v3 Cicer arietinum L. HOM05D006084 ORTHO05D007449 4.7e-48 194.5 118 79.7
Thecc.04G011100 Theobroma cacao HOM05D006084 ORTHO05D007449 4.7e-48 194.5 118 79.7
GSVIVG01032459001 Vitis vinifera HOM05D006084 ORTHO05D007449 6.1e-48 194.1 121 79.3
CsaV3_5G027340 Cucumis sativus L. HOM05D006084 ORTHO05D007449 8.0e-48 193.7 118 78.0
Medtr3g088470 Medicago truncatula HOM05D006084 ORTHO05D007449 8.0e-48 193.7 118 78.0
Potri.001G349500 Populus trichocarpa HOM05D006084 ORTHO05D007449 8.0e-48 193.7 118 78.0
CANSAT64G0964 Cannabis sativa HOM05D006084 ORTHO05D007449 1.0e-47 193.4 119 79.0
Sed0018290 Sechium edule HOM05D006084 ORTHO05D007449 1.8e-47 192.6 118 78.0
MELO3C005689.2 Cucumis melo HOM05D006084 ORTHO05D007449 2.3e-47 192.2 118 78.8
ECA238G3069 Erigeron canadensis HOM05D006084 ORTHO05D007449 2.3e-47 192.2 119 79.8
A02p02680 Brassica napus HOM05D006084 ORTHO05D007449 8.8e-47 190.3 119 76.5
BraA02t05237Z Brassica rapa HOM05D006084 ORTHO05D007449 8.8e-47 190.3 119 76.5
Lalb_Chr10g0093921 Lupinus albus HOM05D006084 ORTHO05D007449 8.8e-47 190.3 118 78.0
Sp6g29330 Schrenkiella parvula HOM05D006084 ORTHO05D007449 8.8e-47 190.3 119 76.5
Hund02345 Selenicereus undatus HOM05D006084 ORTHO05D007449 1.2e-46 189.9 119 73.9
Sopen02g031550 Solanum pennellii HOM05D006084 ORTHO05D007449 1.2e-46 189.9 117 77.8
ATR0730G058 Amborella trichopoda HOM05D006084 ORTHO05D007449 2.0e-46 189.1 118 74.6
Thhalv10015025m.g Eutrema salsugineum HOM05D006084 ORTHO05D007449 2.0e-46 189.1 119 76.5
ATR1096G027 Amborella trichopoda HOM05D006084 ORTHO05D007449 2.6e-46 188.7 117 73.5
BcaNung03101 Brassica carinata HOM05D006084 ORTHO05D007449 2.6e-46 188.7 119 75.6
PSO210G7688 Papaver somniferum HOM05D006084 ORTHO05D007449 2.6e-46 188.7 119 75.6
A03p06720 Brassica napus HOM05D006084 ORTHO05D007449 4.4e-46 188.0 119 74.8
Cc07_g02120 Coffea canephora HOM05D006084 ORTHO05D007449 4.4e-46 188.0 118 75.4
PSO782G1469 Papaver somniferum HOM05D006084 ORTHO05D007449 4.4e-46 188.0 119 76.5
BraA03t10005Z Brassica rapa HOM05D006084 ORTHO05D007449 5.7e-46 187.6 119 74.8
Carub.0006s1288 Capsella rubella HOM05D006084 ORTHO05D007449 7.5e-46 187.2 119 74.8
Glyma.04G247000 Glycine max HOM05D006084 ORTHO05D007449 7.5e-46 187.2 118 75.4
PSO566G0352 Papaver somniferum HOM05D006084 ORTHO05D007449 9.8e-46 186.8 118 74.6
TPR.G13476 Trifolium pratense HOM05D006084 ORTHO05D007449 9.8e-46 186.8 118 76.3
TWI12G0619 Tripterygium wilfordii HOM05D006084 ORTHO05D007449 1.3e-45 186.4 119 77.3
CARHR198600 Cardamine hirsuta HOM05D006084 ORTHO05D007449 2.2e-45 185.7 119 73.9
Glyma.06G115700 Glycine max HOM05D006084 ORTHO05D007449 2.2e-45 185.7 118 73.7
Aa31LG11G14750 Aethionema arabicum HOM05D006084 ORTHO05D007449 2.8e-45 185.3 119 75.6
COL.COLO4_28991 Corchorus olitorius HOM05D006084 ORTHO05D007449 2.8e-45 185.3 136 69.1
AT5G14710 Arabidopsis thaliana HOM05D006084 ORTHO05D007449 3.7e-45 184.9 119 73.9
BcaB01g05101 Brassica carinata HOM05D006084 ORTHO05D007449 3.7e-45 184.9 119 73.9
C03p07740 Brassica napus HOM05D006084 ORTHO05D007449 3.7e-45 184.9 119 73.9
BolC3t13274H Brassica oleracea HOM05D006084 ORTHO05D007449 3.7e-45 184.9 119 73.9
BcaC03g13452 Brassica carinata HOM05D006084 ORTHO05D007449 4.8e-45 184.5 119 73.9
C02p07250 Brassica napus HOM05D006084 ORTHO05D007449 4.8e-45 184.5 119 73.9
BolC2t06657H Brassica oleracea HOM05D006084 ORTHO05D007449 4.8e-45 184.5 119 73.9
THA.LOC104821076 Tarenaya hassleriana HOM05D006084 ORTHO05D007449 4.8e-45 184.5 119 73.1
Phvul.009G127800 Phaseolus vulgaris HOM05D006084 ORTHO05D007449 6.3e-45 184.1 118 74.6
AL6G25480 Arabidopsis lyrata HOM05D006084 ORTHO05D007449 8.3e-45 183.7 119 73.9
Lj1g0023236 Lotus japonicus HOM05D006084 ORTHO05D007449 1.8e-44 182.6 118 72.9
Sc03g0007970 Simmondsia chinensis HOM05D006084 ORTHO05D007449 2.4e-44 182.2 118 69.5
Hma1.2p1_0056F.1_g031653 Hydrangea macrophylla HOM05D006084 ORTHO05D007449 3.1e-44 181.8 105 82.9
BcaC04g19017 Brassica carinata HOM05D006084 ORTHO05D007449 5.4e-44 181.0 112 77.7
FAN09G3162 Fragaria x ananassa HOM05D006084 ORTHO05D007449 1.2e-43 179.9 122 76.2
Hma1.2p1_1415F.1_g281960 Hydrangea macrophylla HOM05D006084 ORTHO05D007449 1.6e-43 179.5 105 82.9
arahy.Tifrunner.gnm1.ann1.DMWP0X Arachis hypogaea HOM05D006084 ORTHO05D007449 2.0e-43 179.1 118 75.4
ClCG09G019010 Citrullus lanatus HOM05D006084 ORTHO05D007449 3.5e-43 178.3 140 65.0
Os10g0395500 Oryza sativa ssp. japonica HOM05D006084 ORTHO05D007449 4.5e-43 177.9 118 70.3
arahy.Tifrunner.gnm1.ann1.2LS7ZQ Arachis hypogaea HOM05D006084 ORTHO05D007449 5.9e-43 177.6 118 74.6
Migut.H00108 Erythranthe guttata HOM05D006084 ORTHO05D007449 1.0e-42 176.8 113 75.2
HPP92_022049 Vanilla planifolia HOM05D006084 ORTHO05D007449 1.0e-42 176.8 119 70.6
Peaxi162Scf00129g01228 Petunia axillaris HOM05D006084 ORTHO05D007449 1.7e-42 176.0 105 78.1
arahy.Tifrunner.gnm1.ann1.48HX9C Arachis hypogaea HOM05D006084 ORTHO05D007449 2.2e-42 175.6 118 73.7
Gorai.001G262800 Gossypium raimondii HOM05D006084 ORTHO05D007449 6.5e-42 174.1 101 81.2
MSTRG.3166 Avicennia marina HOM05D006084 ORTHO05D007449 1.1e-41 173.3 112 71.4
ClCG00G003490 Citrullus lanatus HOM05D006084 ORTHO05D007449 1.1e-41 173.3 138 64.5
Oeu004718.1 Olea europaea HOM05D006084 ORTHO05D007449 2.5e-41 172.2 113 75.2
C09p62430 Brassica napus HOM05D006084 ORTHO05D007449 4.7e-40 167.9 101 78.2
Zm00001eb048120 Zea mays HOM05D006084 ORTHO05D007449 6.1e-40 167.5 118 67.8
Lsat_1_v5_gn_2_91880 Lactuca sativa HOM05D006084 ORTHO05D007449 1.8e-39 166.0 119 71.4
MBI19_g17406_MAGBIO Magnolia biondii HOM05D006084 ORTHO05D007449 1.8e-39 166.0 128 65.6
unitig_746.g26552 Utricularia gibba HOM05D006084 ORTHO05D007449 3.0e-39 165.2 111 70.3
arahy.Tifrunner.gnm1.ann1.GQ5XJ3 Arachis hypogaea HOM05D006084 ORTHO05D007449 5.2e-39 164.5 135 63.7
EL10Ac3g07214 Beta vulgaris HOM05D006084 ORTHO05D007449 5.2e-39 164.5 113 69.9
BolC9t59081H Brassica oleracea HOM05D006084 ORTHO05D007449 1.2e-38 163.3 101 76.2
MBI19_g07248_MAGBIO Magnolia biondii HOM05D006084 ORTHO05D007449 5.7e-38 161.0 130 64.6
Nn3g16859 Nelumbo nucifera HOM05D006084 ORTHO05D007449 5.7e-38 161.0 118 69.5
SGA_v2.0_scaffold2848G54225 Striga asiatica HOM05D006084 ORTHO05D007449 4.9e-37 157.9 113 66.4
Sabra16G0228900 Salix brachista HOM05D006084 ORTHO05D007449 7.0e-36 154.1 210 44.3
Mapoly0005s0179 Marchantia polymorpha HOM05D006084 ORTHO05D007449 1.2e-35 153.3 121 61.2
AUR62031990 Chenopodium quinoa HOM05D006084 ORTHO05D007449 7.8e-35 150.6 118 64.4
Pp3c26_1260 Physcomitrium patens HOM05D006084 ORTHO05D007449 8.6e-34 147.1 128 55.5
SHI16396 Sapria himalayana HOM05D006084 ORTHO05D007449 4.3e-33 144.8 101 64.4
Nitab4.5_0007141g0020 Nicotiana tabacum HOM05D006084 ORTHO05D007449 9.5e-33 143.7 107 66.4
Cpa.g.c30698.2 Carica papaya HOM05D006084 ORTHO05D007449 3.6e-32 141.7 88 77.3
Duzib264G1216 Durio zibethinus HOM05D006084 ORTHO05D007449 1.0e-31 140.2 82 79.3
SMO367G0706 Selaginella moellendorffii HOM05D006084 ORTHO05D007449 1.3e-29 133.3 103 63.1
Solyc02g086780.4 Solanum lycopersicum HOM05D006084 ORTHO05D007449 3.7e-29 131.7 81 79.0
DCAR_011237 Daucus carota HOM05D006084 ORTHO05D007449 8.3e-29 130.6 108 63.9
Ciclev10017692m.g Citrus clementina HOM05D006084 ORTHO05D007449 3.0e-26 122.1 68 80.9
AUR62030334 Chenopodium quinoa HOM05D006084 ORTHO05D007449 9.5e-25 117.1 67 77.6
Nitab4.5_0006281g0070 Nicotiana tabacum HOM05D006084 ORTHO05D007449 1.2e-24 116.7 77 72.7
CBR_g5628 Chara braunii HOM05D006084 ORTHO05D007449 2.1e-24 115.9 124 47.6
Ca_03224_v3 Cicer arietinum L. HOM05D006084 ORTHO05D007449 3.1e-23 112.1 67 76.1
MELO3C033557.2 Cucumis melo HOM05D006084 ORTHO05D007449 9.8e-22 107.1 172 40.7
BraA10t44460Z Brassica rapa HOM05D006084 ORTHO05D007449 2.9e-21 105.5 89 61.8
AagrBONN_evm.TU.Sc2ySwM_228.3157 Anthoceros agrestis HOM05D006084 ORTHO05D007449 2.4e-20 102.4 81 55.6
Os01g0339600 Oryza sativa ssp. japonica HOM05D006084 ORTHO05D007449 3.0e-18 95.5 70 64.3
arahy.Tifrunner.gnm1.ann1.2H702Y Arachis hypogaea HOM05D006084 ORTHO05D007449 4.3e-17 91.7 61 70.5
Cre13.g571000 Chlamydomonas reinhardtii HOM05D006084 ORTHO05D007449 4.3e-17 91.7 117 38.5
Dinv35076 Davidia involucrata HOM05D006084 ORTHO05D007449 3.4e-14 82.0 45 82.2
A10p23960 Brassica napus HOM05D006084 ORTHO05D007449 9.2e-12 73.9 131 39.7
SEGI_25092 Sequoiadendron giganteum HOM05D006084 ORTHO05D007449 1.6e-11 73.2 46 67.4
MCO07G269 Micromonas commoda HOM05D006084 ORTHO05D007449 6.8e-07 57.8 106 32.1


User provided reference genes

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