Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G279900 Prunus persica HOM05D005889 ORTHO05D007495 1.8e-74 282.7 167 100.0
MD17G1039100 Malus domestica HOM05D005889 ORTHO05D007495 3.1e-58 228.8 178 74.7
FvH4_6g50270 Fragaria vesca HOM05D005889 ORTHO05D007495 2.5e-47 192.6 178 71.9
FAN14G2248 Fragaria x ananassa HOM05D005889 ORTHO05D007495 2.5e-47 192.6 178 71.9
FAN05G0142 Fragaria x ananassa HOM05D005889 ORTHO05D007495 1.3e-45 186.8 180 66.1
FAN02G1209 Fragaria x ananassa HOM05D005889 ORTHO05D007495 3.0e-45 185.7 180 70.6
FAN09G4317 Fragaria x ananassa HOM05D005889 ORTHO05D007495 5.1e-45 184.9 180 66.1
RcHm_v2.0_Chr2g0170581 Rosa chinensis HOM05D005889 ORTHO05D007495 4.5e-41 171.8 186 65.1
CSS0022009 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 8.2e-35 151.0 122 68.0
Eucgr.J02175 Eucalyptus grandis HOM05D005889 ORTHO05D007495 3.1e-34 149.1 97 82.5
Rhsim10G0026400 Rhododendron simsii HOM05D005889 ORTHO05D007495 5.3e-34 148.3 169 56.8
Rhsim10G0026900 Rhododendron simsii HOM05D005889 ORTHO05D007495 1.2e-33 147.1 169 56.2
Sed0023571 Sechium edule HOM05D005889 ORTHO05D007495 1.2e-33 147.1 137 60.6
Actinidia06039 Actinidia chinensis HOM05D005889 ORTHO05D007495 2.6e-33 146.0 180 52.2
A02p02770 Brassica napus HOM05D005889 ORTHO05D007495 2.6e-33 146.0 179 52.0
Potri.001G350500 Populus trichocarpa HOM05D005889 ORTHO05D007495 2.6e-33 146.0 184 53.8
DCAR_011198 Daucus carota HOM05D005889 ORTHO05D007495 5.9e-33 144.8 112 74.1
PGSC0003DMG400000508 Solanum tuberosum HOM05D005889 ORTHO05D007495 5.9e-33 144.8 156 55.8
Manes.17G118700 Manihot esculenta HOM05D005889 ORTHO05D007495 7.7e-33 144.4 198 53.0
CARHR198430 Cardamine hirsuta HOM05D005889 ORTHO05D007495 1.3e-32 143.7 150 58.7
Ciclev10012884m.g Citrus clementina HOM05D005889 ORTHO05D007495 1.3e-32 143.7 121 67.8
Nn4g22882 Nelumbo nucifera HOM05D005889 ORTHO05D007495 1.3e-32 143.7 130 60.0
CANSAT64G0610 Cannabis sativa HOM05D005889 ORTHO05D007495 1.7e-32 143.3 127 66.9
Cfa007463 Carpinus fangiana HOM05D001690 ORTHO05D002627 2.2e-32 142.9 93 81.7
QL02p077702 Quercus lobata HOM05D005889 ORTHO05D007495 2.2e-32 142.9 190 54.7
CAN.G206.53 Capsicum annuum HOM05D005889 ORTHO05D007495 3.8e-32 142.1 97 79.4
Migut.K01361 Erythranthe guttata HOM05D005889 ORTHO05D007495 3.8e-32 142.1 95 78.9
CiPaw.03G035200 Carya illinoinensis HOM05D005889 ORTHO05D007495 5.0e-32 141.7 95 80.0
Nitab4.5_0001952g0130 Nicotiana tabacum HOM05D005889 ORTHO05D007495 6.5e-32 141.4 98 76.5
THA.LOC104821069 Tarenaya hassleriana HOM05D005889 ORTHO05D007495 6.5e-32 141.4 108 71.3
Hma1.2p1_0697F.1_g204970 Hydrangea macrophylla HOM05D005889 ORTHO05D007495 8.5e-32 141.0 117 70.1
Sopen02g031900 Solanum pennellii HOM05D005889 ORTHO05D007495 1.1e-31 140.6 156 55.1
TAR371G1159 Trochodendron aralioides HOM05D005889 ORTHO05D007495 1.4e-31 140.2 127 64.6
CANSAT64G2621 Cannabis sativa HOM05D005889 ORTHO05D007495 1.9e-31 139.8 126 65.9
SalBow1G5017 Salvia bowleyana HOM05D005889 ORTHO05D007495 1.9e-31 139.8 117 67.5
Phvul.004G019800 Phaseolus vulgaris HOM05D005889 ORTHO05D007495 2.5e-31 139.4 137 59.1
Solyc02g087150.3 Solanum lycopersicum HOM05D005889 ORTHO05D007495 2.5e-31 139.4 156 54.5
VMungo0464G2061 Vigna mungo HOM05D001690 ORTHO05D002627 2.5e-31 139.4 106 71.7
BcaNung05888 Brassica carinata HOM05D005889 ORTHO05D007495 4.2e-31 138.7 96 75.0
C02p07380 Brassica napus HOM05D005889 ORTHO05D007495 4.2e-31 138.7 96 75.0
BolC2t06669H Brassica oleracea HOM05D005889 ORTHO05D007495 4.2e-31 138.7 96 75.0
Manes.15G180360 Manihot esculenta HOM05D005889 ORTHO05D007495 4.2e-31 138.7 151 57.6
arahy.Tifrunner.gnm1.ann1.LQS8H1 Arachis hypogaea HOM05D005889 ORTHO05D007495 5.5e-31 138.3 92 79.3
arahy.Tifrunner.gnm1.ann1.XH0R3V Arachis hypogaea HOM05D005889 ORTHO05D007495 5.5e-31 138.3 92 79.3
Lsat_1_v5_gn_2_92760 Lactuca sativa HOM05D005889 ORTHO05D007495 5.5e-31 138.3 163 54.0
Sabra16G0230000 Salix brachista HOM05D005889 ORTHO05D007495 5.5e-31 138.3 185 53.0
AT5G14910 Arabidopsis thaliana HOM05D005889 ORTHO05D007495 9.4e-31 137.5 103 69.9
MSTRG.15501 Avicennia marina HOM05D005889 ORTHO05D007495 9.4e-31 137.5 102 72.5
BcaB01g05094 Brassica carinata HOM05D005889 ORTHO05D007495 9.4e-31 137.5 99 71.7
Carub.0006s1306 Capsella rubella HOM05D005889 ORTHO05D007495 9.4e-31 137.5 99 72.7
Ca_04220_v3 Cicer arietinum L. HOM05D005889 ORTHO05D007495 9.4e-31 137.5 98 73.5
COL.COLO4_32001 Corchorus olitorius HOM05D005889 ORTHO05D007495 1.2e-30 137.1 106 69.8
BcaNung03088 Brassica carinata HOM05D005889 ORTHO05D007495 1.6e-30 136.7 97 73.2
Gorai.001G259800 Gossypium raimondii HOM05D005889 ORTHO05D007495 1.6e-30 136.7 183 50.3
Glyma.13G070100 Glycine max HOM05D005889 ORTHO05D007495 2.1e-30 136.3 123 62.6
Thecc.04G004200 Theobroma cacao HOM05D005889 ORTHO05D007495 2.1e-30 136.3 197 47.7
Gohir.D07G225400 Gossypium hirsutum HOM05D005889 ORTHO05D007495 2.7e-30 136.0 183 50.3
Cc07_g02540 Coffea canephora HOM05D005889 ORTHO05D007495 3.6e-30 135.6 98 73.5
CsaV3_3G042070 Cucumis sativus L. HOM05D005889 ORTHO05D007495 3.6e-30 135.6 125 61.6
TWI56G0856 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 4.7e-30 135.2 186 51.1
A03p06840 Brassica napus HOM05D005889 ORTHO05D007495 6.1e-30 134.8 93 75.3
C03p07840 Brassica napus HOM05D005889 ORTHO05D007495 6.1e-30 134.8 95 73.7
BraA03t10009Z Brassica rapa HOM05D005889 ORTHO05D007495 6.1e-30 134.8 93 75.3
MELO3C009927.2 Cucumis melo HOM05D005889 ORTHO05D007495 6.1e-30 134.8 125 61.6
Lj2g0018244 Lotus japonicus HOM05D005889 ORTHO05D007495 6.1e-30 134.8 107 66.4
BolC3t13283H Brassica oleracea HOM05D005889 ORTHO05D007495 7.9e-30 134.4 95 72.6
AUR62032095 Chenopodium quinoa HOM05D005889 ORTHO05D007495 1.0e-29 134.0 180 49.4
Thhalv10014795m.g Eutrema salsugineum HOM05D005889 ORTHO05D007495 1.0e-29 134.0 111 64.9
PGR083G2278 Punica granatum HOM05D005889 ORTHO05D007495 1.0e-29 134.0 176 52.3
Atru.chr8.2424 Acer truncatum HOM05D005889 ORTHO05D007495 1.8e-29 133.3 107 68.2
BraA02t05248Z Brassica rapa HOM05D005889 ORTHO05D007495 1.8e-29 133.3 181 49.2
Glyma.19G012900 Glycine max HOM05D005889 ORTHO05D007495 1.8e-29 133.3 123 60.2
Ah.16g106950 Amaranthus hybridus HOM05D005889 ORTHO05D007495 2.3e-29 132.9 122 58.2
SGA_v2.0_scaffold205G41723 Striga asiatica HOM05D005889 ORTHO05D007495 2.3e-29 132.9 97 74.2
Peaxi162Scf00129g00825 Petunia axillaris HOM05D005889 ORTHO05D007495 3.0e-29 132.5 92 77.2
THA.LOC104822380 Tarenaya hassleriana HOM05D005889 ORTHO05D007495 3.9e-29 132.1 96 71.9
Aqoxy3G03079 Aquilegia oxysepala HOM05D005889 ORTHO05D007495 5.1e-29 131.7 147 55.8
ECA238G1302 Erigeron canadensis HOM05D005889 ORTHO05D007495 5.1e-29 131.7 110 68.2
HanXRQChr12g0385561 Helianthus annuus HOM05D005889 ORTHO05D007495 6.7e-29 131.3 94 75.5
Sed0001958 Sechium edule HOM05D005889 ORTHO05D007495 1.1e-28 130.6 111 64.9
Sc20g0002790 Simmondsia chinensis HOM05D005889 ORTHO05D007495 1.5e-28 130.2 120 63.3
CDE01G0491 Ceratophyllum demersum HOM05D005889 ORTHO05D007495 2.0e-28 129.8 112 66.1
MBI14_g19739_MAGBIO Magnolia biondii HOM05D005889 ORTHO05D007495 2.0e-28 129.8 120 61.7
PSO832G3377 Papaver somniferum HOM05D005889 ORTHO05D007495 2.6e-28 129.4 115 62.6
vmacro05795 Vaccinium macrocarpon HOM05D005889 ORTHO05D007495 3.3e-28 129.0 173 51.4
CSS0028338 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 7.4e-28 127.9 161 52.2
PSO063G7534 Papaver somniferum HOM05D005889 ORTHO05D007495 7.4e-28 127.9 157 50.3
Sp6g29140 Schrenkiella parvula HOM05D005889 ORTHO05D007495 7.4e-28 127.9 91 72.5
Lj7C409T13 Lonicera japonica HOM05D005889 ORTHO05D007495 1.3e-27 127.1 133 57.9
Psat1g080040 Pisum sativum HOM05D005889 ORTHO05D007495 1.3e-27 127.1 130 55.4
TWI56G0985 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 1.3e-27 127.1 184 49.5
unitig_21.g20501 Utricularia gibba HOM05D005889 ORTHO05D007495 1.3e-27 127.1 109 66.1
CSS0046645 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 1.7e-27 126.7 161 51.6
Duzib147G1282 Durio zibethinus HOM05D005889 ORTHO05D007495 1.7e-27 126.7 147 54.4
HanXRQChr14g0448791 Helianthus annuus HOM05D005889 ORTHO05D007495 1.7e-27 126.7 113 66.4
Medtr6g007887 Medicago truncatula HOM05D005889 ORTHO05D007495 2.2e-27 126.3 175 48.0
ClCG10G014500 Citrullus lanatus HOM05D005889 ORTHO05D007495 3.7e-27 125.6 97 69.1
Oeu047335.1 Olea europaea HOM05D005889 ORTHO05D007495 3.7e-27 125.6 119 63.0
Hund20036 Selenicereus undatus HOM05D005889 ORTHO05D007495 4.8e-27 125.2 173 47.4
Aa31LG11G14590 Aethionema arabicum HOM05D005889 ORTHO05D007495 6.3e-27 124.8 188 46.8
GSVIVG01032527001 Vitis vinifera HOM05D005889 ORTHO05D007495 8.2e-27 124.4 82 80.5
CDE02G1560 Ceratophyllum demersum HOM05D005889 ORTHO05D007495 1.4e-26 123.6 112 64.3
TWI12G0403 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 1.8e-26 123.2 180 46.7
Nitab4.5_0005206g0020 Nicotiana tabacum HOM05D005889 ORTHO05D007495 2.0e-25 119.8 103 66.0
MBI14_g42400_MAGBIO Magnolia biondii HOM05D005889 ORTHO05D007495 3.8e-24 115.5 151 50.3
EL10Ac2g03378 Beta vulgaris HOM05D005889 ORTHO05D007495 1.9e-23 113.2 77 75.3
BcaB01g05020 Brassica carinata HOM05D005889 ORTHO05D007495 1.8e-21 106.7 119 53.8
Lalb_Chr21g0319321 Lupinus albus HOM05D000340 ORTHO05D000821 4.4e-20 102.1 80 67.5
Peaxi162Scf00700g00623 Petunia axillaris HOM05D005889 ORTHO05D007495 1.7e-19 100.1 72 72.2
Os05g0337400 Oryza sativa ssp. japonica HOM05D005889 ORTHO05D007495 2.2e-19 99.8 94 57.4
Zm00001eb286710 Zea mays HOM05D005889 ORTHO05D007495 2.8e-19 99.4 94 56.4
ATR0787G083 Amborella trichopoda HOM05D005889 ORTHO05D007495 1.1e-18 97.4 73 69.9
Pp3c10_16560 Physcomitrium patens HOM05D005889 ORTHO05D007495 4.1e-18 95.5 86 55.8
Mapoly0034s0091 Marchantia polymorpha HOM05D005889 ORTHO05D007495 1.2e-17 94.0 105 52.4
Pp3c1_25290 Physcomitrium patens HOM05D005889 ORTHO05D007495 7.7e-17 91.3 86 55.8
Pp3c2_14600 Physcomitrium patens HOM05D005889 ORTHO05D007495 2.2e-16 89.7 122 43.4
Rhsim10G0027100 Rhododendron simsii HOM05D005889 ORTHO05D007495 9.4e-15 84.3 58 77.6
RcHm_v2.0_Chr2g0170541 Rosa chinensis HOM05D005889 ORTHO05D007495 1.2e-14 84.0 62 80.6
AL6G25690 Arabidopsis lyrata HOM05D005889 ORTHO05D007495 1.0e-13 80.9 61 65.6
SEGI_28638 Sequoiadendron giganteum HOM05D005889 ORTHO05D007495 5.2e-13 78.6 112 46.4
SMO119G0369 Selaginella moellendorffii HOM05D003366 ORTHO05D004045 7.5e-12 74.7 109 33.9
CSS0042844 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 9.7e-12 74.3 61 72.1
Gohir.A07G218300 Gossypium hirsutum HOM05D005889 ORTHO05D007495 1.8e-10 70.1 141 39.0
TPR.G132 Trifolium pratense HOM05D005889 ORTHO05D007495 5.9e-09 65.1 43 76.7
SMO163G0046 Selaginella moellendorffii HOM05D003366 ORTHO05D004045 1.1e-07 60.8 85 34.1
Cpa.g.sc286.7 Carica papaya HOM05D005889 ORTHO05D007495 1.5e-07 60.5 114 38.6
Dinv35030 Davidia involucrata HOM05D005889 ORTHO05D007495 3.2e-07 59.3 83 50.6
Nn3g16976 Nelumbo nucifera HOM05D005889 ORTHO05D007495 3.2e-07 59.3 54 59.3
HPP92_014818 Vanilla planifolia HOM05D005889 ORTHO05D007495 9.4e-07 57.8 68 51.5
AagrBONN_evm.TU.Sc2ySwM_368.656 Anthoceros agrestis HOM05D005889 ORTHO05D007495 4.7e-06 55.5 70 42.9


User provided reference genes

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