Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G278300 Prunus persica HOM05D005581 ORTHO05D006792 3.5e-123 444.9 215 100.0
MD17G1040700 Malus domestica HOM05D005581 ORTHO05D006792 1.8e-98 362.8 212 82.5
RcHm_v2.0_Chr2g0170291 Rosa chinensis HOM05D005581 ORTHO05D006792 1.8e-95 352.8 210 82.9
FAN05G2284 Fragaria x ananassa HOM05D005581 ORTHO05D006792 3.4e-94 348.6 211 81.0
FvH4_6g50030 Fragaria vesca HOM05D005581 ORTHO05D006792 5.9e-94 347.8 211 81.5
FAN09G0871 Fragaria x ananassa HOM05D005581 ORTHO05D006792 5.5e-92 341.3 203 82.8
GSVIVG01032543001 Vitis vinifera HOM05D005581 ORTHO05D006792 2.1e-91 339.3 210 77.6
FAN14G0942 Fragaria x ananassa HOM05D005581 ORTHO05D006792 2.7e-91 339.0 203 82.3
Cfa007475 Carpinus fangiana HOM05D005581 ORTHO05D006792 1.1e-89 333.6 210 74.8
TAR629G0716 Trochodendron aralioides HOM05D005581 ORTHO05D006792 4.8e-88 328.2 211 73.9
CiPaw.04G022300 Carya illinoinensis HOM05D005581 ORTHO05D006792 1.4e-87 326.6 211 72.5
QL02p078462 Quercus lobata HOM05D005581 ORTHO05D006792 5.3e-87 324.7 207 75.4
Manes.15G178800 Manihot esculenta HOM05D005581 ORTHO05D006792 3.5e-86 322.0 201 76.1
PGR083G1021 Punica granatum HOM05D005581 ORTHO05D006792 4.5e-86 321.6 193 75.1
Dinv33676 Davidia involucrata HOM05D005581 ORTHO05D006792 2.2e-85 319.3 210 71.9
Actinidia36059 Actinidia chinensis HOM05D005581 ORTHO05D006792 1.6e-83 313.2 203 73.4
Nn3g17019 Nelumbo nucifera HOM05D005581 ORTHO05D006792 1.6e-83 313.2 190 78.4
Ciclev10012718m.g Citrus clementina HOM05D005581 ORTHO05D006792 4.7e-83 311.6 218 69.7
Potri.001G470300 Populus trichocarpa HOM05D005581 ORTHO05D006792 4.7e-83 311.6 200 74.5
MELO3C033644.2 Cucumis melo HOM05D005581 ORTHO05D006792 1.8e-82 309.7 202 70.3
Sed0016453 Sechium edule HOM05D005581 ORTHO05D006792 2.3e-82 309.3 197 72.6
CsaV3_5G037490 Cucumis sativus L. HOM05D005581 ORTHO05D006792 5.2e-82 308.1 201 70.1
CSS0034562 Camellia sinensis var. sinensis HOM05D005581 ORTHO05D006792 6.7e-82 307.8 201 72.1
CSS0041908 Camellia sinensis var. sinensis HOM05D005581 ORTHO05D006792 6.7e-82 307.8 201 72.1
TPR.G39154 Trifolium pratense HOM05D005581 ORTHO05D006792 1.1e-81 307.0 186 75.8
Eucgr.J02171 Eucalyptus grandis HOM05D005581 ORTHO05D006792 2.0e-81 306.2 195 72.3
Medtr7g030020 Medicago truncatula HOM05D005581 ORTHO05D006792 2.0e-81 306.2 209 69.4
Medtr7g038730 Medicago truncatula HOM05D005581 ORTHO05D006792 2.0e-81 306.2 209 69.4
Hund12510 Selenicereus undatus HOM05D005581 ORTHO05D006792 3.3e-81 305.4 189 76.7
Lj2g0014392 Lotus japonicus HOM05D005581 ORTHO05D006792 4.4e-81 305.1 198 74.2
Hma1.2p1_1975F.1_g309690 Hydrangea macrophylla HOM05D005581 ORTHO05D006792 1.3e-80 303.5 192 74.5
Actinidia06044 Actinidia chinensis HOM05D005581 ORTHO05D006792 3.7e-80 302.0 203 70.9
Sabra16G0319200 Salix brachista HOM05D005581 ORTHO05D006792 3.7e-80 302.0 186 76.3
Thecc.04G002800 Theobroma cacao HOM05D005581 ORTHO05D006792 4.8e-80 301.6 210 69.5
Oeu031508.1 Olea europaea HOM05D005581 ORTHO05D006792 1.4e-79 300.1 216 70.8
MBI15_g35865_MAGBIO Magnolia biondii HOM05D005581 ORTHO05D006792 1.8e-79 299.7 175 81.1
Sc06g0002610 Simmondsia chinensis HOM05D005581 ORTHO05D006792 1.8e-79 299.7 191 73.8
Lalb_Chr05g0228941 Lupinus albus HOM05D005581 ORTHO05D006792 2.4e-79 299.3 212 68.9
COL.COLO4_06153 Corchorus olitorius HOM05D000793 ORTHO05D000783 7.0e-79 297.7 199 71.4
Phvul.003G125600 Phaseolus vulgaris HOM05D005581 ORTHO05D006792 7.0e-79 297.7 191 73.8
TWI12G0742 Tripterygium wilfordii HOM05D005581 ORTHO05D006792 7.0e-79 297.7 202 70.8
Cpa.g.sc14.80 Carica papaya HOM05D005581 ORTHO05D006792 2.0e-78 296.2 211 68.7
Ciclev10016724m.g Citrus clementina HOM05D005581 ORTHO05D006792 2.0e-78 296.2 206 70.4
PSO591G0467 Papaver somniferum HOM05D005581 ORTHO05D006792 2.0e-78 296.2 195 72.8
Glyma.13G116200 Glycine max HOM05D005581 ORTHO05D006792 2.7e-78 295.8 197 70.6
Lj2g0006948 Lotus japonicus HOM05D005581 ORTHO05D006792 2.7e-78 295.8 171 80.1
MD09G1040100 Malus domestica HOM05D005581 ORTHO05D006792 2.7e-78 295.8 312 53.5
VMungo1215G0614 Vigna mungo HOM05D005581 ORTHO05D006792 2.7e-78 295.8 211 68.2
Nitab4.5_0004905g0030 Nicotiana tabacum HOM05D000793 ORTHO05D006792 5.9e-78 294.7 197 72.1
Duzib147G0516 Durio zibethinus HOM05D005581 ORTHO05D006792 1.0e-77 293.9 210 68.1
Duzib187G0556 Durio zibethinus HOM05D005581 ORTHO05D006792 1.0e-77 293.9 199 71.9
RhsimUnG0168100 Rhododendron simsii HOM05D005581 ORTHO05D006792 1.0e-77 293.9 192 72.4
Nitab4.5_0007185g0080 Nicotiana tabacum HOM05D005581 ORTHO05D006792 1.3e-77 293.5 194 73.2
Peaxi162Scf00129g00828 Petunia axillaris HOM05D000793 ORTHO05D000783 1.7e-77 293.1 204 71.1
Hma1.2p1_0375F.1_g139010 Hydrangea macrophylla HOM05D005581 ORTHO05D006792 2.2e-77 292.7 210 65.7
Oeu062376.1 Olea europaea HOM05D005581 ORTHO05D006792 2.9e-77 292.4 204 70.6
ATR0624G029 Amborella trichopoda HOM05D005581 ORTHO05D006792 3.8e-77 292.0 192 71.9
Lalb_Chr21g0319231 Lupinus albus HOM05D005581 ORTHO05D006792 5.0e-77 291.6 204 69.1
ClCG00G001710 Citrullus lanatus HOM05D005581 ORTHO05D006792 6.5e-77 291.2 214 65.4
ClCG09G018630 Citrullus lanatus HOM05D005581 ORTHO05D006792 6.5e-77 291.2 214 65.4
CAN.G206.63 Capsicum annuum HOM05D005581 ORTHO05D006792 8.5e-77 290.8 203 70.4
arahy.Tifrunner.gnm1.ann1.2M0NJC Arachis hypogaea HOM05D005581 ORTHO05D006792 1.1e-76 290.4 208 67.3
PGSC0003DMG400001392 Solanum tuberosum HOM05D005581 ORTHO05D006792 1.5e-76 290.0 199 68.8
Ca_19611_v3 Cicer arietinum L. HOM05D005581 ORTHO05D006792 1.9e-76 289.7 175 77.7
PSO832G0275 Papaver somniferum HOM05D005581 ORTHO05D006792 1.9e-76 289.7 198 69.2
arahy.Tifrunner.gnm1.ann1.E9CGF1 Arachis hypogaea HOM05D005581 ORTHO05D006792 3.2e-76 288.9 208 67.3
Gohir.D07G224600 Gossypium hirsutum HOM05D005581 ORTHO05D006792 3.2e-76 288.9 198 68.2
Sopen02g032000 Solanum pennellii HOM05D005581 ORTHO05D006792 3.2e-76 288.9 199 68.8
Solyc02g087250.4 Solanum lycopersicum HOM05D000793 ORTHO05D000783 7.2e-76 287.7 192 70.8
Gohir.A07G217500 Gossypium hirsutum HOM05D005581 ORTHO05D006792 9.4e-76 287.3 198 67.7
PSO063G2781 Papaver somniferum HOM05D005581 ORTHO05D006792 1.6e-75 286.6 205 65.9
Aqoxy3G03110 Aquilegia oxysepala HOM05D005581 ORTHO05D006792 2.1e-75 286.2 202 67.8
HPP92_026859 Vanilla planifolia HOM05D005581 ORTHO05D006792 3.6e-75 285.4 187 70.1
MSTRG.23979 Avicennia marina HOM05D005581 ORTHO05D006792 6.1e-75 284.6 211 66.8
CDE06G0044 Ceratophyllum demersum HOM05D005581 ORTHO05D006792 6.1e-75 284.6 166 76.5
Atru.BG.224.p Acer truncatum HOM05D005581 ORTHO05D006792 1.0e-74 283.9 165 80.6
arahy.Tifrunner.gnm1.ann1.B679M5 Arachis hypogaea HOM05D005581 ORTHO05D006792 1.0e-74 283.9 203 69.5
EL10Ac7g18001 Beta vulgaris HOM05D005581 ORTHO05D006792 1.8e-74 283.1 194 70.6
arahy.Tifrunner.gnm1.ann1.UYM2HQ Arachis hypogaea HOM05D005581 ORTHO05D006792 3.0e-74 282.3 202 68.3
DCAR_003657 Daucus carota HOM05D005581 ORTHO05D006792 4.0e-74 282.0 170 75.9
Gohir.A05G361700 Gossypium hirsutum HOM05D005581 ORTHO05D006792 4.0e-74 282.0 186 73.1
SHI25585 Sapria himalayana HOM05D005581 ORTHO05D006792 6.8e-74 281.2 178 73.6
Gorai.001G259000 Gossypium raimondii HOM05D005581 ORTHO05D006792 7.5e-73 277.7 208 63.9
Migut.H00163 Erythranthe guttata HOM05D005581 ORTHO05D006792 1.3e-72 276.9 208 67.3
AUR62001208 Chenopodium quinoa HOM05D005581 ORTHO05D006792 2.8e-72 275.8 192 69.8
AUR62022121 Chenopodium quinoa HOM05D005581 ORTHO05D006792 2.8e-72 275.8 190 71.1
Psat3g165640 Pisum sativum HOM05D005581 ORTHO05D006792 2.8e-72 275.8 195 67.7
Gorai.012G059200 Gossypium raimondii HOM05D005581 ORTHO05D006792 3.7e-72 275.4 186 71.5
Gohir.D04G052800 Gossypium hirsutum HOM05D005581 ORTHO05D006792 4.8e-72 275.0 186 71.5
SGA_v2.0_scaffold135G34832 Striga asiatica HOM05D005581 ORTHO05D006792 4.8e-72 275.0 207 66.2
ECA240G2828 Erigeron canadensis HOM05D005581 ORTHO05D006792 2.4e-71 272.7 195 65.6
Zm00001eb279970 Zea mays HOM05D005581 ORTHO05D006792 4.1e-71 271.9 193 64.8
Aqoxy3G03108 Aquilegia oxysepala HOM05D005581 ORTHO05D006792 9.1e-71 270.8 165 75.8
Os06g0238300 Oryza sativa ssp. japonica HOM05D005581 ORTHO05D006792 2.0e-70 269.6 165 72.7
Lsat_1_v5_gn_0_16520 Lactuca sativa HOM05D005581 ORTHO05D006792 2.7e-70 269.2 200 65.0
TWI12G0286 Tripterygium wilfordii HOM05D005581 ORTHO05D006792 5.9e-70 268.1 200 66.5
SalBow1G8695 Salvia bowleyana HOM05D005581 ORTHO05D006792 2.2e-69 266.2 210 63.3
Hund20033 Selenicereus undatus HOM05D005581 ORTHO05D006792 2.2e-69 266.2 177 71.8
DCAR_011192 Daucus carota HOM05D005581 ORTHO05D006792 5.0e-69 265.0 209 65.1
EL10Ac7g18000 Beta vulgaris HOM05D005581 ORTHO05D006792 1.5e-68 263.5 193 68.4
Carub.0003s2629 Capsella rubella HOM05D005581 ORTHO05D006792 1.5e-68 263.5 174 71.8
AL3G42310 Arabidopsis lyrata HOM05D005581 ORTHO05D006792 1.9e-68 263.1 182 68.7
PSO832G2358 Papaver somniferum HOM05D005581 ORTHO05D006792 2.5e-68 262.7 209 59.3
CARHR102620 Cardamine hirsuta HOM05D005581 ORTHO05D006792 3.2e-68 262.3 174 70.7
AT2G04690 Arabidopsis thaliana HOM05D005581 ORTHO05D006792 1.6e-67 260.0 182 67.0
Thhalv10027934m.g Eutrema salsugineum HOM05D005581 ORTHO05D006792 4.4e-65 251.9 182 65.4
THA.LOC104823921 Tarenaya hassleriana HOM05D005581 ORTHO05D006792 3.7e-64 248.8 188 63.3
BcaB06g27424 Brassica carinata HOM05D005581 ORTHO05D006792 4.9e-64 248.4 182 64.8
SEGI_16176 Sequoiadendron giganteum HOM05D005581 ORTHO05D006792 8.3e-64 247.7 165 66.7
Lj7A408G12 Lonicera japonica HOM05D005581 ORTHO05D006792 1.8e-63 246.5 145 75.9
Sp7g01930 Schrenkiella parvula HOM05D005581 ORTHO05D006792 2.4e-63 246.1 171 67.3
vmacro05787 Vaccinium macrocarpon HOM05D005581 ORTHO05D006792 4.1e-63 245.4 152 75.0
C04p46650 Brassica napus HOM05D005581 ORTHO05D006792 7.7e-62 241.1 171 66.7
BolC4t26253H Brassica oleracea HOM05D005581 ORTHO05D006792 7.7e-62 241.1 171 66.7
BraA04t16955Z Brassica rapa HOM05D005581 ORTHO05D006792 2.9e-61 239.2 171 66.7
A04p12950 Brassica napus HOM05D005581 ORTHO05D006792 5.0e-61 238.4 171 66.1
Psat3g011960 Pisum sativum HOM05D005581 ORTHO05D006792 6.4e-56 221.5 138 77.5
Atru.chr8.2410 Acer truncatum HOM05D005581 ORTHO05D006792 4.1e-55 218.8 128 76.6
AagrBONN_evm.TU.Sc2ySwM_368.1768 Anthoceros agrestis HOM05D005581 ORTHO05D006792 5.4e-55 218.4 168 61.3
Haze_14640 Corylus avellana HOM05D005581 ORTHO05D006792 2.7e-54 216.1 151 71.5
SMO356G0730 Selaginella moellendorffii HOM05D005581 ORTHO05D006792 4.6e-54 215.3 191 54.5
Cc07_g02660 Coffea canephora HOM05D005581 ORTHO05D006792 1.9e-52 209.9 161 67.7
Aa31LG9G1540 Aethionema arabicum HOM05D005581 ORTHO05D006792 7.3e-52 208.0 160 66.2
Mapoly0035s0056 Marchantia polymorpha HOM05D005581 ORTHO05D006792 8.9e-50 201.1 168 54.2
Pp3c1_40840 Physcomitrium patens HOM05D005581 ORTHO05D006792 2.4e-47 193.0 186 51.6
CBR_g36833 Chara braunii HOM05D005581 ORTHO05D006792 1.4e-39 167.2 167 48.5
MSTRG.21916 Avicennia marina HOM05D005581 ORTHO05D006792 8.6e-37 157.9 169 50.9
PRCOL_00005184 Prasinoderma coloniale HOM05D005581 ORTHO05D006792 2.8e-35 152.9 168 44.6
Migut.N00270 Erythranthe guttata HOM05D005581 ORTHO05D006792 2.3e-34 149.8 169 46.7
Migut.H00162 Erythranthe guttata HOM05D005581 ORTHO05D006792 5.8e-33 145.2 161 44.7
Migut.H00166 Erythranthe guttata HOM05D005581 ORTHO05D006792 1.3e-32 144.1 180 43.3
Glyma.17G043600 Glycine max HOM05D005581 ORTHO05D006792 2.3e-29 133.3 77 74.0
SalBow3G2496 Salvia bowleyana HOM05D005581 ORTHO05D006792 1.6e-27 127.1 166 43.4
Cre10.g440700 Chlamydomonas reinhardtii HOM05D005581 ORTHO05D006792 2.1e-27 126.7 191 34.0
HPP92_018422 Vanilla planifolia HOM05D005581 ORTHO05D006792 1.0e-21 107.8 68 67.6
PRCOL_00002387 Prasinoderma coloniale HOM05D005581 ORTHO05D006792 3.4e-17 92.8 163 34.4
HanXRQChr17g0548091 Helianthus annuus HOM05D005581 ORTHO05D006792 1.6e-14 84.0 62 62.9
CDE06G0755 Ceratophyllum demersum HOM05D005581 ORTHO05D006792 6.0e-14 82.0 62 64.5
MBI15_g46244_MAGBIO Magnolia biondii HOM05D005581 ORTHO05D006792 1.0e-13 81.3 170 34.7
arahy.Tifrunner.gnm1.ann1.C3UJQ4 Arachis hypogaea HOM05D005581 ORTHO05D006792 2.8e-11 73.2 71 52.1


User provided reference genes

Program Settings