Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G275200 Prunus persica HOM05D004965 ORTHO05D004401 6.3e-48 193.7 95 100.0
MD09G1042500 Malus domestica HOM05D004965 ORTHO05D004401 2.6e-41 171.8 93 88.2
MD17G1044000 Malus domestica HOM05D004965 ORTHO05D004401 1.8e-34 149.1 84 86.9
FAN14G2761 Fragaria x ananassa HOM05D004965 ORTHO05D004401 1.1e-31 139.8 89 83.1
FvH4_6g49680 Fragaria vesca HOM05D004965 ORTHO05D004401 3.1e-31 138.3 89 82.0
FAN02G2636 Fragaria x ananassa HOM05D004965 ORTHO05D004401 5.3e-31 137.5 89 82.0
FAN09G1906 Fragaria x ananassa HOM05D004965 ORTHO05D004401 5.3e-31 137.5 89 82.0
RcHm_v2.0_Chr2g0169701 Rosa chinensis HOM05D004965 ORTHO05D004401 5.3e-31 137.5 89 80.9
FAN05G5108 Fragaria x ananassa HOM05D004965 ORTHO05D004401 9.1e-31 136.7 89 82.0
QL02p079418 Quercus lobata HOM05D004965 ORTHO05D004401 4.5e-30 134.4 93 65.6
Haze_14606 Corylus avellana HOM05D004965 ORTHO05D004401 2.5e-28 128.6 87 70.1
CiPaw.03G032200 Carya illinoinensis HOM05D004965 ORTHO05D004401 4.4e-25 117.9 88 63.6
CiPaw.04G021200 Carya illinoinensis HOM05D004965 ORTHO05D004401 4.5e-22 107.8 93 54.8
Atru.chr8.2466 Acer truncatum HOM05D004965 ORTHO05D004401 1.0e-21 106.7 107 54.2
Cfa007493 Carpinus fangiana HOM05D004965 ORTHO05D004401 1.7e-21 105.9 84 58.3
Thecc.04G069500 Theobroma cacao HOM05D004965 ORTHO05D004401 1.1e-20 103.2 89 53.9
Cpa.g.sc14.63 Carica papaya HOM05D004965 ORTHO05D004401 1.5e-20 102.8 89 57.3
Ciclev10013642m.g Citrus clementina HOM05D004965 ORTHO05D004401 5.5e-20 100.9 92 57.6
Glyma.13G067000 Glycine max HOM05D004965 ORTHO05D004401 1.6e-19 99.4 86 60.5
CsaV3_5G037710 Cucumis sativus L. HOM05D004965 ORTHO05D004401 3.6e-19 98.2 93 53.8
ClCG09G018520 Citrullus lanatus HOM05D006434 ORTHO05D008069 4.7e-19 97.8 93 52.7
Dinv33690 Davidia involucrata HOM05D004965 ORTHO05D004401 8.0e-19 97.1 89 55.1
Lj2g0009068 Lotus japonicus HOM05D004965 ORTHO05D004401 1.0e-18 96.7 87 59.8
Manes.15G177900 Manihot esculenta HOM05D004965 ORTHO05D004401 1.0e-18 96.7 96 55.2
Phvul.004G023800 Phaseolus vulgaris HOM05D004965 ORTHO05D004401 1.4e-18 96.3 86 59.3
Actinidia06052 Actinidia chinensis HOM05D004965 ORTHO05D004401 2.3e-18 95.5 91 54.9
CANSAT64G1053 Cannabis sativa HOM05D004965 ORTHO05D004401 3.0e-18 95.1 99 53.5
Glyma.19G017400 Glycine max HOM05D004965 ORTHO05D004401 3.0e-18 95.1 86 57.0
Potri.017G074600 Populus trichocarpa HOM05D004965 ORTHO05D004401 3.0e-18 95.1 89 51.7
Sed0027722 Sechium edule HOM05D004965 ORTHO05D004401 1.2e-17 93.2 94 52.1
Gohir.A07G216700 Gossypium hirsutum HOM05D004965 ORTHO05D004401 4.8e-16 87.8 95 52.6
TAR629G2889 Trochodendron aralioides HOM05D004965 ORTHO05D004401 4.8e-16 87.8 85 51.8
Lalb_Chr06g0176581 Lupinus albus HOM05D004965 ORTHO05D004401 6.3e-16 87.4 87 55.2
Dinv24933 Davidia involucrata HOM05D004965 ORTHO05D004401 8.3e-16 87.0 93 50.5
Gohir.D07G223500 Gossypium hirsutum HOM05D004965 ORTHO05D004401 1.1e-15 86.7 95 52.6
Gorai.001G257800 Gossypium raimondii HOM05D004965 ORTHO05D004401 1.1e-15 86.7 95 52.6
TAR369G0013 Trochodendron aralioides HOM05D004965 ORTHO05D004401 3.1e-15 85.1 94 47.9
GSVIVG01020127001 Vitis vinifera HOM05D004965 ORTHO05D004401 2.7e-14 82.0 96 44.8
TPR.G32595 Trifolium pratense HOM05D004965 ORTHO05D004401 4.5e-14 81.3 89 48.3
CSS0011493 Camellia sinensis var. sinensis HOM05D004965 ORTHO05D004401 5.9e-14 80.9 78 51.3
Sabra17G0067000 Salix brachista HOM05D004965 ORTHO05D004401 5.9e-14 80.9 79 51.9
vmacro05780 Vaccinium macrocarpon HOM05D004965 ORTHO05D004401 5.9e-14 80.9 80 51.2
Psat1g077560 Pisum sativum HOM05D004965 ORTHO05D004401 7.7e-14 80.5 87 50.6
Rhsim10G0029300 Rhododendron simsii HOM05D004965 ORTHO05D004401 7.7e-14 80.5 85 44.7
TAR622G1192 Trochodendron aralioides HOM05D004965 ORTHO05D004401 1.0e-13 80.1 77 53.2
Lalb_Chr21g0319141 Lupinus albus HOM05D004965 ORTHO05D004401 1.3e-13 79.7 88 47.7
TWI36G1294 Tripterygium wilfordii HOM05D004965 ORTHO05D004401 6.5e-13 77.4 95 48.4
CSS0043755 Camellia sinensis var. sinensis HOM05D004965 ORTHO05D004401 8.6e-13 77.0 89 48.3
TWI56G0241 Tripterygium wilfordii HOM05D004965 ORTHO05D004401 1.1e-12 76.6 99 47.5
TAR374G1442 Trochodendron aralioides HOM05D004965 ORTHO05D004401 1.9e-12 75.9 87 47.1
DCAR_025362 Daucus carota HOM05D004965 ORTHO05D004401 9.5e-12 73.6 93 43.0
PGR083G1219 Punica granatum HOM05D004965 ORTHO05D004401 9.5e-12 73.6 102 47.1
Dinv31145 Davidia involucrata HOM05D004965 ORTHO05D004401 8.0e-11 70.5 96 46.9
Lju41A28T116 Lonicera japonica HOM05D004965 ORTHO05D004401 8.0e-11 70.5 88 47.7
Cc11_g13890 Coffea canephora HOM05D004965 ORTHO05D004401 1.4e-10 69.7 91 41.8
AUR62030559 Chenopodium quinoa HOM05D068275 ORTHO05D004401 1.8e-10 69.3 99 39.4
arahy.Tifrunner.gnm1.ann1.6A0KRF Arachis hypogaea HOM05D004965 ORTHO05D004401 2.3e-10 68.9 91 49.5
arahy.Tifrunner.gnm1.ann1.E1G8VG Arachis hypogaea HOM05D004965 ORTHO05D004401 2.3e-10 68.9 91 49.5
Thecc.02G237300 Theobroma cacao HOM05D004965 ORTHO05D004401 3.0e-10 68.6 92 45.7
Cc07_g02840 Coffea canephora HOM05D004965 ORTHO05D004401 4.0e-10 68.2 98 39.8
Nn3g17067 Nelumbo nucifera HOM05D004965 ORTHO05D004401 4.0e-10 68.2 92 46.7
Eucgr.J02154 Eucalyptus grandis HOM05D004965 ORTHO05D004401 5.2e-10 67.8 88 42.0
COL.COLO4_36990 Corchorus olitorius HOM05D004965 ORTHO05D004401 6.8e-10 67.4 56 55.4
DCAR_006716 Daucus carota HOM05D004965 ORTHO05D004401 6.8e-10 67.4 93 40.9
Glyma.02G025700 Glycine max HOM05D004965 ORTHO05D004401 8.8e-10 67.0 84 41.7
Carub.0005s0698 Capsella rubella HOM05D009946 ORTHO05D004401 1.2e-09 66.6 86 45.3
EL10Ac6g13083 Beta vulgaris HOM05D004965 ORTHO05D004401 1.5e-09 66.2 90 38.9
Medtr6g009390 Medicago truncatula HOM05D004965 ORTHO05D004401 1.5e-09 66.2 65 49.2
Nn4g22977 Nelumbo nucifera HOM05D004965 ORTHO05D004401 1.5e-09 66.2 87 44.8
Actinidia12285 Actinidia chinensis HOM05D004965 ORTHO05D004401 2.0e-09 65.9 91 45.1
Hund13292 Selenicereus undatus HOM05D004965 ORTHO05D004401 2.0e-09 65.9 90 40.0
vmacro16304 Vaccinium macrocarpon HOM05D004965 ORTHO05D004401 2.0e-09 65.9 93 39.8
CSS0014777 Camellia sinensis var. sinensis HOM05D004965 ORTHO05D004401 4.4e-09 64.7 84 40.5
Ciclev10033175m.g Citrus clementina HOM05D004965 ORTHO05D004401 7.5e-09 63.9 86 44.2
Duzib187G0871 Durio zibethinus HOM05D004965 ORTHO05D004401 7.5e-09 63.9 70 44.3
Sp2g17220 Schrenkiella parvula HOM05D009946 ORTHO05D004401 7.5e-09 63.9 86 44.2
TWI12G0653 Tripterygium wilfordii HOM05D004965 ORTHO05D004401 9.8e-09 63.5 88 46.6
AL5G18080 Arabidopsis lyrata HOM05D009946 ORTHO05D004401 1.3e-08 63.2 86 41.9
CARHR292510 Cardamine hirsuta HOM05D009946 ORTHO05D004401 1.3e-08 63.2 86 43.0
Thhalv10005220m.g Eutrema salsugineum HOM05D009946 ORTHO05D004401 1.3e-08 63.2 85 42.4
Glyma.01G038900 Glycine max HOM05D004965 ORTHO05D004401 1.7e-08 62.8 80 42.5
Prupe.1G263100 Prunus persica HOM05D004965 ORTHO05D004401 1.7e-08 62.8 90 41.1
Manes.01G193600 Manihot esculenta HOM05D004965 ORTHO05D004401 2.2e-08 62.4 87 43.7
Sc10g0004060 Simmondsia chinensis HOM05D004965 ORTHO05D004401 2.8e-08 62.0 94 37.2
AT3G28455 Arabidopsis thaliana HOM05D009946 ORTHO05D004401 4.9e-08 61.2 86 41.9
Lalb_Chr05g0217401 Lupinus albus HOM05D004965 ORTHO05D004401 8.3e-08 60.5 83 38.6
Lalb_Chr09g0326631 Lupinus albus HOM05D004965 ORTHO05D004401 8.3e-08 60.5 83 39.8
Lj2g0004313 Lotus japonicus HOM05D004965 ORTHO05D004401 1.1e-07 60.1 85 37.6
Lalb_Chr16g0382641 Lupinus albus HOM05D004965 ORTHO05D004401 1.1e-07 60.1 88 40.9
Thhalv10028314m.g Eutrema salsugineum HOM05D009946 ORTHO05D004401 1.4e-07 59.7 80 43.8
Lsat_1_v5_gn_0_35980 Lactuca sativa HOM05D004965 ORTHO05D004401 1.4e-07 59.7 85 43.5
Duzib248G0243 Durio zibethinus HOM05D004965 ORTHO05D004401 1.8e-07 59.3 102 41.2
Gohir.A01G142000 Gossypium hirsutum HOM05D004965 ORTHO05D004401 1.8e-07 59.3 99 37.4
PGR119G0489 Punica granatum HOM05D004965 ORTHO05D004401 1.8e-07 59.3 89 43.8
MBI01_g13075_MAGBIO Magnolia biondii HOM05D004965 ORTHO05D004401 2.4e-07 58.9 91 41.8
Manes.05G094200 Manihot esculenta HOM05D004965 ORTHO05D004401 2.4e-07 58.9 88 42.0
PGSC0003DMG400004191 Solanum tuberosum HOM05D004965 ORTHO05D004401 2.4e-07 58.9 94 39.4
Aqoxy3G03187 Aquilegia oxysepala HOM05D004965 ORTHO05D004401 3.1e-07 58.5 90 41.1
Gorai.002G165000 Gossypium raimondii HOM05D004965 ORTHO05D004401 3.1e-07 58.5 99 37.4
Aqoxy3G00848 Aquilegia oxysepala HOM05D004965 ORTHO05D004401 4.1e-07 58.2 87 39.1
CiPaw.06G078100 Carya illinoinensis HOM05D004965 ORTHO05D004401 4.1e-07 58.2 92 41.3
Gohir.D01G133500 Gossypium hirsutum HOM05D004965 ORTHO05D004401 7.0e-07 57.4 99 37.4
Atru.chr11.1915 Acer truncatum HOM05D004965 ORTHO05D004401 9.2e-07 57.0 111 34.2
MBI04_g09739_MAGBIO Magnolia biondii HOM05D004965 ORTHO05D004401 9.2e-07 57.0 53 49.1
Phvul.002G079000 Phaseolus vulgaris HOM05D004965 ORTHO05D004401 9.2e-07 57.0 80 38.8
MSTRG.2369 Avicennia marina HOM05D004965 ORTHO05D004401 1.6e-06 56.2 93 35.5
Gohir.A03G144700 Gossypium hirsutum HOM05D004965 ORTHO05D004401 1.6e-06 56.2 86 40.7
Peaxi162Scf00059g00123 Petunia axillaris HOM05D028751 ORTHO05D030265 1.6e-06 56.2 83 38.6
CANSAT01G1612 Cannabis sativa HOM05D004965 ORTHO05D004401 2.7e-06 55.5 108 34.3
HanXRQChr15g0474251 Helianthus annuus HOM05D004965 ORTHO05D004401 2.7e-06 55.5 85 38.8
ECA246G4714 Erigeron canadensis HOM05D004965 ORTHO05D004401 3.5e-06 55.1 85 43.5
A09p03680 Brassica napus HOM05D009946 ORTHO05D004401 5.9e-06 54.3 85 38.8
C09p03880 Brassica napus HOM05D009946 ORTHO05D004401 5.9e-06 54.3 85 38.8
Lsat_1_v5_gn_8_161261 Lactuca sativa HOM05D004965 ORTHO05D004401 5.9e-06 54.3 79 41.8
Psat2g116360 Pisum sativum HOM05D004965 ORTHO05D004401 7.8e-06 53.9 87 40.2


User provided reference genes

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