Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G275100 Prunus persica HOM05D006434 ORTHO05D008069 1.2e-152 543.1 274 100.0
MD09G1042700 Malus domestica HOM05D006434 ORTHO05D008069 2.2e-122 442.6 271 83.4
RcHm_v2.0_Chr2g0169691 Rosa chinensis HOM05D006434 ORTHO05D008069 1.0e-114 417.2 270 80.0
FAN02G4063 Fragaria x ananassa HOM05D006434 ORTHO05D008069 5.2e-111 404.8 272 77.6
FAN09G0258 Fragaria x ananassa HOM05D006434 ORTHO05D008069 1.5e-110 403.3 272 77.6
FvH4_6g49670 Fragaria vesca HOM05D006434 ORTHO05D008069 9.7e-110 400.6 272 77.2
FAN05G1688 Fragaria x ananassa HOM05D006434 ORTHO05D008069 9.7e-110 400.6 268 77.6
FAN14G5872 Fragaria x ananassa HOM05D006434 ORTHO05D008069 3.7e-109 398.7 272 77.2
Dinv35002 Davidia involucrata HOM05D006434 ORTHO05D008069 4.5e-107 391.7 274 74.8
GSVIVG01032566001 Vitis vinifera HOM05D006434 ORTHO05D008069 1.5e-102 376.7 272 72.1
Cfa007492 Carpinus fangiana HOM05D006434 ORTHO05D008069 4.5e-99 365.2 271 72.3
vmacro05779 Vaccinium macrocarpon HOM05D006434 ORTHO05D008069 7.7e-99 364.4 275 72.4
CANSAT64G2331 Cannabis sativa HOM05D006434 ORTHO05D008069 1.7e-98 363.2 273 70.0
TAR629G3263 Trochodendron aralioides HOM05D006434 ORTHO05D008069 1.7e-98 363.2 276 70.3
Actinidia06053 Actinidia chinensis HOM05D006434 ORTHO05D008069 8.6e-98 360.9 274 70.4
CiPaw.03G032300 Carya illinoinensis HOM05D006434 ORTHO05D008069 1.5e-97 360.1 271 70.1
CsaV3_5G037720 Cucumis sativus L. HOM05D006434 ORTHO05D008069 3.2e-97 359.0 271 69.7
MELO3C021484.2 Cucumis melo HOM05D006434 ORTHO05D008069 7.2e-97 357.8 271 69.4
Sed0011674 Sechium edule HOM05D006434 ORTHO05D008069 2.1e-96 356.3 272 68.0
ClCG09G018520 Citrullus lanatus HOM05D006434 ORTHO05D008069 1.8e-95 353.2 272 68.0
CSS0004781 Camellia sinensis var. sinensis HOM05D006434 ORTHO05D008069 4.0e-95 352.1 279 67.0
Rhsim10G0029400 Rhododendron simsii HOM05D006434 ORTHO05D008069 1.2e-94 350.5 275 70.2
CSS0040499 Camellia sinensis var. sinensis HOM05D006434 ORTHO05D008069 2.6e-94 349.4 291 65.3
TWI56G0494 Tripterygium wilfordii HOM05D006434 ORTHO05D008069 3.4e-94 349.0 271 66.8
PGSC0003DMG400006900 Solanum tuberosum HOM05D006434 ORTHO05D008069 5.7e-94 348.2 232 74.6
Nitab4.5_0001727g0150 Nicotiana tabacum HOM05D006434 ORTHO05D008069 9.8e-94 347.4 277 67.9
CAN.G1128.11 Capsicum annuum HOM05D006434 ORTHO05D008069 3.7e-93 345.5 277 67.9
Hma1.2p1_0136F.1_g062090 Hydrangea macrophylla HOM05D006434 ORTHO05D008069 8.3e-93 344.4 220 78.6
COL.COLO4_36989 Corchorus olitorius HOM05D006434 ORTHO05D008069 1.1e-92 344.0 274 66.1
QL02p079411 Quercus lobata HOM05D006434 ORTHO05D008069 1.1e-92 344.0 272 69.1
Manes.15G178000 Manihot esculenta HOM05D006434 ORTHO05D008069 1.4e-92 343.6 271 69.0
Solyc02g067540.3 Solanum lycopersicum HOM05D006434 ORTHO05D008069 4.1e-92 342.0 277 67.1
Sopen02g016670 Solanum pennellii HOM05D006434 ORTHO05D008069 4.1e-92 342.0 277 67.1
Gohir.A07G216800 Gossypium hirsutum HOM05D006434 ORTHO05D008069 5.9e-91 338.2 277 66.4
Sabra16G0229200 Salix brachista HOM05D006434 ORTHO05D008069 7.8e-91 337.8 279 66.3
Atru.chr8.2465 Acer truncatum HOM05D006434 ORTHO05D008069 1.0e-90 337.4 273 66.7
Phvul.004G023900 Phaseolus vulgaris HOM05D006434 ORTHO05D008069 1.3e-90 337.0 275 67.3
Nn1g08819 Nelumbo nucifera HOM05D006434 ORTHO05D008069 1.7e-90 336.7 273 66.7
Ciclev10012231m.g Citrus clementina HOM05D006434 ORTHO05D008069 2.3e-90 336.3 269 67.3
Potri.001G349800 Populus trichocarpa HOM05D006434 ORTHO05D008069 2.3e-90 336.3 281 65.8
Gorai.001G257900 Gossypium raimondii HOM05D006434 ORTHO05D008069 5.0e-90 335.1 277 66.4
Thecc.04G069300 Theobroma cacao HOM05D006434 ORTHO05D008069 6.6e-90 334.7 278 64.7
Gohir.D07G223600 Gossypium hirsutum HOM05D006434 ORTHO05D008069 1.5e-89 333.6 277 66.1
PGR142G2438 Punica granatum HOM05D006434 ORTHO05D008069 2.5e-89 332.8 273 64.8
Duzib264G0249 Durio zibethinus HOM05D006434 ORTHO05D008069 3.6e-88 328.9 277 64.6
Aqoxy3G00846 Aquilegia oxysepala HOM05D006434 ORTHO05D008069 4.7e-88 328.6 266 64.7
Eucgr.I01896 Eucalyptus grandis HOM05D006434 ORTHO05D008069 8.0e-88 327.8 231 71.0
Cc07_g02850 Coffea canephora HOM05D006434 ORTHO05D008069 6.8e-87 324.7 275 65.5
PSO478G2838 Papaver somniferum HOM05D006434 ORTHO05D008069 3.4e-86 322.4 270 63.7
Lj2g0012157 Lotus japonicus HOM05D006434 ORTHO05D008069 4.4e-86 322.0 278 66.5
Peaxi162Scf00059g00128 Petunia axillaris HOM05D006434 ORTHO05D008069 9.8e-86 320.9 274 63.9
Haze_14607 Corylus avellana HOM05D006434 ORTHO05D008069 1.3e-85 320.5 269 66.2
Oeu022866.3 Olea europaea HOM05D006434 ORTHO05D008069 3.7e-85 318.9 314 58.3
PSO161G0076 Papaver somniferum HOM05D006434 ORTHO05D008069 1.8e-84 316.6 271 63.1
Medtr6g009400 Medicago truncatula HOM05D006434 ORTHO05D008069 2.4e-84 316.2 280 64.6
Migut.H00876 Erythranthe guttata HOM05D006434 ORTHO05D008069 3.2e-84 315.8 272 64.0
EL10Ac2g02902 Beta vulgaris HOM05D006434 ORTHO05D008069 4.1e-84 315.5 292 62.3
Sc10g0004040 Simmondsia chinensis HOM05D006434 ORTHO05D008069 9.2e-84 314.3 214 72.9
Glyma.13G066900 Glycine max HOM05D006434 ORTHO05D008069 1.6e-83 313.5 275 62.5
ATR0665G567 Amborella trichopoda HOM05D006434 ORTHO05D008069 2.0e-83 313.2 234 68.4
Lsat_1_v5_gn_4_180280 Lactuca sativa HOM05D006434 ORTHO05D008069 2.7e-83 312.8 251 68.9
HanXRQChr15g0488521 Helianthus annuus HOM05D006434 ORTHO05D008069 4.6e-83 312.0 212 75.0
MSTRG.23964 Avicennia marina HOM05D006434 ORTHO05D008069 5.9e-83 311.6 227 72.7
AUR62018326 Chenopodium quinoa HOM05D006434 ORTHO05D008069 1.0e-82 310.8 271 63.5
arahy.Tifrunner.gnm1.ann1.X2C98S Arachis hypogaea HOM05D006434 ORTHO05D008069 1.3e-82 310.5 285 63.5
TPR.G32608 Trifolium pratense HOM05D006434 ORTHO05D008069 5.0e-82 308.5 278 62.6
arahy.Tifrunner.gnm1.ann1.ICRE53 Arachis hypogaea HOM05D006434 ORTHO05D008069 8.6e-82 307.8 276 63.4
SGA_v2.0_scaffold205G41750 Striga asiatica HOM05D006434 ORTHO05D008069 8.6e-82 307.8 227 70.0
VMungo0464G0451 Vigna mungo HOM05D006434 ORTHO05D008069 1.5e-81 307.0 275 62.5
Carub.0005s0699 Capsella rubella HOM05D006434 ORTHO05D008069 1.2e-80 303.9 270 59.3
ECA232G4812 Erigeron canadensis HOM05D006434 ORTHO05D008069 2.8e-80 302.8 249 66.7
AL5G18090 Arabidopsis lyrata HOM05D006434 ORTHO05D008069 4.7e-80 302.0 267 59.9
AT3G28460 Arabidopsis thaliana HOM05D006434 ORTHO05D008069 2.3e-79 299.7 266 59.4
THA.LOC104823923 Tarenaya hassleriana HOM05D006434 ORTHO05D008069 3.1e-79 299.3 275 60.0
Thhalv10004634m.g Eutrema salsugineum HOM05D006434 ORTHO05D008069 3.4e-78 295.8 271 61.3
Lalb_Chr21g0319131 Lupinus albus HOM05D006434 ORTHO05D008069 5.8e-78 295.0 277 62.8
CARHR292500 Cardamine hirsuta HOM05D006434 ORTHO05D008069 2.9e-77 292.7 269 59.9
Psat1g076480 Pisum sativum HOM05D006434 ORTHO05D008069 1.4e-76 290.4 236 66.1
Aa31LG2G4610 Aethionema arabicum HOM05D006434 ORTHO05D008069 1.9e-76 290.0 233 65.7
CDE02G1577 Ceratophyllum demersum HOM05D006434 ORTHO05D008069 1.9e-76 290.0 253 61.3
DCAR_006717 Daucus carota HOM05D006434 ORTHO05D008069 2.4e-76 289.7 182 76.9
Sp2g17230 Schrenkiella parvula HOM05D006434 ORTHO05D008069 4.1e-76 288.9 273 60.4
BcaC06g33735 Brassica carinata HOM05D006434 ORTHO05D008069 3.5e-75 285.8 273 59.0
AUR62030560 Chenopodium quinoa HOM05D006434 ORTHO05D008069 3.5e-75 285.8 290 56.9
A06p40510 Brassica napus HOM05D006434 ORTHO05D008069 1.0e-74 284.3 276 57.2
BraA06t26970Z Brassica rapa HOM05D006434 ORTHO05D008069 1.0e-74 284.3 276 57.2
C07p37520 Brassica napus HOM05D006434 ORTHO05D008069 3.0e-74 282.7 276 58.3
Lj7A404T37 Lonicera japonica HOM05D006434 ORTHO05D008069 5.0e-74 282.0 233 65.7
BolC7t44265H Brassica oleracea HOM05D006434 ORTHO05D008069 3.3e-73 279.3 276 58.0
HPP92_023566 Vanilla planifolia HOM05D006434 ORTHO05D008069 9.5e-73 277.7 271 56.5
unitig_744.g24344 Utricularia gibba HOM05D006434 ORTHO05D008069 1.2e-72 277.3 213 69.5
Glyma.19G017500 Glycine max HOM05D006434 ORTHO05D008069 6.8e-71 271.6 156 84.6
CSS0001127 Camellia sinensis var. sinensis HOM05D006434 ORTHO05D008069 3.4e-70 269.2 158 81.0
Nitab4.5_0003431g0070 Nicotiana tabacum HOM05D006434 ORTHO05D008069 4.4e-70 268.9 158 82.3
Os03g0736400 Oryza sativa ssp. japonica HOM05D006434 ORTHO05D008069 6.4e-69 265.0 277 55.2
Cpa.g.sc14.62 Carica papaya HOM05D006434 ORTHO05D008069 1.9e-68 263.5 156 84.6
Zm00001eb215320 Zea mays HOM05D006434 ORTHO05D008069 7.1e-68 261.5 219 60.7
CSS0033350 Camellia sinensis var. sinensis HOM05D006434 ORTHO05D008069 1.7e-66 256.9 156 79.5
MBI01_g13068_MAGBIO Magnolia biondii HOM05D006434 ORTHO05D008069 8.9e-63 244.6 176 70.5
CSS0043817 Camellia sinensis var. sinensis HOM05D006434 ORTHO05D008069 1.3e-61 240.7 139 82.0
Ca_04243_v3 Cicer arietinum L. HOM05D006434 ORTHO05D008069 5.1e-58 228.8 182 65.4
Hund13291 Selenicereus undatus HOM05D006434 ORTHO05D008069 1.4e-55 220.7 234 55.6
SalBow1G5247 Salvia bowleyana HOM05D006434 ORTHO05D008069 4.4e-54 215.7 246 52.8
SMO171G0075 Selaginella moellendorffii HOM05D006434 ORTHO05D008069 2.4e-52 209.9 164 59.8
Pp3c7_630 Physcomitrium patens HOM05D006434 ORTHO05D008069 6.2e-48 195.3 195 54.4
AagrBONN_evm.TU.Sc2ySwM_344.3988 Anthoceros agrestis HOM05D006434 ORTHO05D008069 1.8e-47 193.7 158 61.4
CBR_g31858 Chara braunii HOM05D006434 ORTHO05D008069 5.6e-41 172.2 171 51.5
Mapoly0140s0031 Marchantia polymorpha HOM05D006434 ORTHO05D008069 9.6e-41 171.4 167 52.7
PRCOL_00006620 Prasinoderma coloniale HOM05D006434 ORTHO05D008069 2.8e-32 143.3 187 40.1
Solyc01g057060.1 Solanum lycopersicum HOM05D006434 ORTHO05D008069 4.0e-31 139.4 96 71.9
Cre13.g566300 Chlamydomonas reinhardtii HOM05D006434 ORTHO05D008069 5.3e-31 139.0 197 40.1
Sopen01g021310 Solanum pennellii HOM05D006434 ORTHO05D008069 1.2e-30 137.9 91 75.8
MCO03G139 Micromonas commoda HOM05D006434 ORTHO05D008069 5.8e-30 135.6 120 52.5
SEGI_25544 Sequoiadendron giganteum HOM05D006434 ORTHO05D008069 1.9e-25 120.6 120 54.2
MD17G1044100 Malus domestica HOM05D006434 ORTHO05D008069 4.3e-25 119.4 61 93.4
TAR371G0222 Trochodendron aralioides HOM05D006434 ORTHO05D008069 1.5e-22 110.9 195 43.1
SEGI_38692 Sequoiadendron giganteum HOM05D006434 ORTHO05D008069 8.5e-21 105.1 81 64.2
MD17G1044200 Malus domestica HOM05D006434 ORTHO05D008069 8.5e-13 78.6 52 78.8
Lsat_1_v5_gn_7_34121 Lactuca sativa HOM05D006434 ORTHO05D008069 1.5e-09 67.8 37 83.8
Cpa.g.sc14.61 Carica papaya HOM05D006434 ORTHO05D008069 2.8e-08 63.5 123 44.7
MBI01_g13070_MAGBIO Magnolia biondii HOM05D006434 ORTHO05D008069 3.4e-06 56.6 34 76.5


User provided reference genes

Program Settings