Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G272800 Prunus persica HOM05D002474 ORTHO05D006727 8.7e-210 733.4 375 100.0
FvH4_6g49390 Fragaria vesca HOM05D002474 ORTHO05D006727 1.4e-175 619.8 374 84.0
RcHm_v2.0_Chr2g0169251 Rosa chinensis HOM05D002474 ORTHO05D006727 1.7e-173 612.8 374 83.2
FAN09G4837 Fragaria x ananassa HOM05D002474 ORTHO05D006727 5.7e-161 571.2 371 79.5
FAN02G0112 Fragaria x ananassa HOM05D002474 ORTHO05D006727 1.4e-159 566.6 371 78.7
FAN14G2185 Fragaria x ananassa HOM05D002474 ORTHO05D006727 3.1e-159 565.5 371 79.0
QL02p080225 Quercus lobata HOM05D002474 ORTHO05D006727 1.2e-153 547.0 374 75.4
Atru.chr8.2476 Acer truncatum HOM05D002474 ORTHO05D006727 1.0e-141 507.3 372 69.4
TAR629G1594 Trochodendron aralioides HOM05D002474 ORTHO05D006727 1.9e-140 503.1 365 69.3
FAN05G2709 Fragaria x ananassa HOM05D002474 ORTHO05D006727 4.2e-140 501.9 370 72.7
Nn4g23008 Nelumbo nucifera HOM05D002474 ORTHO05D006727 4.0e-138 495.4 374 67.9
Thecc.09G254500 Theobroma cacao HOM05D002474 ORTHO05D006727 6.8e-138 494.6 377 68.2
Cfa007503 Carpinus fangiana HOM05D002474 ORTHO05D006727 4.4e-137 491.9 374 69.3
Solyc02g067480.3 Solanum lycopersicum HOM05D002474 ORTHO05D006727 7.5e-137 491.1 356 68.0
Sopen02g016630 Solanum pennellii HOM05D002474 ORTHO05D006727 1.3e-136 490.3 356 68.0
CSS0021046 Camellia sinensis var. sinensis HOM05D002474 ORTHO05D006727 6.3e-136 488.0 373 67.3
Gorai.013G255100 Gossypium raimondii HOM05D002474 ORTHO05D006727 8.3e-136 487.6 381 67.7
PGSC0003DMG400006940 Solanum tuberosum HOM05D002474 ORTHO05D006727 1.1e-135 487.3 356 67.7
CiPaw.04G020500 Carya illinoinensis HOM05D002474 ORTHO05D006727 4.1e-135 485.3 374 67.6
Hma1.2p1_0449F.1_g154950 Hydrangea macrophylla HOM05D002474 ORTHO05D006727 4.1e-135 485.3 324 74.4
GSVIVG01032597001 Vitis vinifera HOM05D002474 ORTHO05D006727 4.1e-135 485.3 374 67.4
Lsat_1_v5_gn_3_102300 Lactuca sativa HOM05D002474 ORTHO05D006727 5.4e-135 485.0 369 63.7
Potri.004G130000 Populus trichocarpa HOM05D002474 ORTHO05D006727 9.2e-135 484.2 376 67.3
MELO3C021965.2 Cucumis melo HOM05D002474 ORTHO05D006727 2.0e-134 483.0 327 71.9
Nitab4.5_0002699g0040 Nicotiana tabacum HOM05D002474 ORTHO05D006727 2.7e-134 482.6 343 69.1
Oeu033341.3 Olea europaea HOM05D002474 ORTHO05D006727 2.7e-134 482.6 405 61.5
Nitab4.5_0006062g0010 Nicotiana tabacum HOM05D002474 ORTHO05D006727 1.7e-133 479.9 375 65.1
CAN.G1128.5 Capsicum annuum HOM05D002474 ORTHO05D006727 2.9e-133 479.2 372 64.5
DCAR_011168 Daucus carota HOM05D002474 ORTHO05D006727 2.9e-133 479.2 372 65.6
Gohir.A13G220300 Gossypium hirsutum HOM05D002474 ORTHO05D006727 5.0e-133 478.4 381 66.4
CsaV3_5G037800 Cucumis sativus L. HOM05D002474 ORTHO05D006727 6.6e-133 478.0 327 71.3
Gohir.D13G224300 Gossypium hirsutum HOM05D002474 ORTHO05D006727 6.6e-133 478.0 385 66.5
Eucgr.J02138 Eucalyptus grandis HOM05D002474 ORTHO05D006727 1.5e-132 476.9 372 65.6
Phvul.004G025500 Phaseolus vulgaris HOM05D002474 ORTHO05D006727 1.9e-132 476.5 340 70.0
TPR.G4252 Trifolium pratense HOM05D002474 ORTHO05D006727 2.5e-132 476.1 346 68.5
Sabra04G0087600 Salix brachista HOM05D002474 ORTHO05D006727 4.3e-132 475.3 383 66.6
Glyma.19G019000 Glycine max HOM05D002474 ORTHO05D006727 1.2e-131 473.8 367 65.7
Ciclev10011620m.g Citrus clementina HOM05D002474 ORTHO05D006727 2.1e-131 473.0 375 67.2
Psat1g077640 Pisum sativum HOM05D002474 ORTHO05D006727 3.6e-131 472.2 340 69.1
HanXRQChr17g0547501 Helianthus annuus HOM05D002474 ORTHO05D006727 1.8e-130 469.9 377 62.1
Migut.K01338 Erythranthe guttata HOM05D002474 ORTHO05D006727 2.3e-130 469.5 366 64.5
Nitab4.5_0023901g0010 Nicotiana tabacum HOM05D002474 ORTHO05D006727 4.0e-130 468.8 321 71.3
Aqoxy3G00804 Aquilegia oxysepala HOM05D002474 ORTHO05D006727 5.2e-130 468.4 313 73.5
Lalb_Chr06g0175531 Lupinus albus HOM05D002474 ORTHO05D006727 8.9e-130 467.6 324 71.9
Medtr6g011270 Medicago truncatula HOM05D002474 ORTHO05D006727 1.5e-129 466.8 340 68.2
Sc11g0006920 Simmondsia chinensis HOM05D002474 ORTHO05D006727 1.5e-129 466.8 370 64.3
ECA246G0556 Erigeron canadensis HOM05D002474 ORTHO05D006727 5.8e-129 464.9 376 62.0
Cpa.g.sc14.49 Carica papaya HOM05D002474 ORTHO05D006727 2.2e-128 463.0 386 63.5
Sed0010242 Sechium edule HOM05D002474 ORTHO05D006727 2.9e-128 462.6 327 69.4
PSO478G4089 Papaver somniferum HOM05D002474 ORTHO05D006727 4.9e-128 461.8 314 72.3
RhsimUnG0054500 Rhododendron simsii HOM05D002474 ORTHO05D006727 8.3e-128 461.1 374 62.6
Ca_04259_v3 Cicer arietinum L. HOM05D002474 ORTHO05D006727 1.1e-127 460.7 344 68.9
PSO161G0033 Papaver somniferum HOM05D002474 ORTHO05D006727 1.9e-127 459.9 309 72.8
Lj2g0026556 Lotus japonicus HOM05D002474 ORTHO05D006727 3.5e-126 455.7 311 71.4
Haze_14590 Corylus avellana HOM05D002474 ORTHO05D006727 2.3e-125 453.0 376 65.2
arahy.Tifrunner.gnm1.ann1.B2F8E8 Arachis hypogaea HOM05D002474 ORTHO05D006727 3.3e-124 449.1 358 64.2
VMungo0464G0136 Vigna mungo HOM05D002474 ORTHO05D006727 4.3e-124 448.7 389 60.4
unitig_748.g8621 Utricularia gibba HOM05D002474 ORTHO05D006727 5.6e-124 448.4 325 66.5
arahy.Tifrunner.gnm1.ann1.DRNA5E Arachis hypogaea HOM05D002474 ORTHO05D006727 1.6e-123 446.8 377 61.5
THA.LOC104805441 Tarenaya hassleriana HOM05D002474 ORTHO05D006727 1.8e-122 443.4 359 62.4
Duzib168G1861 Durio zibethinus HOM05D002474 ORTHO05D006727 1.0e-117 427.6 377 61.0
Carub.0007s3579 Capsella rubella HOM05D002474 ORTHO05D006727 1.9e-116 423.3 348 61.2
COL.COLO4_24935 Corchorus olitorius HOM05D002474 ORTHO05D006727 1.9e-116 423.3 313 69.3
Hund13252 Selenicereus undatus HOM05D002474 ORTHO05D006727 1.9e-116 423.3 384 59.6
AL7G50200 Arabidopsis lyrata HOM05D002474 ORTHO05D006727 2.5e-116 422.9 341 62.2
CANSAT64G2711 Cannabis sativa HOM05D002474 ORTHO05D006727 3.3e-116 422.5 372 62.9
TWI60G0106 Tripterygium wilfordii HOM05D002474 ORTHO05D006727 5.6e-116 421.8 329 66.6
CARHR262240 Cardamine hirsuta HOM05D002474 ORTHO05D006727 7.3e-116 421.4 344 60.8
CDE08G1502 Ceratophyllum demersum HOM05D002474 ORTHO05D006727 9.5e-116 421.0 314 64.0
Manes.S095220 Manihot esculenta HOM05D002474 ORTHO05D006727 1.2e-115 420.6 307 69.7
Os12g0638800 Oryza sativa ssp. japonica HOM05D002474 ORTHO05D006727 1.6e-115 420.2 314 63.7
C04p46420 Brassica napus HOM05D002474 ORTHO05D006727 4.7e-115 418.7 372 58.1
PGR083G0251 Punica granatum HOM05D002474 ORTHO05D006727 1.8e-114 416.8 381 59.3
vmacro05750 Vaccinium macrocarpon HOM05D002474 ORTHO05D006727 1.8e-114 416.8 388 57.2
AT5G39940 Arabidopsis thaliana HOM05D002474 ORTHO05D006727 2.3e-114 416.4 348 60.1
ClCG09G018440 Citrullus lanatus HOM05D002474 ORTHO05D006727 2.3e-114 416.4 459 49.9
Rhsim10G0032000 Rhododendron simsii HOM05D002474 ORTHO05D006727 2.3e-114 416.4 374 59.9
BraA04t16928Z Brassica rapa HOM05D002474 ORTHO05D006727 4.0e-114 415.6 342 62.9
A04p12710 Brassica napus HOM05D002474 ORTHO05D006727 1.2e-113 414.1 342 62.9
AUR62031654 Chenopodium quinoa HOM05D002474 ORTHO05D006727 5.8e-113 411.8 326 63.5
Aa31LG9G1670 Aethionema arabicum HOM05D002474 ORTHO05D006727 1.7e-112 410.2 342 61.1
Peaxi162Scf00059g00319 Petunia axillaris HOM05D002474 ORTHO05D006727 1.7e-112 410.2 344 61.6
Zm00001eb033100 Zea mays HOM05D002474 ORTHO05D006727 2.9e-112 409.5 392 52.3
SGA_v2.0_scaffold224G42953 Striga asiatica HOM05D002474 ORTHO05D006727 6.4e-112 408.3 331 63.4
Hma1.2p1_0449F.1_g154940 Hydrangea macrophylla HOM05D002474 ORTHO05D006727 1.9e-111 406.8 322 65.8
Ah.12g065360 Amaranthus hybridus HOM05D002474 ORTHO05D006727 1.1e-108 397.5 374 56.4
Thhalv10028129m.g Eutrema salsugineum HOM05D002474 ORTHO05D006727 3.3e-108 396.0 341 59.5
QL02p080117 Quercus lobata HOM05D002474 ORTHO05D006727 7.3e-108 394.8 268 77.2
BcaB06g27397 Brassica carinata HOM05D002474 ORTHO05D006727 2.8e-107 392.9 365 58.4
ATR0609G116 Amborella trichopoda HOM05D002474 ORTHO05D006727 1.1e-106 391.0 311 62.4
EL10Ac2g02929 Beta vulgaris HOM05D002474 ORTHO05D006727 1.0e-101 374.4 326 58.9
Dinv33713 Davidia involucrata HOM05D002474 ORTHO05D006727 1.8e-98 363.6 239 74.5
Cc07_g02920 Coffea canephora HOM05D002474 ORTHO05D006727 3.8e-96 355.9 285 63.9
CSS0037906 Camellia sinensis var. sinensis HOM05D002474 ORTHO05D006727 2.7e-94 349.7 244 70.9
AagrBONN_evm.TU.Sc2ySwM_369.199 Anthoceros agrestis HOM05D002474 ORTHO05D006727 3.3e-92 342.8 312 53.8
Mapoly0035s0063 Marchantia polymorpha HOM05D002474 ORTHO05D006727 4.5e-89 332.4 313 52.4
Pp3c23_2270 Physcomitrium patens HOM05D002474 ORTHO05D006727 7.6e-89 331.6 327 51.7
AUR62018296 Chenopodium quinoa HOM05D002474 ORTHO05D006727 2.1e-86 323.6 322 54.0
HanXRQChr16g0519921 Helianthus annuus HOM05D002474 ORTHO05D006727 7.4e-84 315.1 236 64.8
SMO137G0254 Selaginella moellendorffii HOM05D002474 ORTHO05D006727 1.9e-76 290.4 329 46.8
SalBow1G0883 Salvia bowleyana HOM05D002474 ORTHO05D006727 3.3e-76 289.7 346 50.0
Rhsim10G0031600 Rhododendron simsii HOM05D002474 ORTHO05D006727 2.4e-74 283.5 241 61.0
Hund13251 Selenicereus undatus HOM05D002474 ORTHO05D006727 1.8e-66 257.3 180 73.3
BolC4t26228H Brassica oleracea HOM05D002474 ORTHO05D006727 2.9e-56 223.4 218 54.6
HPP92_014139 Vanilla planifolia HOM05D002474 ORTHO05D006727 6.5e-56 222.2 313 40.9
SpUN0485_0010 Schrenkiella parvula HOM05D002474 ORTHO05D006727 4.1e-42 176.4 127 67.7
CBR_g50657 Chara braunii HOM05D002474 ORTHO05D006727 3.5e-41 173.3 203 44.3
Lj7A402G47 Lonicera japonica HOM05D002474 ORTHO05D006727 1.7e-40 171.0 160 61.9
HanXRQChr09g0265421 Helianthus annuus HOM05D002474 ORTHO05D006727 4.7e-38 162.9 121 62.0
CBR_g59258 Chara braunii HOM05D002474 ORTHO05D006727 6.1e-38 162.5 117 64.1
Lsat_1_v5_gn_6_77521 Lactuca sativa HOM05D002474 ORTHO05D006727 2.8e-35 153.7 222 40.5
SEGI_13584 Sequoiadendron giganteum HOM05D002474 ORTHO05D006727 1.4e-34 151.4 134 53.0
Sp7g01810 Schrenkiella parvula HOM05D002474 ORTHO05D006727 4.1e-34 149.8 134 58.2
Actinidia35021 Actinidia chinensis HOM05D002474 ORTHO05D006727 5.5e-31 139.4 247 38.9
SEGI_37465 Sequoiadendron giganteum HOM05D002474 ORTHO05D006727 1.2e-30 138.3 87 67.8
Lj7A402G46 Lonicera japonica HOM05D002474 ORTHO05D006727 1.3e-27 128.3 192 43.8
QL02p080121 Quercus lobata HOM05D002474 ORTHO05D006727 5.9e-25 119.4 86 67.4
MBI04_g20672_MAGBIO Magnolia biondii HOM05D002474 ORTHO05D006727 7.7e-25 119.0 223 36.8
Cc07_g02930 Coffea canephora HOM05D002474 ORTHO05D006727 6.6e-24 115.9 86 66.3
Rhsim10G0031800 Rhododendron simsii HOM05D002474 ORTHO05D006727 3.1e-13 80.5 54 63.0
Lsat_1_v5_gn_2_107941 Lactuca sativa HOM05D002474 ORTHO05D005260 4.9e-11 73.2 145 30.3
Peaxi162Scf00036g01918 Petunia axillaris HOM05D002474 ORTHO05D006727 8.3e-11 72.4 52 59.6
Peaxi162Scf00781g00210 Petunia axillaris HOM05D002474 ORTHO05D006727 3.2e-10 70.5 52 57.7
MCO07G529 Micromonas commoda HOM05D002474 ORTHO05D006727 3.5e-09 67.0 294 27.2
FAN01G1046 Fragaria x ananassa HOM05D002474 ORTHO05D006727 2.3e-08 64.3 41 82.9


User provided reference genes

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