Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G265300 Prunus persica HOM05D008101 ORTHO05D010163 1.2e-19 99.0 54 100.0
Potri.010G234200 Populus trichocarpa HOM05D008101 ORTHO05D010163 2.2e-13 78.2 54 77.8
CiPaw.03G024700 Carya illinoinensis HOM05D008101 ORTHO05D010163 6.3e-13 76.6 54 72.2
Dinv33773 Davidia involucrata HOM05D008101 ORTHO05D010163 6.3e-13 76.6 52 69.2
Thecc.04G085600 Theobroma cacao HOM05D008101 ORTHO05D010163 1.1e-12 75.9 54 70.4
Gohir.D07G212050 Gossypium hirsutum HOM05D008101 ORTHO05D010163 2.4e-12 74.7 54 68.5
Gorai.001G239800 Gossypium raimondii HOM05D008101 ORTHO05D010163 2.4e-12 74.7 54 68.5
Gohir.A07G206000 Gossypium hirsutum HOM05D008101 ORTHO05D010163 3.2e-12 74.3 54 66.7
Medtr6g012640 Medicago truncatula HOM05D008101 ORTHO05D010163 5.4e-12 73.6 54 70.4
Manes.02G047600 Manihot esculenta HOM05D008101 ORTHO05D010163 7.0e-12 73.2 53 73.6
RcHm_v2.0_Chr2g0167541 Rosa chinensis HOM05D008101 ORTHO05D010163 7.0e-12 73.2 54 70.4
CSS0047461 Camellia sinensis var. sinensis HOM05D008101 ORTHO05D010163 9.2e-12 72.8 54 64.8
MD09G1053300 Malus domestica HOM05D008101 ORTHO05D010163 9.2e-12 72.8 54 72.2
RcHm_v2.0_Chr2g0167501 Rosa chinensis HOM05D008101 ORTHO05D010163 1.6e-11 72.0 54 68.5
Cc07_g03530 Coffea canephora HOM05D008101 ORTHO05D010163 2.7e-11 71.2 54 66.7
RcHm_v2.0_Chr2g0167591 Rosa chinensis HOM05D008101 ORTHO05D010163 2.7e-11 71.2 54 68.5
Sopen02g032840 Solanum pennellii HOM05D008101 ORTHO05D010163 2.7e-11 71.2 54 66.7
BcaC06g33664 Brassica carinata HOM05D008101 ORTHO05D010163 7.8e-11 69.7 52 71.2
BcaC06g33665 Brassica carinata HOM05D008101 ORTHO05D010163 7.8e-11 69.7 52 71.2
C07p37940 Brassica napus HOM05D008101 ORTHO05D010163 7.8e-11 69.7 52 71.2
BolC7t44316H Brassica oleracea HOM05D008101 ORTHO05D010163 7.8e-11 69.7 52 71.2
Os04g0460350 Oryza sativa ssp. japonica HOM05D008101 ORTHO05D010163 7.8e-11 69.7 54 68.5
CAN.G206.165 Capsicum annuum HOM05D008101 ORTHO05D010163 1.0e-10 69.3 54 64.8
Glyma.13G062100 Glycine max HOM05D008101 ORTHO05D010163 1.0e-10 69.3 54 64.8
Sp2g17670 Schrenkiella parvula HOM05D008101 ORTHO05D010163 1.3e-10 68.9 52 69.2
A06p40170 Brassica napus HOM05D008101 ORTHO05D010163 1.7e-10 68.6 52 69.2
BraA06t26932Z Brassica rapa HOM05D008101 ORTHO05D010163 1.7e-10 68.6 52 69.2
CARHR152140 Cardamine hirsuta HOM05D008101 ORTHO05D010163 1.7e-10 68.6 52 69.2
BcaC06g30874 Brassica carinata HOM05D008101 ORTHO05D010163 2.3e-10 68.2 52 69.2
Sed0001905 Sechium edule HOM05D008101 ORTHO05D010163 2.9e-10 67.8 54 63.0
C02p56620 Brassica napus HOM05D008101 ORTHO05D010163 5.0e-10 67.0 52 69.2
Carub.0005s0764 Capsella rubella HOM05D008101 ORTHO05D010163 5.0e-10 67.0 52 67.3
BcaC03g17658 Brassica carinata HOM05D008101 ORTHO05D010163 6.6e-10 66.6 52 67.3
BolC2t11574H Brassica oleracea HOM05D008101 ORTHO05D010163 6.6e-10 66.6 52 67.3
BolC2t11721H Brassica oleracea HOM05D008101 ORTHO05D010163 6.6e-10 66.6 52 67.3
Migut.H00938 Erythranthe guttata HOM05D008101 ORTHO05D010163 6.6e-10 66.6 54 63.0
FvH4_6g48300 Fragaria vesca HOM05D008101 ORTHO05D010163 6.6e-10 66.6 49 67.3
FAN09G0090 Fragaria x ananassa HOM05D008101 ORTHO05D010163 6.6e-10 66.6 49 67.3
FAN14G5148 Fragaria x ananassa HOM05D008101 ORTHO05D010163 6.6e-10 66.6 49 67.3
AT3G29034 Arabidopsis thaliana HOM05D008101 ORTHO05D010163 8.6e-10 66.2 52 67.3
BcaC03g17547 Brassica carinata HOM05D008101 ORTHO05D010163 1.1e-09 65.9 52 67.3
C02p55260 Brassica napus HOM05D008101 ORTHO05D010163 1.1e-09 65.9 52 67.3
Nn4g23220 Nelumbo nucifera HOM05D008101 ORTHO05D010163 1.1e-09 65.9 54 59.3
Phvul.004G030000 Phaseolus vulgaris HOM05D008101 ORTHO05D010163 1.1e-09 65.9 54 63.0
AL5G18900 Arabidopsis lyrata HOM05D008101 ORTHO05D010163 1.5e-09 65.5 52 65.4
A02p36290 Brassica napus HOM05D008101 ORTHO05D010163 1.5e-09 65.5 52 67.3
BraA02t08628Z Brassica rapa HOM05D008101 ORTHO05D010163 1.5e-09 65.5 52 67.3
THA.LOC109116617 Tarenaya hassleriana HOM05D008101 ORTHO05D010163 1.5e-09 65.5 50 64.0
BcaB07g30101 Brassica carinata HOM05D008101 ORTHO05D010163 4.3e-09 63.9 52 67.3
FAN09G1556 Fragaria x ananassa HOM05D008101 ORTHO05D010163 4.3e-09 63.9 53 62.3
PGR083G0374 Punica granatum HOM05D008101 ORTHO05D010163 4.3e-09 63.9 54 59.3
Solyc02g088130.1 Solanum lycopersicum HOM05D008101 ORTHO05D010163 4.3e-09 63.9 48 68.8
Carub.0007s3631 Capsella rubella HOM05D008101 ORTHO05D010163 9.5e-09 62.8 52 61.5
Nn3g17291 Nelumbo nucifera HOM05D008101 ORTHO05D010163 9.5e-09 62.8 54 57.4
FAN05G3293 Fragaria x ananassa HOM05D008101 ORTHO05D010163 1.2e-08 62.4 48 68.8
Lj2g0000476 Lotus japonicus HOM05D008101 ORTHO05D010163 2.1e-08 61.6 54 61.1
Lalb_Chr06g0175261 Lupinus albus HOM05D008101 ORTHO05D010163 2.8e-08 61.2 46 65.2
Aqoxy3G03441 Aquilegia oxysepala HOM05D008101 ORTHO05D010163 4.7e-08 60.5 53 62.3
FAN02G2446 Fragaria x ananassa HOM05D008101 ORTHO05D010163 4.7e-08 60.5 53 58.5
SalBow1G0549 Salvia bowleyana HOM05D008101 ORTHO05D010163 6.1e-08 60.1 54 61.1
SalBow1G6176 Salvia bowleyana HOM05D008101 ORTHO05D010163 6.1e-08 60.1 54 61.1
Aa31LG2G4160 Aethionema arabicum HOM05D008101 ORTHO05D010163 8.0e-08 59.7 52 57.7
Rhsim10G0036400 Rhododendron simsii HOM05D018356 ORTHO05D010163 8.0e-08 59.7 49 57.1
SalBow8G3752 Salvia bowleyana HOM05D008101 ORTHO05D010163 1.0e-07 59.3 54 61.1
EL10Ac9g21543 Beta vulgaris HOM05D008101 ORTHO05D010163 1.8e-07 58.5 49 63.3
ClCG10G015220 Citrullus lanatus HOM05D008101 ORTHO05D010163 3.1e-07 57.8 44 65.9
Sp7g02370 Schrenkiella parvula HOM05D008101 ORTHO05D010163 4.0e-07 57.4 49 59.2
MBI02_g12271_MAGBIO Magnolia biondii HOM05D008101 ORTHO05D010163 6.8e-07 56.6 45 60.0


User provided reference genes

Program Settings