Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G261900 Prunus persica HOM05D004550 ORTHO05D005340 9.1e-119 430.3 217 100.0
FvH4_6g47773 Fragaria vesca HOM05D004550 ORTHO05D005340 4.6e-78 295.0 213 73.7
MD09G1057200 Malus domestica HOM05D004550 ORTHO05D005340 8.6e-77 290.8 214 75.2
FAN05G1708 Fragaria x ananassa HOM05D004550 ORTHO05D005340 3.3e-76 288.9 213 72.8
RcHm_v2.0_Chr2g0166971 Rosa chinensis HOM05D004550 ORTHO05D005340 2.1e-75 286.2 216 70.4
TAR629G0577 Trochodendron aralioides HOM05D004550 ORTHO05D005340 3.0e-69 265.8 218 64.7
CANSAT64G2188 Cannabis sativa HOM05D004550 ORTHO05D005340 1.1e-68 263.8 220 63.6
Dinv34106 Davidia involucrata HOM05D004550 ORTHO05D005340 8.1e-67 257.7 218 66.1
CSS0021997 Camellia sinensis var. sinensis HOM05D004550 ORTHO05D005340 3.4e-65 252.3 224 62.5
CSS0045485 Camellia sinensis var. sinensis HOM05D004550 ORTHO05D005340 2.9e-64 249.2 224 62.1
Nn3g17356 Nelumbo nucifera HOM05D004550 ORTHO05D005340 2.9e-64 249.2 218 63.8
Rhsim12G0077600 Rhododendron simsii HOM05D004550 ORTHO05D005340 4.1e-63 245.4 218 61.0
Actinidia31956 Actinidia chinensis HOM05D004550 ORTHO05D005340 9.2e-63 244.2 218 61.5
CiPaw.06G089400 Carya illinoinensis HOM05D004550 ORTHO05D005340 3.5e-62 242.3 218 61.5
CiPaw.05G128700 Carya illinoinensis HOM05D004550 ORTHO05D005340 4.6e-62 241.9 218 60.6
GSVIVG01011473001 Vitis vinifera HOM05D004550 ORTHO05D005340 4.6e-62 241.9 219 60.7
Cfa008917 Carpinus fangiana HOM05D004550 ORTHO05D005340 1.7e-61 240.0 218 61.9
FAN14G0263 Fragaria x ananassa HOM05D004550 ORTHO05D005340 2.3e-61 239.6 162 75.9
MBI19_g03106_MAGBIO Magnolia biondii HOM05D004550 ORTHO05D005340 3.0e-61 239.2 219 60.3
QL03p070023 Quercus lobata HOM05D004550 ORTHO05D005340 3.0e-61 239.2 218 61.0
Cc11_g12470 Coffea canephora HOM05D004550 ORTHO05D005340 8.6e-61 237.7 222 60.4
Nn4g23307 Nelumbo nucifera HOM05D004550 ORTHO05D005340 3.3e-60 235.7 218 61.0
MSTRG.7770 Avicennia marina HOM05D004550 ORTHO05D005340 5.6e-60 235.0 218 57.8
Hma1.2p1_0354F.1_g133690 Hydrangea macrophylla HOM05D004550 ORTHO05D005340 9.6e-60 234.2 218 60.1
Migut.L01230 Erythranthe guttata HOM05D004550 ORTHO05D005340 1.2e-59 233.8 218 57.8
Atru.chr11.1702 Acer truncatum HOM05D004550 ORTHO05D005340 1.6e-59 233.4 217 60.4
Nitab4.5_0000334g0090 Nicotiana tabacum HOM05D004550 ORTHO05D005340 2.8e-59 232.6 219 59.4
TAR374G1091 Trochodendron aralioides HOM05D004550 ORTHO05D005340 2.8e-59 232.6 165 68.5
Ciclev10032704m.g Citrus clementina HOM05D004550 ORTHO05D005340 3.6e-59 232.3 215 62.3
Nitab4.5_0011843g0010 Nicotiana tabacum HOM05D004550 ORTHO05D005340 1.1e-58 230.7 219 58.9
Duzib251G0963 Durio zibethinus HOM05D004550 ORTHO05D005340 2.4e-58 229.6 216 60.2
Duzib268G1083 Durio zibethinus HOM05D004550 ORTHO05D005340 3.1e-58 229.2 218 59.6
SGA_v2.0_scaffold16G07747 Striga asiatica HOM05D004550 ORTHO05D005340 4.0e-58 228.8 220 56.8
TAR371G1135 Trochodendron aralioides HOM05D004550 ORTHO05D005340 1.2e-57 227.3 193 62.2
Aqoxy3G03523 Aquilegia oxysepala HOM05D004550 ORTHO05D005340 2.6e-57 226.1 220 59.1
GSVIVG01001334001 Vitis vinifera HOM05D004550 ORTHO05D005340 4.4e-57 225.3 218 60.6
Peaxi162Scf00364g00223 Petunia axillaris HOM05D004550 ORTHO05D005340 5.8e-57 224.9 218 57.3
RcHm_v2.0_Chr4g0438981 Rosa chinensis HOM05D004550 ORTHO05D005340 5.8e-57 224.9 218 59.6
ClCG09G021950 Citrullus lanatus HOM05D004550 ORTHO05D005340 2.9e-56 222.6 220 57.7
CsaV3_5G025150 Cucumis sativus L. HOM05D004550 ORTHO05D005340 2.9e-56 222.6 220 58.2
Gohir.D12G165500 Gossypium hirsutum HOM05D004550 ORTHO05D005340 3.8e-56 222.2 220 57.3
Gorai.008G178200 Gossypium raimondii HOM05D004550 ORTHO05D005340 3.8e-56 222.2 220 57.3
TWI31G0520 Tripterygium wilfordii HOM05D004550 ORTHO05D005340 3.8e-56 222.2 216 59.7
PSO063G6186 Papaver somniferum HOM05D004550 ORTHO05D005340 6.4e-56 221.5 218 56.4
Thecc.02G338200 Theobroma cacao HOM05D004550 ORTHO05D005340 6.4e-56 221.5 218 58.3
PGSC0003DMG400028333 Solanum tuberosum HOM05D004550 ORTHO05D005340 8.4e-56 221.1 218 56.4
Thhalv10019103m.g Eutrema salsugineum HOM05D004550 ORTHO05D005340 1.1e-55 220.7 210 58.6
Potri.008G092300 Populus trichocarpa HOM05D004550 ORTHO05D005340 1.1e-55 220.7 213 59.2
Eucgr.B03186 Eucalyptus grandis HOM05D004550 ORTHO05D005340 1.9e-55 219.9 220 58.2
Solyc05g012710.4 Solanum lycopersicum HOM05D004550 ORTHO05D005340 2.4e-55 219.5 218 56.0
BcaB05g24446 Brassica carinata HOM05D004550 ORTHO05D005340 3.2e-55 219.2 208 59.6
Oeu021093.1 Olea europaea HOM05D004550 ORTHO05D005340 3.2e-55 219.2 162 66.7
Potri.010G162600 Populus trichocarpa HOM05D004550 ORTHO05D005340 3.2e-55 219.2 220 59.1
Sopen05g007540 Solanum pennellii HOM05D004550 ORTHO05D005340 3.2e-55 219.2 218 55.5
PGR102G3210 Punica granatum HOM05D004550 ORTHO05D005340 4.2e-55 218.8 220 57.7
PSO063G5570 Papaver somniferum HOM05D004550 ORTHO05D005340 5.4e-55 218.4 218 55.5
Cpa.g.sc1.80 Carica papaya HOM05D004550 ORTHO05D005340 7.1e-55 218.0 156 71.2
Gohir.A12G162200 Gossypium hirsutum HOM05D004550 ORTHO05D005340 7.1e-55 218.0 218 56.9
Sed0017620 Sechium edule HOM05D004550 ORTHO05D005340 7.1e-55 218.0 219 56.6
CAN.G1200.3 Capsicum annuum HOM05D004550 ORTHO05D005340 9.3e-55 217.6 218 55.0
Haze_11945 Corylus avellana HOM05D004550 ORTHO05D005340 1.2e-54 217.2 167 65.9
Manes.05G107100 Manihot esculenta HOM05D004550 ORTHO05D005340 1.2e-54 217.2 220 56.4
Aa31LG4G11470 Aethionema arabicum HOM05D004550 ORTHO05D005340 1.6e-54 216.9 210 58.1
FAN17G0531 Fragaria x ananassa HOM05D004550 ORTHO05D005340 3.5e-54 215.7 218 57.8
FAN07G0354 Fragaria x ananassa HOM05D004550 ORTHO05D005340 6.0e-54 214.9 215 56.7
vmacro01339 Vaccinium macrocarpon HOM05D004550 ORTHO05D005340 6.0e-54 214.9 187 61.0
Prupe.1G281100 Prunus persica HOM05D004550 ORTHO05D005340 7.8e-54 214.5 215 57.2
arahy.Tifrunner.gnm1.ann1.M1L69X Arachis hypogaea HOM05D004550 ORTHO05D005340 1.0e-53 214.2 224 54.0
FvH4_4g30590 Fragaria vesca HOM05D004550 ORTHO05D005340 1.0e-53 214.2 215 57.2
FAN12G3802 Fragaria x ananassa HOM05D004550 ORTHO05D005340 1.0e-53 214.2 215 57.2
DCAR_007179 Daucus carota HOM05D004550 ORTHO05D005340 1.3e-53 213.8 212 55.7
DCAR_030983 Daucus carota HOM05D004550 ORTHO05D005340 1.3e-53 213.8 218 55.5
Sp5g24440 Schrenkiella parvula HOM05D004550 ORTHO05D005340 1.3e-53 213.8 215 57.7
VMungo1215G2831 Vigna mungo HOM05D004550 ORTHO05D005340 1.3e-53 213.8 226 56.2
Phvul.002G090800 Phaseolus vulgaris HOM05D004550 ORTHO05D005340 2.3e-53 213.0 226 55.8
CARHR062270 Cardamine hirsuta HOM05D004550 ORTHO05D005340 3.0e-53 212.6 207 58.5
COL.COLO4_27949 Corchorus olitorius HOM05D004550 ORTHO05D005340 3.9e-53 212.2 155 71.0
Actinidia19927 Actinidia chinensis HOM05D004550 ORTHO05D005340 6.6e-53 211.5 190 58.9
arahy.Tifrunner.gnm1.ann1.F9ESEJ Arachis hypogaea HOM05D004550 ORTHO05D005340 8.7e-53 211.1 224 52.7
FAN22G1576 Fragaria x ananassa HOM05D004550 ORTHO05D005340 1.5e-52 210.3 218 56.4
Sabra08G0069100 Salix brachista HOM05D004550 ORTHO05D005340 1.5e-52 210.3 198 59.6
C06p40530 Brassica napus HOM05D004550 ORTHO05D005340 1.9e-52 209.9 214 58.4
BolC2t08705H Brassica oleracea HOM05D004550 ORTHO05D005340 1.9e-52 209.9 211 58.8
HanXRQChr12g0362721 Helianthus annuus HOM05D004550 ORTHO05D005340 1.9e-52 209.9 218 54.1
BolC6t39378H Brassica oleracea HOM05D004550 ORTHO05D005340 2.5e-52 209.5 212 58.0
SGA_v2.0_scaffold36G14423 Striga asiatica HOM05D004550 ORTHO05D005340 3.3e-52 209.1 218 54.1
ECA233G5814 Erigeron canadensis HOM05D004550 ORTHO05D005340 7.3e-52 208.0 210 56.7
TWI79G1514 Tripterygium wilfordii HOM05D004550 ORTHO05D005340 7.3e-52 208.0 216 57.9
Glyma.02G112600 Glycine max HOM05D004550 ORTHO05D005340 9.6e-52 207.6 226 54.4
Lalb_Chr17g0340931 Lupinus albus HOM05D004550 ORTHO05D005340 9.6e-52 207.6 221 56.1
C02p26330 Brassica napus HOM05D004550 ORTHO05D005340 1.3e-51 207.2 211 58.3
Ca_27938_v3 Cicer arietinum L. HOM05D004550 ORTHO05D005340 1.3e-51 207.2 224 54.5
MELO3C002974.2 Cucumis melo HOM05D004550 ORTHO05D005340 1.3e-51 207.2 250 50.8
Glyma.01G054200 Glycine max HOM05D004550 ORTHO05D005340 1.3e-51 207.2 230 54.8
A07p35690 Brassica napus HOM05D004550 ORTHO05D005340 2.1e-51 206.5 209 57.4
BraA07t31157Z Brassica rapa HOM05D004550 ORTHO05D005340 2.1e-51 206.5 209 57.4
TPR.G30749 Trifolium pratense HOM05D004550 ORTHO05D005340 2.1e-51 206.5 199 57.8
Ah.02g129300 Amaranthus hybridus HOM05D004550 ORTHO05D005340 2.8e-51 206.1 237 51.9
AL2G28500 Arabidopsis lyrata HOM05D004550 ORTHO05D005340 6.2e-51 204.9 211 55.9
AT1G69390 Arabidopsis thaliana HOM05D004550 ORTHO05D005340 8.1e-51 204.5 213 56.8
A02p15870 Brassica napus HOM05D004550 ORTHO05D005340 1.4e-50 203.8 187 57.8
Medtr5g043020 Medicago truncatula HOM05D004550 ORTHO05D005340 1.8e-50 203.4 225 54.7
Sabra10G0123800 Salix brachista HOM05D001252 ORTHO05D005340 2.4e-50 203.0 189 60.3
unitig_21.g20859 Utricularia gibba HOM05D004550 ORTHO05D005340 2.4e-50 203.0 221 52.0
THA.LOC104822027 Tarenaya hassleriana HOM05D004550 ORTHO05D005340 4.0e-50 202.2 213 56.8
Sc04g0007790 Simmondsia chinensis HOM05D004550 ORTHO05D005340 5.3e-50 201.8 221 53.8
BcaC03g15080 Brassica carinata HOM05D004550 ORTHO05D005340 9.0e-50 201.1 152 68.4
HanXRQChr08g0210541 Helianthus annuus HOM05D004550 ORTHO05D005340 9.0e-50 201.1 211 54.5
HanXRQChr08g0211031 Helianthus annuus HOM05D004550 ORTHO05D005340 9.0e-50 201.1 211 54.5
Carub.0002s1599 Capsella rubella HOM05D004550 ORTHO05D005340 1.2e-49 200.7 216 56.9
Lj2g0016497 Lotus japonicus HOM05D004550 ORTHO05D005340 1.2e-49 200.7 224 54.0
Sabra04G0067200 Salix brachista HOM05D004550 ORTHO05D005340 1.2e-49 200.7 208 54.8
Manes.05G087100 Manihot esculenta HOM05D004550 ORTHO05D005340 1.5e-49 200.3 163 63.2
Potri.004G121000 Populus trichocarpa HOM05D004550 ORTHO05D005340 1.5e-49 200.3 188 60.1
BcaB03g15897 Brassica carinata HOM05D004550 ORTHO05D005340 5.8e-49 198.4 215 56.3
Lsat_1_v5_gn_8_46800 Lactuca sativa HOM05D004550 ORTHO05D005340 5.8e-49 198.4 219 53.0
Ah.03g134600 Amaranthus hybridus HOM05D004550 ORTHO05D005340 9.9e-49 197.6 222 51.8
EL10Ac6g13282 Beta vulgaris HOM05D004550 ORTHO05D005340 9.9e-49 197.6 188 57.4
Psat2g127440 Pisum sativum HOM05D004550 ORTHO05D005340 3.8e-48 195.7 225 51.6
Hund05856 Selenicereus undatus HOM05D004550 ORTHO05D005340 1.9e-47 193.4 219 53.4
Os12g0498400 Oryza sativa ssp. japonica HOM05D004550 ORTHO05D005340 7.1e-47 191.4 188 54.8
ATR0730G201 Amborella trichopoda HOM05D004550 ORTHO05D005340 1.2e-46 190.7 152 66.4
Lalb_Chr04g0255821 Lupinus albus HOM05D004550 ORTHO05D005340 1.2e-46 190.7 222 52.3
PSO478G0019 Papaver somniferum HOM05D004550 ORTHO05D005340 1.2e-46 190.7 178 60.1
HPP92_018458 Vanilla planifolia HOM05D004550 ORTHO05D005340 3.5e-46 189.1 221 49.8
CDE04G2021 Ceratophyllum demersum HOM05D004550 ORTHO05D005340 2.5e-44 183.0 140 65.7
Sed0010995 Sechium edule HOM05D004550 ORTHO05D005340 4.3e-44 182.2 218 49.5
HanXRQChr17g0545411 Helianthus annuus HOM05D004550 ORTHO05D005340 1.6e-43 180.3 216 50.5
MSTRG.729 Avicennia marina HOM05D004550 ORTHO05D005340 2.0e-41 173.3 123 71.5
MELO3C012132.2 Cucumis melo HOM05D004550 ORTHO05D005340 2.9e-40 169.5 228 47.8
Gohir.D02G127801 Gossypium hirsutum HOM05D004550 ORTHO05D005340 8.4e-40 167.9 217 49.3
Gorai.005G143600 Gossypium raimondii HOM05D004550 ORTHO05D005340 8.4e-40 167.9 217 49.3
SEGI_17925 Sequoiadendron giganteum HOM05D004550 ORTHO05D005340 8.4e-40 167.9 144 61.1
CsaV3_5G033110 Cucumis sativus L. HOM05D004550 ORTHO05D005340 1.4e-39 167.2 147 60.5
AUR62005866 Chenopodium quinoa HOM05D004550 ORTHO05D005340 4.6e-38 162.2 221 45.7
ClCG05G023910 Citrullus lanatus HOM05D004550 ORTHO05D005340 6.0e-38 161.8 142 62.7
Thecc.02G337600 Theobroma cacao HOM05D004550 ORTHO05D005340 2.5e-36 156.4 103 74.8
AUR62032858 Chenopodium quinoa HOM05D004550 ORTHO05D005340 5.6e-36 155.2 221 44.3
Mapoly0021s0017 Marchantia polymorpha HOM05D004550 ORTHO05D005340 6.2e-35 151.8 175 52.0
Actinidia33237 Actinidia chinensis HOM05D004550 ORTHO05D005340 3.1e-34 149.4 151 55.6
Zm00001eb409620 Zea mays HOM05D004550 ORTHO05D005340 5.3e-34 148.7 115 64.3
Pp3c23_20800 Physcomitrium patens HOM05D004550 ORTHO05D005340 1.3e-32 144.1 185 49.2
Pp3c20_5010 Physcomitrium patens HOM05D004550 ORTHO05D005340 3.8e-32 142.5 123 63.4
AagrBONN_evm.TU.Sc2ySwM_344.2821 Anthoceros agrestis HOM05D004550 ORTHO05D005340 3.2e-31 139.4 117 60.7
SMO356G0701 Selaginella moellendorffii HOM05D004550 ORTHO05D005340 3.5e-30 136.0 121 59.5
SMO141G0150 Selaginella moellendorffii HOM05D004550 ORTHO05D005340 1.8e-29 133.7 105 59.0
Pp3c9_20530 Physcomitrium patens HOM05D004550 ORTHO05D005340 4.3e-28 129.0 183 42.6
MD16G1066100 Malus domestica HOM05D004550 ORTHO05D005340 1.1e-26 124.4 89 73.0
BcaC08g45895 Brassica carinata HOM05D004550 ORTHO05D005340 6.7e-21 105.1 71 73.2
BcaB03g15467 Brassica carinata HOM05D004550 ORTHO05D005340 9.1e-18 94.7 64 73.4
arahy.Tifrunner.gnm1.ann1.QAIU0T Arachis hypogaea HOM05D004550 ORTHO05D005340 1.5e-17 94.0 68 69.1
Potri.017G088401 Populus trichocarpa HOM05D004550 ORTHO05D005340 2.9e-16 89.7 63 63.5
PRCOL_00005365 Prasinoderma coloniale HOM05D004550 ORTHO05D005340 7.2e-15 85.1 104 39.4
Cre17.g720350 Chlamydomonas reinhardtii HOM05D004550 ORTHO05D005340 1.4e-13 80.9 94 44.7
C06p37000 Brassica napus HOM05D004550 ORTHO05D005340 5.7e-12 75.5 82 53.7
BolC6t38810H Brassica oleracea HOM05D004550 ORTHO05D005340 5.7e-12 75.5 82 53.7
MCO05G609 Micromonas commoda HOM05D004550 ORTHO05D005340 5.7e-12 75.5 116 37.9


User provided reference genes

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