Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G259500 Prunus persica HOM05D005310 ORTHO05D006920 8.5e-41 169.9 83 100.0
Prupe.6G055000 Prunus persica HOM05D005310 ORTHO05D006920 2.5e-40 168.3 83 98.8
Prupe.4G066900 Prunus persica HOM05D005310 ORTHO05D006920 3.3e-37 157.9 79 94.9
FAN21G2773 Fragaria x ananassa HOM05D005310 ORTHO05D006920 1.4e-35 152.5 79 89.9
RcHm_v2.0_Chr5g0011641 Rosa chinensis HOM05D005310 ORTHO05D006920 1.4e-35 152.5 79 91.1
RcHm_v2.0_Chr5g0061601 Rosa chinensis HOM05D005310 ORTHO05D006920 1.4e-35 152.5 79 91.1
FAN16G3592 Fragaria x ananassa HOM05D005310 ORTHO05D006920 1.8e-35 152.1 79 89.9
MD00G1009300 Malus domestica HOM05D005310 ORTHO05D006920 2.4e-35 151.8 79 89.9
MD05G1295400 Malus domestica HOM05D005310 ORTHO05D006920 2.4e-35 151.8 79 89.9
Sed0028201 Sechium edule HOM05D005310 ORTHO05D006920 5.3e-35 150.6 79 91.1
FAN25G3188 Fragaria x ananassa HOM05D005310 ORTHO05D006920 6.9e-35 150.2 79 88.6
Hma1.2p1_2416F.1_g321730 Hydrangea macrophylla HOM05D005310 ORTHO05D006920 6.9e-35 150.2 80 88.8
Dinv12753 Davidia involucrata HOM05D005310 ORTHO05D006920 9.1e-35 149.8 79 89.9
FvH4_3g07310 Fragaria vesca HOM05D005310 ORTHO05D006920 9.1e-35 149.8 79 88.6
Aa31LG6G1520 Aethionema arabicum HOM05D005310 ORTHO05D006920 1.2e-34 149.4 79 87.3
COL.COLO4_31237 Corchorus olitorius HOM05D005310 ORTHO05D006920 1.2e-34 149.4 79 87.3
Migut.M01009 Erythranthe guttata HOM05D005310 ORTHO05D006920 1.2e-34 149.4 79 86.1
Ah.14g086990 Amaranthus hybridus HOM05D005310 ORTHO05D006920 1.5e-34 149.1 79 87.3
Aqoxy1G01994 Aquilegia oxysepala HOM05D005310 ORTHO05D006920 1.5e-34 149.1 79 87.3
ClCG03G007450 Citrullus lanatus HOM05D005310 ORTHO05D006920 1.5e-34 149.1 79 88.6
MELO3C002677.2 Cucumis melo HOM05D005310 ORTHO05D006920 1.5e-34 149.1 79 88.6
CsaV3_1G033090 Cucumis sativus L. HOM05D005310 ORTHO05D006920 1.5e-34 149.1 79 88.6
FAN11G0629 Fragaria x ananassa HOM05D005310 ORTHO05D006920 2.0e-34 148.7 79 87.3
Sabra04G0040500 Salix brachista HOM05D005310 ORTHO05D006920 2.0e-34 148.7 82 82.9
Actinidia07651 Actinidia chinensis HOM05D005310 ORTHO05D006920 2.6e-34 148.3 79 87.3
Dinv32339 Davidia involucrata HOM05D005310 ORTHO05D006920 2.6e-34 148.3 79 88.6
Hma1.2p1_2416F.1_g321740 Hydrangea macrophylla HOM05D005310 ORTHO05D006920 2.6e-34 148.3 79 88.6
Prupe.7G223300 Prunus persica HOM05D005310 ORTHO05D006920 2.6e-34 148.3 78 92.3
EL10Ac8g20559 Beta vulgaris HOM05D005310 ORTHO05D006920 4.5e-34 147.5 79 86.1
AUR62041821 Chenopodium quinoa HOM05D005310 ORTHO05D006920 4.5e-34 147.5 79 86.1
CSS0016268 Camellia sinensis var. sinensis HOM05D005310 ORTHO05D006920 5.9e-34 147.1 79 87.3
Gohir.A06G133700 Gossypium hirsutum HOM05D005310 ORTHO05D006920 5.9e-34 147.1 79 84.8
Gohir.D06G138800 Gossypium hirsutum HOM05D005310 ORTHO05D006920 5.9e-34 147.1 79 84.8
Gorai.010G161400 Gossypium raimondii HOM05D005310 ORTHO05D006920 5.9e-34 147.1 79 84.8
QL05p049965 Quercus lobata HOM05D005310 ORTHO05D006920 5.9e-34 147.1 79 87.3
AL7G35440 Arabidopsis lyrata HOM05D005310 ORTHO05D006920 7.7e-34 146.7 79 84.8
Sp7g17520 Schrenkiella parvula HOM05D005310 ORTHO05D006920 7.7e-34 146.7 79 84.8
AT4G18810 Arabidopsis thaliana HOM05D005310 ORTHO05D006920 1.3e-33 146.0 79 84.8
CiPaw.09G137200 Carya illinoinensis HOM05D005310 ORTHO05D006920 1.3e-33 146.0 79 86.1
Eucgr.E02785 Eucalyptus grandis HOM05D005310 ORTHO05D006920 1.3e-33 146.0 79 84.8
Thhalv10024714m.g Eutrema salsugineum HOM05D005310 ORTHO05D006920 1.3e-33 146.0 79 84.8
Manes.16G042900 Manihot esculenta HOM05D005310 ORTHO05D006920 1.3e-33 146.0 79 87.3
Potri.004G061200 Populus trichocarpa HOM05D005310 ORTHO05D006920 1.3e-33 146.0 79 84.8
TPR.G6733 Trifolium pratense HOM05D005310 ORTHO05D006920 1.3e-33 146.0 79 86.1
GSVIVG01021256001 Vitis vinifera HOM05D005310 ORTHO05D006920 1.7e-33 145.6 79 86.1
Carub.0007s2242 Capsella rubella HOM05D005310 ORTHO05D006920 2.2e-33 145.2 79 83.5
Duzib192G0594 Durio zibethinus HOM05D005310 ORTHO05D006920 2.2e-33 145.2 79 83.5
PSO210G5690 Papaver somniferum HOM05D005310 ORTHO05D006920 2.2e-33 145.2 79 84.8
Cpa.g.sc7.109 Carica papaya HOM05D005310 ORTHO05D006920 2.9e-33 144.8 79 83.5
Phvul.002G241100 Phaseolus vulgaris HOM05D005310 ORTHO05D006920 2.9e-33 144.8 79 86.1
SGA_v2.0_scaffold16G07714 Striga asiatica HOM05D005310 ORTHO05D006920 2.9e-33 144.8 79 84.8
CARHR225670 Cardamine hirsuta HOM05D005310 ORTHO05D006920 3.8e-33 144.4 79 82.3
SalBow8G4237 Salvia bowleyana HOM05D005310 ORTHO05D006920 3.8e-33 144.4 79 83.5
THA.LOC104806167 Tarenaya hassleriana HOM05D005310 ORTHO05D006920 3.8e-33 144.4 79 83.5
Thecc.06G165700 Theobroma cacao HOM05D005310 ORTHO05D006920 3.8e-33 144.4 79 83.5
Ciclev10018335m.g Citrus clementina HOM05D005310 ORTHO05D006920 5.0e-33 144.1 79 83.5
TWI53G0456 Tripterygium wilfordii HOM05D005310 ORTHO05D006920 5.0e-33 144.1 79 83.5
A01p10840 Brassica napus HOM05D005310 ORTHO05D006920 6.5e-33 143.7 79 82.3
C01p12850 Brassica napus HOM05D005310 ORTHO05D006920 6.5e-33 143.7 79 82.3
BolC1t01261H Brassica oleracea HOM05D005310 ORTHO05D006920 6.5e-33 143.7 79 82.3
BraA01t01031Z Brassica rapa HOM05D005310 ORTHO05D006920 6.5e-33 143.7 79 82.3
Ca_17897_v3 Cicer arietinum L. HOM05D005310 ORTHO05D006920 6.5e-33 143.7 79 84.8
Lj1A1175T55 Lonicera japonica HOM05D005310 ORTHO05D006920 6.5e-33 143.7 79 86.1
PGR042G1369 Punica granatum HOM05D005310 ORTHO05D006920 6.5e-33 143.7 79 83.5
AUR62039478 Chenopodium quinoa HOM05D005310 ORTHO05D006920 8.5e-33 143.3 79 83.5
Oeu040921.3 Olea europaea HOM05D005310 ORTHO05D006920 8.5e-33 143.3 79 83.5
Sc05g0006870 Simmondsia chinensis HOM05D005310 ORTHO05D006920 8.5e-33 143.3 79 79.7
vmacro16023 Vaccinium macrocarpon HOM05D005310 ORTHO05D006920 8.5e-33 143.3 79 84.8
ECA248G0338 Erigeron canadensis HOM05D005310 ORTHO05D006920 1.1e-32 142.9 79 84.8
Atru.chr10.1571 Acer truncatum HOM05D005310 ORTHO05D006920 1.4e-32 142.5 79 84.8
unitig_0.g743 Utricularia gibba HOM05D005310 ORTHO05D006920 1.4e-32 142.5 79 79.7
VMungo0251G0247 Vigna mungo HOM05D005310 ORTHO05D006920 1.9e-32 142.1 79 84.8
Nn3g21104 Nelumbo nucifera HOM05D005310 ORTHO05D006920 2.5e-32 141.7 79 84.8
Haze_05354 Corylus avellana HOM05D005310 ORTHO05D006920 3.2e-32 141.4 79 84.8
Haze_05356 Corylus avellana HOM05D005310 ORTHO05D006920 3.2e-32 141.4 79 84.8
Psat7g068720 Pisum sativum HOM05D005310 ORTHO05D006920 3.2e-32 141.4 79 82.3
Hund04397 Selenicereus undatus HOM05D005310 ORTHO05D006920 3.2e-32 141.4 79 82.3
Glyma.08G118400 Glycine max HOM05D005310 ORTHO05D006920 4.2e-32 141.0 79 83.5
Lj4g0024191 Lotus japonicus HOM05D005310 ORTHO05D006920 4.2e-32 141.0 79 84.8
Lsat_1_v5_gn_1_110100 Lactuca sativa HOM05D005310 ORTHO05D006920 9.4e-32 139.8 79 83.5
ATR0012G016 Amborella trichopoda HOM05D005310 ORTHO05D006920 1.2e-31 139.4 79 82.3
DCAR_027984 Daucus carota HOM05D005310 ORTHO05D006920 1.2e-31 139.4 79 82.3
Medtr8g087310 Medicago truncatula HOM05D005310 ORTHO05D006920 1.2e-31 139.4 79 81.0
HPP92_004025 Vanilla planifolia HOM05D005310 ORTHO05D006920 1.2e-31 139.4 79 79.7
Solyc02g072160.4 Solanum lycopersicum HOM05D005310 ORTHO05D006920 1.6e-31 139.0 79 83.5
Sopen02g021140 Solanum pennellii HOM05D005310 ORTHO05D006920 1.6e-31 139.0 79 83.5
Nitab4.5_0005937g0010 Nicotiana tabacum HOM05D005310 ORTHO05D006920 2.1e-31 138.7 79 82.3
AagrBONN_evm.TU.Sc2ySwM_362.2005 Anthoceros agrestis HOM05D005310 ORTHO05D006920 2.7e-31 138.3 79 78.5
SEGI_40960 Sequoiadendron giganteum HOM05D005310 ORTHO05D006920 2.7e-31 138.3 79 81.0
CAN.G411.52 Capsicum annuum HOM05D005310 ORTHO05D006920 3.6e-31 137.9 79 82.3
HanXRQChr11g0343901 Helianthus annuus HOM05D005310 ORTHO05D006920 3.6e-31 137.9 79 81.0
Os02g0234500 Oryza sativa ssp. japonica HOM05D005310 ORTHO05D006920 3.6e-31 137.9 79 79.7
PGSC0003DMG400028420 Solanum tuberosum HOM05D005310 ORTHO05D006920 4.7e-31 137.5 79 82.3
Cc02_g15580 Coffea canephora HOM05D005310 ORTHO05D006920 6.1e-31 137.1 79 78.5
Glyma.05G161000 Glycine max HOM05D005310 ORTHO05D006920 6.1e-31 137.1 80 82.5
Peaxi162Scf00202g01112 Petunia axillaris HOM05D005310 ORTHO05D006920 6.1e-31 137.1 79 79.7
arahy.Tifrunner.gnm1.ann1.NMJG4G Arachis hypogaea HOM05D005310 ORTHO05D006920 7.9e-31 136.7 79 81.0
Nitab4.5_0000437g0070 Nicotiana tabacum HOM05D005310 ORTHO05D006920 1.8e-30 135.6 79 81.0
Mapoly0037s0097 Marchantia polymorpha HOM05D005310 ORTHO05D006920 5.1e-30 134.0 79 74.7
HPP92_004012 Vanilla planifolia HOM05D005310 ORTHO05D006920 8.8e-30 133.3 79 77.2
SMO119G0157 Selaginella moellendorffii HOM05D005310 ORTHO05D006920 2.6e-29 131.7 79 74.7
CDE04G2110 Ceratophyllum demersum HOM05D005310 ORTHO05D006920 3.3e-29 131.3 79 81.0
Pp3c26_9450 Physcomitrium patens HOM05D005310 ORTHO05D006920 5.7e-29 130.6 79 74.7
TAR627G0081 Trochodendron aralioides HOM05D005310 ORTHO05D006920 9.7e-29 129.8 71 85.9
Lalb_Chr12g0204951 Lupinus albus HOM05D005310 ORTHO05D006920 5.3e-27 124.0 109 59.6
Haze_05378 Corylus avellana HOM05D005310 ORTHO05D006920 9.1e-27 123.2 79 78.5
Actinidia02744 Actinidia chinensis HOM05D005310 ORTHO05D006920 1.6e-26 122.5 79 78.5
Cre05.g244800 Chlamydomonas reinhardtii HOM05D005310 ORTHO05D006920 5.7e-21 104.0 78 60.3
CBR_g48496 Chara braunii HOM05D005310 ORTHO05D006920 8.2e-20 100.1 79 58.2
RcHm_v2.0_Chr2g0109871 Rosa chinensis HOM05D005310 ORTHO05D006920 2.7e-15 85.1 44 90.9
Prupe.8G174100 Prunus persica HOM05D005310 ORTHO05D006920 3.7e-12 74.7 38 92.1
PRCOL_00002435 Prasinoderma coloniale HOM05D005310 ORTHO05D006920 1.4e-11 72.8 89 46.1
Hund23039 Selenicereus undatus HOM05D005310 ORTHO05D006920 5.5e-08 60.8 39 74.4


User provided reference genes

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